data_R5Y
#
_chem_comp.id R5Y
_chem_comp.name 4-[1-(but-3-en-1-yl)-1H-pyrazol-4-yl]-N-[4-(piperidin-4-yl)phenyl]-7H-pyrrolo[2,3-d]pyrimidin-2-amine
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C24 H27 N7"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2020-01-30
_chem_comp.pdbx_modified_date 2021-02-12
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 413.518
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code R5Y
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6VNM
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
R5Y C10 C1 C 0 1 Y N N N N N 44.900 -2.435 -33.330 -2.716 2.192 -1.024 C10 R5Y 1
R5Y C13 C2 C 0 1 N N N N N N 44.416 -0.477 -36.567 -6.219 1.051 -0.206 C13 R5Y 2
R5Y C15 C3 C 0 1 N N N N N N 43.607 0.651 -38.648 -8.232 1.077 1.271 C15 R5Y 3
R5Y C17 C4 C 0 1 N N N N N N 45.884 -0.280 -38.567 -8.193 -0.414 -0.640 C17 R5Y 4
R5Y C20 C5 C 0 1 Y N N N N N 43.532 -3.727 -34.813 -2.580 0.304 0.459 C20 R5Y 5
R5Y C22 C6 C 0 1 Y N N N N N 45.994 -3.932 -29.638 2.297 -0.757 -0.070 C22 R5Y 6
R5Y C24 C7 C 0 1 Y N N N N N 47.526 -2.642 -27.960 4.541 0.326 -0.566 C24 R5Y 7
R5Y C26 C8 C 0 1 N N N N N N 48.912 -0.924 -26.876 6.982 0.874 -0.647 C26 R5Y 8
R5Y C28 C9 C 0 1 N N N N N N 46.657 -0.144 -26.022 8.953 2.154 0.147 C28 R5Y 9
R5Y C02 C10 C 0 1 Y N N N N N 45.709 -6.865 -27.449 1.073 -4.190 -0.086 C02 R5Y 10
R5Y C03 C11 C 0 1 Y N N N N N 46.237 -5.595 -27.622 2.159 -3.402 -0.025 C03 R5Y 11
R5Y C04 C12 C 0 1 Y N N N N N 45.810 -5.116 -28.880 1.684 -2.022 -0.087 C04 R5Y 12
R5Y C05 C13 C 0 1 Y N N N N N 45.035 -6.114 -29.425 0.281 -2.093 -0.186 C05 R5Y 13
R5Y C07 C14 C 0 1 Y N N N N N 44.666 -4.819 -31.323 0.204 0.212 -0.238 C07 R5Y 14
R5Y C09 C15 C 0 1 Y N N N N N 44.176 -3.596 -33.591 -1.953 1.288 -0.296 C09 R5Y 15
R5Y C11 C16 C 0 1 Y N N N N N 44.987 -1.427 -34.280 -4.094 2.114 -0.992 C11 R5Y 16
R5Y C12 C17 C 0 1 Y N N N N N 44.342 -1.573 -35.500 -4.715 1.133 -0.239 C12 R5Y 17
R5Y C14 C18 C 0 1 N N N N N N 43.236 -0.165 -37.411 -6.709 1.222 1.235 C14 R5Y 18
R5Y C18 C19 C 0 1 N N N N N N 45.505 -1.115 -37.345 -6.669 -0.314 -0.733 C18 R5Y 19
R5Y C19 C20 C 0 1 Y N N N N N 43.615 -2.723 -35.765 -3.958 0.229 0.483 C19 R5Y 20
R5Y C23 C21 C 0 1 Y N N N N N 46.822 -2.745 -29.137 3.769 -0.630 0.033 C23 R5Y 21
R5Y C27 C22 C 0 1 N N N N N N 48.047 -0.660 -25.647 7.757 1.347 0.585 C27 R5Y 22
R5Y C29 C23 C 0 1 N N N N N N 45.589 -0.799 -25.615 9.126 3.369 0.605 C29 R5Y 23
R5Y C31 C24 C 0 1 Y N N N N N 46.988 -1.551 -29.827 4.630 -1.472 0.766 C31 R5Y 24
