data_R4B
#
_chem_comp.id R4B
_chem_comp.name
;N-[(2S)-3-[(R)-(4-bromophenyl)(hydroxy)phosphoryl]-2-{[3-(3'-chlorobiphenyl-4-yl)-1,2-oxazol-5-yl]methyl}propanoyl]-L-a
lanyl-L-alaninamide
;
_chem_comp.type peptide-like
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C31 H31 Br Cl N4 O6 P"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms RXP470B
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2012-10-04
_chem_comp.pdbx_modified_date 2020-06-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 701.932
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code R4B
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4GR0
_chem_comp.pdbx_subcomponent_list "0YL ALA ALA NH2"
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
R4B O4 O4 O 0 1 N N N N N N -9.601 26.045 -4.733 -0.508 1.600 -2.331 O4 0YL 1
R4B N1 N1 N 0 1 Y N N N N N -6.120 22.270 -5.868 2.755 -0.044 -2.474 N1 0YL 2
R4B O1 O1 O 0 1 Y N N N N N -7.227 22.558 -5.198 1.569 -0.013 -2.709 O1 0YL 3
R4B C25 C25 C 0 1 N N N N N N -8.642 26.365 -4.005 -1.088 1.357 -1.294 C25 0YL 4
R4B C17 C17 C 0 1 N N S N N N -8.198 25.457 -2.902 -1.261 -0.071 -0.845 C17 0YL 5
R4B C16 C16 C 0 1 N N N N N N -8.251 24.043 -3.452 -0.617 -1.010 -1.868 C16 0YL 6
R4B C14 C14 C 0 1 Y N N N N N -5.758 23.973 -4.425 1.774 -1.366 -1.037 C14 0YL 7
R4B C13 C13 C 0 1 Y N N N N N -5.190 23.135 -5.402 3.023 -0.838 -1.467 C13 0YL 8
R4B C12 C12 C 0 1 Y N N N N N -3.788 23.105 -5.885 4.360 -1.129 -0.893 C12 0YL 9
R4B C11 C11 C 0 1 Y N N N N N -3.443 22.252 -6.928 4.480 -2.009 0.183 C11 0YL 10
R4B C10 C10 C 0 1 Y N N N N N -2.119 22.203 -7.368 5.720 -2.279 0.717 C10 0YL 11
R4B C7 C7 C 0 1 Y N N N N N -1.165 23.002 -6.743 6.857 -1.673 0.182 C7 0YL 12
R4B C8 C8 C 0 1 Y N N N N N -1.521 23.826 -5.681 6.737 -0.794 -0.894 C8 0YL 13
R4B C9 C9 C 0 1 Y N N N N N -2.833 23.878 -5.241 5.496 -0.528 -1.431 C9 0YL 14
R4B C15 C15 C 0 1 Y N N N N N -7.093 23.579 -4.314 0.875 -0.799 -1.873 C15 0YL 15
R4B CL1 CL1 CL 0 0 N N N N N N 3.199 20.470 -8.322 11.989 -0.882 0.102 CL1 0YL 16
R4B C1 C1 C 0 1 Y N N N N N 2.314 21.938 -7.804 10.571 -1.633 0.764 C1 0YL 17
R4B C2 C2 C 0 1 Y N N N N N 0.953 21.860 -7.500 9.329 -1.359 0.224 C2 0YL 18
R4B C3 C3 C 0 1 Y N N N N N 2.998 23.144 -7.706 10.687 -2.510 1.829 C3 0YL 19
R4B C4 C4 C 0 1 Y N N N N N 2.328 24.290 -7.303 9.561 -3.112 2.361 C4 0YL 20
R4B C5 C5 C 0 1 Y N N N N N 0.974 24.216 -7.003 8.315 -2.841 1.833 C5 0YL 21
