data_R35
#
_chem_comp.id R35
_chem_comp.name "(2R)-2-tert-butylbutanedioic acid"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C8 H14 O4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2010-11-03
_chem_comp.pdbx_modified_date 2012-01-13
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 174.194
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code R35
_chem_comp.pdbx_model_coordinates_details "not provided"
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1JLD
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
R35 C1 C1 C 0 1 N N N N N N 53.331 21.016 1.039 0.232 -1.304 -0.116 C1 R35 1
R35 O1 O1 O 0 1 N N N N N N 52.173 20.678 1.217 -0.607 -1.635 -0.920 O1 R35 2
R35 C2 C2 C 0 1 N N R N N N 54.353 20.075 0.412 0.280 0.117 0.381 C2 R35 3
R35 C3 C3 C 0 1 N N N N N N 55.015 19.014 1.374 1.636 0.734 0.034 C3 R35 4
R35 C4 C4 C 0 1 N N N N N N 54.118 17.819 1.687 1.902 0.570 -1.464 C4 R35 5
R35 C5 C5 C 0 1 N N N N N N 56.229 18.480 0.627 1.627 2.221 0.391 C5 R35 6
R35 C6 C6 C 0 1 N N N N N N 55.395 19.696 2.677 2.736 0.026 0.827 C6 R35 7
R35 C7 C7 C 0 1 N N N N N N 53.768 19.530 -0.907 -0.834 0.928 -0.284 C7 R35 8
R35 C8 C8 C 0 1 N N N N N N 53.507 20.610 -1.939 -2.174 0.417 0.180 C8 R35 9
R35 O2 O2 O 0 1 N N N N N N 54.462 21.352 -2.557 -2.232 -0.427 1.043 O2 R35 10
R35 O3 O3 O 0 1 N Y N N N N 52.168 20.896 -2.352 -3.302 0.899 -0.365 O3 R35 11
R35 H1 H1 H 0 1 N N N N N N 55.254 20.659 0.175 0.142 0.129 1.462 H1 R35 12
R35 H2 H2 H 0 1 N N N N N N 54.648 17.128 2.360 1.119 1.074 -2.029 H2 R35 13
R35 H3 H3 H 0 1 N N N N N N 53.196 18.170 2.174 2.869 1.009 -1.712 H3 R35 14
R35 H4 H4 H 0 1 N N N N N N 53.863 17.297 0.753 1.909 -0.490 -1.718 H4 R35 15
R35 H5 H5 H 0 1 N N N N N N 56.741 17.729 1.247 1.316 2.344 1.428 H5 R35 16
R35 H6 H6 H 0 1 N N N N N N 55.904 18.017 -0.316 2.628 2.633 0.260 H6 R35 17
R35 H7 H7 H 0 1 N N N N N N 56.919 19.308 0.410 0.930 2.747 -0.262 H7 R35 18
R35 H8 H8 H 0 1 N N N N N N 55.858 18.963 3.354 2.743 -1.034 0.573 H8 R35 19
R35 H9 H9 H 0 1 N N N N N N 56.109 20.507 2.472 3.703 0.465 0.580 H9 R35 20
R35 H10 H10 H 0 1 N N N N N N 54.493 20.113 3.149 2.547 0.142 1.895 H10 R35 21
R35 H11 H11 H 0 1 N N N N N N 54.487 18.815 -1.332 -0.732 1.979 -0.011 H11 R35 22
R35 H12 H12 H 0 1 N N N N N N 52.813 19.033 -0.680 -0.761 0.825 -1.367 H12 R35 23
R35 O4 O4 O 0 1 N Y N N N N 53.474 22.358 1.510 1.118 -2.204 0.339 O4 R35 24
R35 H13 H13 H 0 1 N Y N N N N 52.179 21.580 -3.011 -4.137 0.540 -0.035 H13 R35 25
R35 H14 H14 H 0 1 N Y N N N N 52.641 22.666 1.847 1.045 -3.105 -0.006 H14 R35 26
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
R35 C1 O1 DOUB N N 1
R35 C1 C2 SING N N 2
R35 C2 C3 SING N N 3
R35 C2 C7 SING N N 4
R35 C2 H1 SING N N 5
R35 C3 C4 SING N N 6
R35 C3 C5 SING N N 7
R35 C3 C6 SING N N 8
R35 C4 H2 SING N N 9
R35 C4 H3 SING N N 10
R35 C4 H4 SING N N 11
R35 C5 H5 SING N N 12
R35 C5 H6 SING N N 13
R35 C5 H7 SING N N 14
R35 C6 H8 SING N N 15
R35 C6 H9 SING N N 16
R35 C6 H10 SING N N 17
R35 C7 C8 SING N N 18
R35 C7 H11 SING N N 19
R35 C7 H12 SING N N 20
R35 C8 O2 DOUB N N 21
R35 C8 O3 SING N N 22
R35 C1 O4 SING N N 23
R35 O3 H13 SING N N 24
R35 O4 H14 SING N N 25
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
R35 SMILES ACDLabs 12.01 O=C(O)C(CC(=O)O)C(C)(C)C
R35 SMILES_CANONICAL CACTVS 3.370 CC(C)(C)[C@@H](CC(O)=O)C(O)=O
R35 SMILES CACTVS 3.370 CC(C)(C)[CH](CC(O)=O)C(O)=O
R35 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 CC(C)(C)[C@@H](CC(=O)O)C(=O)O
R35 SMILES "OpenEye OEToolkits" 1.7.0 CC(C)(C)C(CC(=O)O)C(=O)O
R35 InChI InChI 1.03 InChI=1S/C8H14O4/c1-8(2,3)5(7(11)12)4-6(9)10/h5H,4H2,1-3H3,(H,9,10)(H,11,12)/t5-/m0/s1