R5Y N01 N1 N 0 1 Y N N N N N 44.994 -7.157 -28.533 -0.057 -3.419 -0.182 N01 R5Y 25
R5Y N06 N2 N 0 1 Y N N N N N 44.474 -5.937 -30.652 -0.412 -0.959 -0.258 N06 R5Y 26
R5Y N08 N3 N 0 1 N N N N N N 44.033 -4.697 -32.633 -0.557 1.367 -0.322 N08 R5Y 27
R5Y N16 N4 N 0 1 N N N N N N 44.703 0.015 -39.416 -8.612 -0.246 0.759 N16 R5Y 28
R5Y N21 N5 N 0 1 Y N N N N N 45.407 -3.835 -30.823 1.523 0.323 -0.153 N21 R5Y 29
R5Y N25 N6 N 0 1 Y N N N N N 48.077 -1.449 -27.943 5.820 0.090 -0.221 N25 R5Y 30
R5Y N30 N7 N 0 1 Y N N N N N 47.764 -0.758 -29.082 5.851 -1.036 0.610 N30 R5Y 31
R5Y H1 H1 H 0 1 N N N N N N 45.399 -2.318 -32.379 -2.231 2.958 -1.612 H1 R5Y 32
R5Y H2 H2 H 0 1 N N N N N N 44.789 0.447 -36.102 -6.641 1.840 -0.830 H2 R5Y 33
R5Y H3 H3 H 0 1 N N N N N N 43.930 1.653 -38.330 -8.583 1.184 2.298 H3 R5Y 34
R5Y H4 H4 H 0 1 N N N N N N 42.722 0.739 -39.296 -8.685 1.850 0.650 H4 R5Y 35
R5Y H5 H5 H 0 1 N N N N N N 46.622 -0.836 -39.164 -8.647 0.366 -1.250 H5 R5Y 36
R5Y H6 H6 H 0 1 N N N N N N 46.326 0.669 -38.228 -8.516 -1.391 -1.001 H6 R5Y 37
R5Y H7 H7 H 0 1 N N N N N N 42.961 -4.619 -35.024 -1.990 -0.400 1.027 H7 R5Y 38
R5Y H8 H8 H 0 1 N N N N N N 47.610 -3.399 -27.194 4.189 1.124 -1.204 H8 R5Y 39
R5Y H9 H9 H 0 1 N N N N N N 49.693 -1.657 -26.626 6.647 1.739 -1.219 H9 R5Y 40
R5Y H10 H10 H 0 1 N N N N N N 49.382 0.015 -27.204 7.630 0.256 -1.268 H10 R5Y 41
R5Y H11 H11 H 0 1 N N N N N N 46.552 0.751 -26.617 9.666 1.730 -0.544 H11 R5Y 42
R5Y H12 H12 H 0 1 N N N N N N 45.852 -7.503 -26.589 1.088 -5.270 -0.062 H12 R5Y 43
R5Y H13 H13 H 0 1 N N N N N N 46.864 -5.066 -26.919 3.186 -3.727 0.056 H13 R5Y 44
R5Y H14 H14 H 0 1 N N N N N N 45.555 -0.532 -34.071 -4.688 2.819 -1.554 H14 R5Y 45
R5Y H15 H15 H 0 1 N N N N N N 42.514 0.410 -36.812 -6.256 0.458 1.866 H15 R5Y 46
R5Y H16 H16 H 0 1 N N N N N N 42.774 -1.109 -37.736 -6.429 2.210 1.600 H16 R5Y 47
R5Y H17 H17 H 0 1 N N N N N N 45.170 -2.108 -37.680 -6.360 -0.423 -1.773 H17 R5Y 48
R5Y H18 H18 H 0 1 N N N N N N 46.389 -1.225 -36.699 -6.215 -1.103 -0.133 H18 R5Y 49
R5Y H19 H19 H 0 1 N N N N N N 43.113 -2.837 -36.714 -4.447 -0.536 1.069 H19 R5Y 50
R5Y H20 H20 H 0 1 N N N N N N 47.937 -1.598 -25.083 7.110 1.965 1.207 H20 R5Y 51
R5Y H21 H21 H 0 1 N N N N N N 48.546 0.091 -25.017 8.093 0.482 1.157 H21 R5Y 52
R5Y H22 H22 H 0 1 N N N N N N 44.604 -0.441 -25.876 9.983 3.947 0.291 H22 R5Y 53
R5Y H23 H23 H 0 1 N N N N N N 45.698 -1.694 -25.021 8.413 3.793 1.296 H23 R5Y 54
R5Y H24 H24 H 0 1 N N N N N N 46.566 -1.308 -30.791 4.332 -2.327 1.355 H24 R5Y 55