R4B C6 C6 C 0 1 Y N N N N N 0.280 23.012 -7.118 8.193 -1.963 0.757 C6 0YL 22
R4B C18 C18 C 0 1 N N N N N N -9.253 25.559 -1.801 -2.752 -0.392 -0.726 C18 0YL 23
R4B P1 P1 P 0 1 N N N N N N -8.764 24.848 -0.202 -2.971 -1.907 0.264 P1 0YL 24
R4B O2 O2 O 0 1 N N N N N N -7.326 25.237 0.062 -2.414 -1.660 1.754 O2 0YL 25
R4B O3 O3 O 0 1 N N N N N N -9.067 23.373 -0.197 -2.222 -3.019 -0.364 O3 0YL 26
R4B C19 C19 C 0 1 Y N N N N N -9.778 25.593 1.006 -4.733 -2.332 0.339 C19 0YL 27
R4B C20 C20 C 0 1 Y N N N N N -9.211 25.949 2.218 -5.286 -3.157 -0.622 C20 0YL 28
R4B C21 C21 C 0 1 Y N N N N N -10.000 26.534 3.203 -6.629 -3.480 -0.566 C21 0YL 29
R4B C22 C22 C 0 1 Y N N N N N -11.347 26.744 2.964 -7.419 -2.978 0.453 C22 0YL 30
R4B BR1 BR1 BR 0 0 N N N N N N -12.374 27.544 4.351 -9.255 -3.421 0.532 BR1 0YL 31
R4B C23 C23 C 0 1 Y N N N N N -11.921 26.372 1.750 -6.864 -2.152 1.415 C23 0YL 32
R4B C24 C24 C 0 1 Y N N N N N -11.134 25.794 0.756 -5.520 -1.834 1.360 C24 0YL 33
R4B N2 N2 N 0 1 N N N N N N -7.981 27.501 -4.161 -1.579 2.363 -0.545 N ALA 34
R4B C26 C26 C 0 1 N N S N N N -8.469 28.501 -5.106 -1.412 3.751 -0.982 CA ALA 35
R4B C30 C30 C 0 1 N N N N N N -7.764 28.438 -6.461 -1.461 4.665 0.216 C ALA 36
R4B O7 O7 O 0 1 N N N N N N -6.602 28.025 -6.558 -1.620 4.202 1.325 O ALA 37
R4B C27 C27 C 0 1 N N N N N N -8.356 29.892 -4.507 -2.537 4.120 -1.951 CB ALA 38
R4B N3 N3 N 0 1 N N N N N N -8.474 28.834 -7.512 -1.328 5.996 0.054 N ALA 39
R4B C31 C31 C 0 1 N N S N N N -7.846 28.979 -8.815 -1.376 6.884 1.218 CA ALA 40
R4B C35 C35 C 0 1 N N N N N N -6.769 30.060 -8.719 -1.816 8.258 0.784 C ALA 41
R4B O10 O10 O 0 1 N N N N N N -5.602 29.827 -9.049 -2.065 8.475 -0.383 O ALA 42
R4B C32 C32 C 0 1 N N N N N N -8.885 29.338 -9.875 0.014 6.970 1.852 CB ALA 43
R4B N4 N4 N 0 1 N N N N N N -7.165 31.238 -8.245 -1.933 9.247 1.693 N NH2 44
R4B H1 H1 H 0 1 N N N N N N -7.195 25.714 -2.530 -0.781 -0.207 0.125 H10 0YL 45
R4B H2 H2 H 0 1 N N N N N N -9.165 23.960 -4.058 -0.837 -2.043 -1.601 H8 0YL 46
R4B H3 H3 H 0 1 N N N N N N -8.316 23.359 -2.593 -1.018 -0.796 -2.859 H9 0YL 47
R4B H4 H4 H 0 1 N N N N N N -5.263 24.759 -3.874 1.587 -2.058 -0.229 H7 0YL 48
R4B H5 H5 H 0 1 N N N N N N -4.194 21.632 -7.394 3.600 -2.478 0.597 H17 0YL 49
R4B H6 H6 H 0 1 N N N N N N -1.838 21.553 -8.183 5.813 -2.960 1.550 H18 0YL 50
R4B H7 H7 H 0 1 N N N N N N -0.769 24.430 -5.196 7.617 -0.324 -1.309 H5 0YL 51