R35 InChIKey InChI 1.03 YWCIQVCLMJYZBD-YFKPBYRVSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
R35 "SYSTEMATIC NAME" ACDLabs 12.01 "(2R)-2-tert-butylbutanedioic acid"
R35 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "(2R)-2-tert-butylbutanedioic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
R35 'Create component' 2010-11-03 RCSB
R35 'Modify descriptor' 2011-06-04 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
R35 C1 C 5.104 1.732 1
R35 O1 O 3.805 0.983 2
R35 C2 C 6.404 0.983 3
R35 C3 C 7.702 1.732 4
R35 C4 C 9.002 2.482 5
R35 C5 C 8.453 0.433 6
R35 C6 C 6.952 3.031 7
R35 C7 C 6.404 -0.517 8
R35 C8 C 5.104 -1.268 9
R35 O2 O 5.104 -2.768 10
R35 O3 O 3.805 -0.517 11
R35 O4 O 5.104 3.232 12
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
R35 C1 O1 DOUBLE NONE 1
R35 C1 C2 SINGLE NONE 2
R35 C2 C3 SINGLE NONE 3
R35 C2 C7 SINGLE BEGINWEDGE 4
R35 C3 C4 SINGLE NONE 5
R35 C3 C5 SINGLE NONE 6
R35 C3 C6 SINGLE NONE 7
R35 C7 C8 SINGLE NONE 8
R35 C8 O2 DOUBLE NONE 9
R35 C8 O3 SINGLE NONE 10
R35 C1 O4 SINGLE NONE 11
#
#
#
_pdbe_chem_comp_rdkit_properties.comp_id R35
_pdbe_chem_comp_rdkit_properties.exactmw 174.089
_pdbe_chem_comp_rdkit_properties.amw 174.196
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 3
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 4
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 12
_pdbe_chem_comp_rdkit_properties.NumAtoms 26
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 4
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.750
_pdbe_chem_comp_rdkit_properties.NumRings 0
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 91.048
_pdbe_chem_comp_rdkit_properties.tpsa 74.600
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.208
_pdbe_chem_comp_rdkit_properties.CrippenMR 42.834
_pdbe_chem_comp_rdkit_properties.chi0v 5.633
_pdbe_chem_comp_rdkit_properties.chi1v 2.566
_pdbe_chem_comp_rdkit_properties.chi2v 0.806
_pdbe_chem_comp_rdkit_properties.chi3v 0.806
_pdbe_chem_comp_rdkit_properties.chi4v 0.400
_pdbe_chem_comp_rdkit_properties.chi0n 19.633
_pdbe_chem_comp_rdkit_properties.chi1n 9.383
_pdbe_chem_comp_rdkit_properties.chi2n 0.806
_pdbe_chem_comp_rdkit_properties.chi3n 0.806
_pdbe_chem_comp_rdkit_properties.chi4n 0.400
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.060
_pdbe_chem_comp_rdkit_properties.kappa1 1.886
_pdbe_chem_comp_rdkit_properties.kappa2 3.559
_pdbe_chem_comp_rdkit_properties.kappa3 3.366
_pdbe_chem_comp_rdkit_properties.Phi 0.559
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
R35 UniChem PDBe R35
R35 UniChem SureChEMBL SCHEMBL8853350
R35 UniChem PubChem 13207313
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
R35 C1 0.046 1.820 1.017 ETKDGv3 1
R35 O1 0.073 1.991 2.266 ETKDGv3 2
R35 C2 0.455 0.488 0.427 ETKDGv3 3
R35 C3 -0.795 -0.439 0.153 ETKDGv3 4
R35 C4 -1.516 -0.736 1.490 ETKDGv3 5
R35 C5 -0.357 -1.796 -0.444 ETKDGv3 6
R35 C6 -1.816 0.211 -0.812 ETKDGv3 7
R35 C7 1.388 0.741 -0.793 ETKDGv3 8
R35 C8 2.348 -0.384 -1.051 ETKDGv3 9
R35 O2 2.437 -0.884 -2.205 ETKDGv3 10
R35 O3 3.177 -0.843 -0.032 ETKDGv3 11
R35 H1 1.073 -0.014 1.207 ETKDGv3 12
R35 H2 -1.931 0.192 1.938 ETKDGv3 13
R35 H3 -2.365 -1.437 1.337 ETKDGv3 14
R35 H4 -0.816 -1.197 2.220 ETKDGv3 15
R35 H5 0.006 -1.675 -1.486 ETKDGv3 16
R35 H6 0.446 -2.256 0.171 ETKDGv3 17
R35 H7 -1.211 -2.506 -0.484 ETKDGv3 18
R35 H8 -2.676 -0.473 -0.981 ETKDGv3 19
R35 H9 -1.366 0.426 -1.802 ETKDGv3 20
R35 H10 -2.224 1.154 -0.392 ETKDGv3 21
R35 H11 0.800 0.959 -1.707 ETKDGv3 22
R35 H12 2.015 1.640 -0.603 ETKDGv3 23
R35 O4 -0.373 2.859 0.189 ETKDGv3 24
R35 H13 3.838 -1.592 -0.198 ETKDGv3 25
R35 H14 -0.655 3.751 0.577 ETKDGv3 26
#