R5Y H25 H25 H 0 1 N N N N N N 44.498 -8.013 -28.677 -0.962 -3.762 -0.240 H25 R5Y 56
R5Y H26 H26 H 0 1 N N N N N N 43.434 -5.449 -32.908 -0.122 2.230 -0.400 H26 R5Y 57
R5Y H27 H27 H 0 1 N N N N N N 44.367 -0.841 -39.809 -8.236 -0.980 1.341 H27 R5Y 58
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
R5Y N16 C15 SING N N 1
R5Y N16 C17 SING N N 2
R5Y C15 C14 SING N N 3
R5Y C17 C18 SING N N 4
R5Y C14 C13 SING N N 5
R5Y C18 C13 SING N N 6
R5Y C13 C12 SING N N 7
R5Y C19 C12 DOUB Y N 8
R5Y C19 C20 SING Y N 9
R5Y C12 C11 SING Y N 10
R5Y C20 C09 DOUB Y N 11
R5Y C11 C10 DOUB Y N 12
R5Y C09 C10 SING Y N 13
R5Y C09 N08 SING N N 14
R5Y N08 C07 SING N N 15
R5Y C07 N21 DOUB Y N 16
R5Y C07 N06 SING Y N 17
R5Y N21 C22 SING Y N 18
R5Y N06 C05 DOUB Y N 19
R5Y C31 C23 SING Y N 20
R5Y C31 N30 DOUB Y N 21
R5Y C22 C23 SING N N 22
R5Y C22 C04 DOUB Y N 23
R5Y C05 C04 SING Y N 24
R5Y C05 N01 SING Y N 25
R5Y C23 C24 DOUB Y N 26
R5Y N30 N25 SING Y N 27
R5Y C04 C03 SING Y N 28
R5Y N01 C02 SING Y N 29
R5Y C24 N25 SING Y N 30
R5Y N25 C26 SING N N 31
R5Y C03 C02 DOUB Y N 32
R5Y C26 C27 SING N N 33
R5Y C28 C27 SING N N 34
R5Y C28 C29 DOUB N N 35
R5Y C10 H1 SING N N 36
R5Y C13 H2 SING N N 37
R5Y C15 H3 SING N N 38
R5Y C15 H4 SING N N 39
R5Y C17 H5 SING N N 40
R5Y C17 H6 SING N N 41
R5Y C20 H7 SING N N 42
R5Y C24 H8 SING N N 43
R5Y C26 H9 SING N N 44
R5Y C26 H10 SING N N 45
R5Y C28 H11 SING N N 46
R5Y C02 H12 SING N N 47
R5Y C03 H13 SING N N 48
R5Y C11 H14 SING N N 49
R5Y C14 H15 SING N N 50
R5Y C14 H16 SING N N 51
R5Y C18 H17 SING N N 52
R5Y C18 H18 SING N N 53
R5Y C19 H19 SING N N 54
R5Y C27 H20 SING N N 55
R5Y C27 H21 SING N N 56
R5Y C29 H22 SING N N 57
R5Y C29 H23 SING N N 58
R5Y C31 H24 SING N N 59
R5Y N01 H25 SING N N 60
R5Y N08 H26 SING N N 61
R5Y N16 H27 SING N N 62
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
R5Y SMILES ACDLabs 12.01 c2c(ccc(C1CCNCC1)c2)Nc5nc(c3cn(CC\C=C)nc3)c4ccnc4n5
R5Y InChI InChI 1.03 InChI=1S/C24H27N7/c1-2-3-14-31-16-19(15-27-31)22-21-10-13-26-23(21)30-24(29-22)28-20-6-4-17(5-7-20)18-8-11-25-12-9-18/h2,4-7,10,13,15-16,18,25H,1,3,8-9,11-12,14H2,(H2,26,28,29,30)
R5Y InChIKey InChI 1.03 OZUDWDBQZJPKOG-UHFFFAOYSA-N
R5Y SMILES_CANONICAL CACTVS 3.385 C=CCCn1cc(cn1)c2nc(Nc3ccc(cc3)C4CCNCC4)nc5[nH]ccc25
R5Y SMILES CACTVS 3.385 C=CCCn1cc(cn1)c2nc(Nc3ccc(cc3)C4CCNCC4)nc5[nH]ccc25
R5Y SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 C=CCCn1cc(cn1)c2c3cc[nH]c3nc(n2)Nc4ccc(cc4)C5CCNCC5
R5Y SMILES "OpenEye OEToolkits" 2.0.7 C=CCCn1cc(cn1)c2c3cc[nH]c3nc(n2)Nc4ccc(cc4)C5CCNCC5
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