R4B H8 H8 H 0 1 N N N N N N -3.108 24.510 -4.410 5.404 0.150 -2.267 H6 0YL 52
R4B H9 H9 H 0 1 N N N N N N 0.432 20.916 -7.561 9.240 -0.678 -0.609 H1 0YL 53
R4B H10 H10 H 0 1 N N N N N N 4.051 23.189 -7.943 11.660 -2.725 2.245 H2 0YL 54
R4B H11 H11 H 0 1 N N N N N N 2.854 25.230 -7.223 9.657 -3.796 3.191 H3 0YL 55
R4B H12 H12 H 0 1 N N N N N N 0.452 25.103 -6.676 7.437 -3.312 2.249 H4 0YL 56
R4B H13 H13 H 0 1 N N N N N N -9.482 26.624 -1.645 -3.264 0.437 -0.239 H12 0YL 57
R4B H14 H14 H 0 1 N N N N N N -10.157 25.036 -2.145 -3.171 -0.544 -1.721 H11 0YL 58
R4B H15 H15 H 0 1 N N N N N N -6.805 24.454 0.198 -2.860 -0.943 2.227 H31 0YL 59
R4B H16 H16 H 0 1 N N N N N N -8.161 25.773 2.398 -4.670 -3.548 -1.418 H13 0YL 60
R4B H17 H17 H 0 1 N N N N N N -9.564 26.822 4.148 -7.062 -4.124 -1.317 H14 0YL 61
R4B H18 H18 H 0 1 N N N N N N -12.975 26.532 1.580 -7.481 -1.760 2.210 H15 0YL 62
R4B H19 H19 H 0 1 N N N N N N -11.567 25.507 -0.191 -5.086 -1.193 2.114 H16 0YL 63
R4B H20 H20 H 0 1 N N N N N N -7.150 27.674 -3.633 -2.044 2.168 0.285 H ALA 64
R4B H21 H21 H 0 1 N N N N N N -9.537 28.308 -5.286 -0.450 3.861 -1.483 HA ALA 65
R4B H22 H22 H 0 1 N N N N N N -8.869 29.916 -3.534 -2.412 5.153 -2.276 HB1 ALA 66
R4B H23 H23 H 0 1 N N N N N N -7.295 30.146 -4.368 -2.501 3.460 -2.817 HB2 ALA 67
R4B H24 H24 H 0 1 N N N N N N -8.822 30.622 -5.185 -3.498 4.011 -1.450 HB3 ALA 68
R4B H25 H25 H 0 1 N N N N N N -9.448 29.034 -7.406 -1.200 6.366 -0.833 H ALA 69
R4B H26 H26 H 0 1 N N N N N N -7.367 28.031 -9.101 -2.083 6.489 1.947 HA ALA 70
R4B H27 H27 H 0 1 N N N N N N -9.647 28.547 -9.925 0.722 7.365 1.122 HB1 ALA 71
R4B H28 H28 H 0 1 N N N N N N -9.364 30.292 -9.610 -0.021 7.630 2.718 HB2 ALA 72
R4B H29 H29 H 0 1 N N N N N N -8.392 29.434 -10.854 0.333 5.976 2.165 HB3 ALA 73
R4B H30 H30 H 0 1 N N N N N N -6.506 31.983 -8.143 -1.733 9.074 2.626 HN1 NH2 74
R4B H31 H31 H 0 1 N N N N N N -8.122 31.379 -7.991 -2.216 10.131 1.413 HN2 NH2 75
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
R4B C32 C31 SING N N 1
R4B O10 C35 DOUB N N 2
R4B C31 C35 SING N N 3
R4B C31 N3 SING N N 4
R4B C35 N4 SING N N 5
R4B CL1 C1 SING N N 6
R4B C1 C3 DOUB Y N 7
R4B C1 C2 SING Y N 8
R4B C3 C4 SING Y N 9
R4B N3 C30 SING N N 10
R4B C2 C6 DOUB Y N 11
R4B C10 C11 DOUB Y N 12
R4B C10 C7 SING Y N 13
R4B C4 C5 DOUB Y N 14
R4B C6 C5 SING Y N 15
R4B C6 C7 SING N N 16
R4B C11 C12 SING Y N 17
R4B C7 C8 DOUB Y N 18
R4B O7 C30 DOUB N N 19
R4B C30 C26 SING N N 20
R4B C12 C13 SING N N 21
R4B C12 C9 DOUB Y N 22
R4B N1 C13 DOUB Y N 23
R4B N1 O1 SING Y N 24
R4B C8 C9 SING Y N 25
R4B C13 C14 SING Y N 26
R4B O1 C15 SING Y N 27
R4B C26 C27 SING N N 28
R4B C26 N2 SING N N 29
R4B O4 C25 DOUB N N 30
R4B C14 C15 DOUB Y N 31
R4B C15 C16 SING N N 32
R4B N2 C25 SING N N 33
R4B C25 C17 SING N N 34
R4B C16 C17 SING N N 35
R4B C17 C18 SING N N 36
R4B C18 P1 SING N N 37
R4B P1 O3 DOUB N N 38
R4B P1 O2 SING N N 39
R4B P1 C19 SING N N 40
R4B C24 C19 DOUB Y N 41
R4B C24 C23 SING Y N 42
R4B C19 C20 SING Y N 43
R4B C23 C22 DOUB Y N 44
R4B C20 C21 DOUB Y N 45
R4B C22 C21 SING Y N 46
R4B C22 BR1 SING N N 47
R4B C17 H1 SING N N 48
R4B C16 H2 SING N N 49
R4B C16 H3 SING N N 50
R4B C14 H4 SING N N 51
R4B C11 H5 SING N N 52
R4B C10 H6 SING N N 53
R4B C8 H7 SING N N 54
R4B C9 H8 SING N N 55
R4B C2 H9 SING N N 56
R4B C3 H10 SING N N 57
R4B C4 H11 SING N N 58
R4B C5 H12 SING N N 59
R4B C18 H13 SING N N 60
R4B C18 H14 SING N N 61
R4B O2 H15 SING N N 62
R4B C20 H16 SING N N 63
R4B C21 H17 SING N N 64
R4B C23 H18 SING N N 65
R4B C24 H19 SING N N 66
R4B N2 H20 SING N N 67
R4B C26 H21 SING N N 68
R4B C27 H22 SING N N 69
R4B C27 H23 SING N N 70
R4B C27 H24 SING N N 71
R4B N3 H25 SING N N 72
R4B C31 H26 SING N N 73
R4B C32 H27 SING N N 74
R4B C32 H28 SING N N 75
R4B C32 H29 SING N N 76
R4B N4 H30 SING N N 77
R4B N4 H31 SING N N 78
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
R4B SMILES ACDLabs 12.01 O=C(N)C(NC(=O)C(NC(=O)C(CP(=O)(O)c1ccc(Br)cc1)Cc4onc(c3ccc(c2cccc(Cl)c2)cc3)c4)C)C
R4B InChI InChI 1.03 InChI=1S/C31H31BrClN4O6P/c1-18(29(34)38)35-30(39)19(2)36-31(40)23(17-44(41,42)27-12-10-24(32)11-13-27)15-26-16-28(37-43-26)21-8-6-20(7-9-21)22-4-3-5-25(33)14-22/h3-14,16,18-19,23H,15,17H2,1-2H3,(H2,34,38)(H,35,39)(H,36,40)(H,41,42)/t18-,19-,23+/m0/s1
R4B InChIKey InChI 1.03 LIUMDGLYGBIKBM-SFYKDHMMSA-N
R4B SMILES_CANONICAL CACTVS 3.370 C[C@H](NC(=O)[C@H](C)NC(=O)[C@H](Cc1onc(c1)c2ccc(cc2)c3cccc(Cl)c3)C[P](O)(=O)c4ccc(Br)cc4)C(N)=O
R4B SMILES CACTVS 3.370 C[CH](NC(=O)[CH](C)NC(=O)[CH](Cc1onc(c1)c2ccc(cc2)c3cccc(Cl)c3)C[P](O)(=O)c4ccc(Br)cc4)C(N)=O
R4B SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 C[C@@H](C(=O)N)NC(=O)[C@H](C)NC(=O)[C@H](Cc1cc(no1)c2ccc(cc2)c3cccc(c3)Cl)CP(=O)(c4ccc(cc4)Br)O
R4B SMILES "OpenEye OEToolkits" 1.7.6 CC(C(=O)N)NC(=O)C(C)NC(=O)C(Cc1cc(no1)c2ccc(cc2)c3cccc(c3)Cl)CP(=O)(c4ccc(cc4)Br)O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
R4B "SYSTEMATIC NAME" ACDLabs 12.01 "N-[(2S)-3-[(R)-(4-bromophenyl)(hydroxy)phosphoryl]-2-{[3-(3'-chlorobiphenyl-4-yl)-1,2-oxazol-5-yl]methyl}propanoyl]-L-alanyl-L-alaninamide"
R4B "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(2S)-3-[[(2S)-1-[[(2S)-1-azanyl-1-oxidanylidene-propan-2-yl]amino]-1-oxidanylidene-propan-2-yl]amino]-2-[[3-[4-(3-chlorophenyl)phenyl]-1,2-oxazol-5-yl]methyl]-3-oxidanylidene-propyl]-(4-bromophenyl)phosphinic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
R4B 'Create component' 2012-10-04 RCSB
R4B 'Initial release' 2013-02-01 RCSB
R4B 'Modify synonyms' 2020-06-05 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id R4B
_pdbx_chem_comp_synonyms.name RXP470B
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_synonyms.comp_id R4B
_pdbe_chem_comp_synonyms.name RXP470B
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
R4B O4 O 8.085 4.750 1
R4B N1 N 5.579 -1.845 2
R4B O1 O 6.042 -0.418 3
R4B C25 C 8.695 3.379 4
R4B C17 C 7.814 2.166 5
R4B C16 C 8.424 0.795 6
R4B C14 C 8.006 -1.845 7
R4B C13 C 6.792 -2.726 8
R4B C12 C 6.792 -4.226 9
R4B C11 C 5.493 -4.976 10
R4B C10 C 5.493 -6.476 11
R4B C7 C 6.792 -7.226 12
R4B C8 C 8.091 -6.476 13
R4B C9 C 8.091 -4.976 14
R4B C15 C 7.542 -0.418 15
R4B CL1 Cl 4.194 -11.726 16
R4B C1 C 5.493 -10.976 17
R4B C2 C 5.493 -9.476 18
R4B C3 C 6.792 -11.726 19
R4B C4 C 8.091 -10.976 20
R4B C5 C 8.091 -9.476 21
R4B C6 C 6.792 -8.726 22
R4B C18 C 6.322 2.322 23
R4B P1 P 5.712 3.693 24
R4B O2 O 7.082 4.303 25
R4B O3 O 4.342 3.083 26
R4B C19 C 5.102 5.063 27
R4B C20 C 3.610 5.220 28
R4B C21 C 3.000 6.590 29
R4B C22 C 3.882 7.804 30
R4B BR1 Br 3.272 9.174 31
R4B C23 C 5.373 7.647 32
R4B C24 C 5.984 6.277 33
R4B N2 N 10.187 3.222 34
R4B C26 C 11.069 4.436 35
R4B C30 C 10.459 5.806 36
R4B O7 O 8.967 5.963 37
R4B C27 C 12.561 4.279 38
R4B N3 N 11.341 7.020 39
R4B C31 C 10.730 8.390 40
R4B C35 C 11.612 9.604 41
R4B O10 O 13.104 9.447 42
R4B C32 C 9.239 8.547 43
R4B N4 N 11.002 10.974 44
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
R4B C31 C32 SINGLE BEGINWEDGE 1
R4B O10 C35 DOUBLE NONE 2
R4B C31 C35 SINGLE NONE 3
R4B C31 N3 SINGLE NONE 4
R4B C35 N4 SINGLE NONE 5
R4B CL1 C1 SINGLE NONE 6
R4B C1 C3 DOUBLE NONE 7
R4B C1 C2 SINGLE NONE 8
R4B C3 C4 SINGLE NONE 9
R4B N3 C30 SINGLE NONE 10
R4B C2 C6 DOUBLE NONE 11
R4B C10 C11 DOUBLE NONE 12
R4B C10 C7 SINGLE NONE 13
R4B C4 C5 DOUBLE NONE 14
R4B C6 C5 SINGLE NONE 15
R4B C6 C7 SINGLE NONE 16
R4B C11 C12 SINGLE NONE 17
R4B C7 C8 DOUBLE NONE 18
R4B O7 C30 DOUBLE NONE 19
R4B C30 C26 SINGLE NONE 20
R4B C12 C13 SINGLE NONE 21
R4B C12 C9 DOUBLE NONE 22
R4B N1 C13 DOUBLE NONE 23
R4B N1 O1 SINGLE NONE 24
R4B C8 C9 SINGLE NONE 25
R4B C13 C14 SINGLE NONE 26
R4B O1 C15 SINGLE NONE 27
R4B C26 C27 SINGLE BEGINDASH 28
R4B C26 N2 SINGLE NONE 29
R4B O4 C25 DOUBLE NONE 30
R4B C14 C15 DOUBLE NONE 31
R4B C15 C16 SINGLE NONE 32
R4B N2 C25 SINGLE NONE 33
R4B C25 C17 SINGLE NONE 34
R4B C17 C16 SINGLE BEGINDASH 35
R4B C17 C18 SINGLE NONE 36
R4B C18 P1 SINGLE NONE 37
R4B P1 O3 DOUBLE NONE 38
R4B P1 O2 SINGLE BEGINWEDGE 39
R4B P1 C19 SINGLE NONE 40
R4B C24 C19 SINGLE NONE 41
R4B C24 C23 DOUBLE NONE 42
R4B C19 C20 DOUBLE NONE 43
R4B C23 C22 SINGLE NONE 44
R4B C20 C21 SINGLE NONE 45
R4B C22 C21 DOUBLE NONE 46
R4B C22 BR1 SINGLE NONE 47
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
R4B MurckoScaffold S1 scaffold 'O=[PH](CCCc1cc(-c2ccc(-c3ccccc3)cc2)no1)c1ccccc1' InChI=1S/C24H22NO2P/c26-28(23-11-5-2-6-12-23)17-7-10-22-18-24(25-27-22)21-15-13-20(14-16-21)19-8-3-1-4-9-19/h1-6,8-9,11-16,18,28H,7,10,17H2 UFFSEFXDELAVTL-UHFFFAOYSA-N
R4B amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
R4B isoxazole F2 fragment c1cnoc1 InChI=1S/C3H3NO/c1-2-4-5-3-1/h1-3H CTAPFRYPJLPFDF-UHFFFAOYSA-N
R4B peptide F3 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
R4B phenyl F4 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
R4B N1 S1 1
R4B O1 S1 1
R4B C17 S1 1
R4B C16 S1 1
R4B C14 S1 1
R4B C13 S1 1
R4B C12 S1 1
R4B C11 S1 1
R4B C10 S1 1
R4B C7 S1 1
R4B C8 S1 1
R4B C9 S1 1
R4B C15 S1 1
R4B C1 S1 1
R4B C2 S1 1
R4B C3 S1 1
R4B C4 S1 1
R4B C5 S1 1
R4B C6 S1 1
R4B C18 S1 1
R4B P1 S1 1
R4B O3 S1 1
R4B C19 S1 1
R4B C20 S1 1
R4B C21 S1 1
R4B C22 S1 1
R4B C23 S1 1
R4B C24 S1 1
R4B N2 F1 1
R4B C25 F1 1
R4B O4 F1 1
R4B C17 F1 1
R4B N3 F1 2
R4B C30 F1 2
R4B O7 F1 2
R4B C26 F1 2
R4B N4 F1 3
R4B C35 F1 3
R4B O10 F1 3
R4B C31 F1 3
R4B C15 F2 1
R4B C14 F2 1
R4B C13 F2 1
R4B N1 F2 1
R4B O1 F2 1
R4B O7 F3 1
R4B C30 F3 1
R4B C26 F3 1
R4B N2 F3 1
R4B O10 F3 2
R4B C35 F3 2
R4B C31 F3 2
R4B N3 F3 2
R4B C12 F4 1
R4B C11 F4 1
R4B C10 F4 1
R4B C7 F4 1
R4B C8 F4 1
R4B C9 F4 1
R4B C1 F4 2
R4B C3 F4 2
R4B C4 F4 2
R4B C5 F4 2
R4B C6 F4 2
R4B C2 F4 2
R4B C19 F4 3
R4B C24 F4 3
R4B C23 F4 3
R4B C22 F4 3
R4B C21 F4 3
R4B C20 F4 3
#
_pdbe_chem_comp_rdkit_properties.comp_id R4B
_pdbe_chem_comp_rdkit_properties.exactmw 700.085
_pdbe_chem_comp_rdkit_properties.amw 701.942
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 10
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 5
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 15
_pdbe_chem_comp_rdkit_properties.NumHBD 4
_pdbe_chem_comp_rdkit_properties.NumHBA 7
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 44
_pdbe_chem_comp_rdkit_properties.NumAtoms 75
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 13
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 3
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.226
_pdbe_chem_comp_rdkit_properties.NumRings 4
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 4
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 4
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 311.356
_pdbe_chem_comp_rdkit_properties.tpsa 164.620
_pdbe_chem_comp_rdkit_properties.CrippenClogP 3.859
_pdbe_chem_comp_rdkit_properties.CrippenMR 169.541
_pdbe_chem_comp_rdkit_properties.chi0v 24.178
_pdbe_chem_comp_rdkit_properties.chi1v 13.827
_pdbe_chem_comp_rdkit_properties.chi2v 6.501
_pdbe_chem_comp_rdkit_properties.chi3v 6.501
_pdbe_chem_comp_rdkit_properties.chi4v 4.004
_pdbe_chem_comp_rdkit_properties.chi0n 51.941
_pdbe_chem_comp_rdkit_properties.chi1n 26.228
_pdbe_chem_comp_rdkit_properties.chi2n 4.585
_pdbe_chem_comp_rdkit_properties.chi3n 4.585
_pdbe_chem_comp_rdkit_properties.chi4n 2.700
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.760
_pdbe_chem_comp_rdkit_properties.kappa1 11.242
_pdbe_chem_comp_rdkit_properties.kappa2 14.348
_pdbe_chem_comp_rdkit_properties.kappa3 8.663
_pdbe_chem_comp_rdkit_properties.Phi 3.666
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
R4B UniChem ChEMBL CHEMBL2316257
R4B UniChem PDBe R4B
R4B UniChem ZINC ZINC000095596711
R4B UniChem 'PubChem TPHARMA' 163563470
R4B UniChem PubChem 70698422
R4B UniChem BindingDb 50426080
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
R4B O4 -1.787 -0.802 2.588 ETKDGv3 1
R4B N1 0.501 -1.605 -0.485 ETKDGv3 2
R4B O1 -0.823 -1.520 -0.129 ETKDGv3 3
R4B C25 -2.898 -0.481 2.081 ETKDGv3 4
R4B C17 -2.978 0.673 1.109 ETKDGv3 5
R4B C16 -2.739 0.162 -0.331 ETKDGv3 6
R4B C14 -0.373 0.362 -1.182 ETKDGv3 7
R4B C13 0.804 -0.512 -1.108 ETKDGv3 8
R4B C12 2.158 -0.228 -1.636 ETKDGv3 9
R4B C11 3.226 -1.253 -1.514 ETKDGv3 10
R4B C10 4.457 -1.011 -1.980 ETKDGv3 11
R4B C7 4.779 0.288 -2.626 ETKDGv3 12
R4B C8 3.808 1.213 -2.740 ETKDGv3 13
R4B C9 2.449 0.946 -2.226 ETKDGv3 14
R4B C15 -1.333 -0.309 -0.565 ETKDGv3 15
R4B CL1 9.990 -0.120 -2.049 ETKDGv3 16
R4B C1 8.592 0.418 -2.962 ETKDGv3 17
R4B C2 7.231 0.145 -2.450 ETKDGv3 18
R4B C3 8.755 1.077 -4.116 ETKDGv3 19
R4B C4 7.576 1.528 -4.880 ETKDGv3 20
R4B C5 6.342 1.283 -4.421 ETKDGv3 21
R4B C6 6.147 0.555 -3.137 ETKDGv3 22
R4B C18 -2.033 1.822 1.535 ETKDGv3 23
R4B P1 -2.405 3.400 0.696 ETKDGv3 24
R4B O2 -4.031 3.805 0.941 ETKDGv3 25
R4B O3 -2.132 3.296 -0.787 ETKDGv3 26
R4B C19 -1.341 4.661 1.398 ETKDGv3 27
R4B C20 -1.762 5.416 2.426 ETKDGv3 28
R4B C21 -0.859 6.420 3.026 ETKDGv3 29
R4B C22 0.388 6.567 2.560 ETKDGv3 30
R4B BR1 1.560 7.860 3.336 ETKDGv3 31
R4B C23 0.863 5.720 1.445 ETKDGv3 32
R4B C24 0.044 4.814 0.896 ETKDGv3 33
R4B N2 -4.073 -1.253 2.372 ETKDGv3 34
R4B C26 -4.004 -2.597 2.946 ETKDGv3 35
R4B C30 -4.036 -3.610 1.831 ETKDGv3 36
R4B O7 -5.139 -4.063 1.419 ETKDGv3 37
R4B C27 -5.152 -2.801 3.940 ETKDGv3 38
R4B N3 -2.814 -3.992 1.182 ETKDGv3 39
R4B C31 -2.793 -4.865 0.004 ETKDGv3 40
R4B C35 -1.428 -5.483 -0.162 ETKDGv3 41
R4B O10 -0.433 -4.753 -0.420 ETKDGv3 42
R4B C32 -3.182 -4.073 -1.248 ETKDGv3 43
R4B N4 -1.246 -6.891 -0.012 ETKDGv3 44
R4B H1 -4.017 1.066 1.153 ETKDGv3 45
R4B H2 -3.428 -0.686 -0.537 ETKDGv3 46
R4B H3 -3.000 0.952 -1.065 ETKDGv3 47
R4B H4 -0.460 1.344 -1.626 ETKDGv3 48
R4B H5 3.016 -2.209 -1.053 ETKDGv3 49
R4B H6 5.214 -1.781 -1.896 ETKDGv3 50
R4B H7 4.009 2.178 -3.188 ETKDGv3 51
R4B H8 1.704 1.723 -2.332 ETKDGv3 52
R4B H9 7.126 -0.370 -1.504 ETKDGv3 53
R4B H10 9.747 1.282 -4.496 ETKDGv3 54
R4B H11 7.712 2.052 -5.817 ETKDGv3 55
R4B H12 5.488 1.604 -5.004 ETKDGv3 56
R4B H13 -0.970 1.557 1.360 ETKDGv3 57
R4B H14 -2.152 2.003 2.625 ETKDGv3 58
R4B H15 -4.155 4.659 0.454 ETKDGv3 59
R4B H16 -2.760 5.297 2.828 ETKDGv3 60
R4B H17 -1.213 7.032 3.846 ETKDGv3 61
R4B H18 1.874 5.830 1.075 ETKDGv3 62
R4B H19 0.400 4.191 0.085 ETKDGv3 63
R4B H20 -4.984 -0.939 1.967 ETKDGv3 64
R4B H21 -3.058 -2.725 3.517 ETKDGv3 65
R4B H22 -5.065 -2.066 4.768 ETKDGv3 66
R4B H23 -5.108 -3.824 4.371 ETKDGv3 67
R4B H24 -6.136 -2.659 3.444 ETKDGv3 68
R4B H25 -1.918 -3.580 1.531 ETKDGv3 69
R4B H26 -3.536 -5.681 0.144 ETKDGv3 70
R4B H27 -4.208 -3.662 -1.138 ETKDGv3 71
R4B H28 -3.167 -4.737 -2.139 ETKDGv3 72
R4B H29 -2.480 -3.229 -1.414 ETKDGv3 73
R4B H30 -0.298 -7.313 -0.124 ETKDGv3 74
R4B H31 -2.052 -7.516 0.213 ETKDGv3 75
#