R5Y "SYSTEMATIC NAME" ACDLabs 12.01 4-[1-(but-3-en-1-yl)-1H-pyrazol-4-yl]-N-[4-(piperidin-4-yl)phenyl]-7H-pyrrolo[2,3-d]pyrimidin-2-amine
R5Y "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 4-(1-but-3-enylpyrazol-4-yl)-~{N}-(4-piperidin-4-ylphenyl)-7~{H}-pyrrolo[2,3-d]pyrimidin-2-amine
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
R5Y 'Create component' 2020-01-30 RCSB
R5Y 'Initial release' 2021-02-17 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
R5Y C10 C 5.598 -3.273 1
R5Y C13 C 4.299 -7.023 2
R5Y C15 C 5.598 -9.273 3
R5Y C17 C 3.000 -9.273 4
R5Y C20 C 3.000 -3.273 5
R5Y C22 C 6.897 1.977 6
R5Y C24 C 5.684 4.359 7
R5Y C26 C 5.265 6.999 8
R5Y C28 C 4.994 9.583 9
R5Y C02 C 10.491 0.477 10
R5Y C03 C 9.616 1.684 11
R5Y C04 C 8.196 1.227 12
R5Y C05 C 8.196 -0.273 13
R5Y C07 C 5.598 -0.273 14
R5Y C09 C 4.299 -2.523 15
R5Y C11 C 5.598 -4.773 16
R5Y C12 C 4.299 -5.523 17
R5Y C14 C 5.598 -7.773 18
R5Y C18 C 3.000 -7.773 19
R5Y C19 C 3.000 -4.773 20
R5Y C23 C 6.897 3.477 21
R5Y C27 C 5.875 8.369 22
R5Y C29 C 5.604 10.953 23
R5Y C31 C 8.111 4.359 24
R5Y N01 N 9.616 -0.730 25
R5Y N06 N 6.897 -1.023 26
R5Y N08 N 4.299 -1.023 27
R5Y N16 N 4.299 -10.023 28
R5Y N21 N 5.598 1.227 29
R5Y N25 N 6.147 5.785 30
R5Y N30 N 7.647 5.785 31
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
R5Y N16 C15 SINGLE NONE 1
R5Y N16 C17 SINGLE NONE 2
R5Y C15 C14 SINGLE NONE 3
R5Y C17 C18 SINGLE NONE 4
R5Y C14 C13 SINGLE NONE 5
R5Y C18 C13 SINGLE NONE 6
R5Y C13 C12 SINGLE NONE 7
R5Y C19 C12 DOUBLE NONE 8
R5Y C19 C20 SINGLE NONE 9
R5Y C12 C11 SINGLE NONE 10
R5Y C20 C09 DOUBLE NONE 11
R5Y C11 C10 DOUBLE NONE 12
R5Y C09 C10 SINGLE NONE 13
R5Y C09 N08 SINGLE NONE 14
R5Y N08 C07 SINGLE NONE 15
R5Y C07 N21 DOUBLE NONE 16
R5Y C07 N06 SINGLE NONE 17
R5Y N21 C22 SINGLE NONE 18
R5Y N06 C05 DOUBLE NONE 19
R5Y C31 C23 SINGLE NONE 20
R5Y C31 N30 DOUBLE NONE 21
R5Y C22 C23 SINGLE NONE 22
R5Y C22 C04 DOUBLE NONE 23
R5Y C05 C04 SINGLE NONE 24
R5Y C05 N01 SINGLE NONE 25
R5Y C23 C24 DOUBLE NONE 26
R5Y N30 N25 SINGLE NONE 27
R5Y C04 C03 SINGLE NONE 28
R5Y N01 C02 SINGLE NONE 29
R5Y C24 N25 SINGLE NONE 30
R5Y N25 C26 SINGLE NONE 31
R5Y C03 C02 DOUBLE NONE 32
R5Y C26 C27 SINGLE NONE 33
R5Y C28 C27 SINGLE NONE 34
R5Y C28 C29 DOUBLE NONE 35
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
R5Y MurckoScaffold S1 scaffold 'c1cc2c(-c3cn[nH]c3)nc(Nc3ccc(C4CCNCC4)cc3)nc2[nH]1' InChI=1S/C20H21N7/c1-3-16(4-2-13(1)14-5-8-21-9-6-14)25-20-26-18(15-11-23-24-12-15)17-7-10-22-19(17)27-20/h1-4,7,10-12,14,21H,5-6,8-9H2,(H,23,24)(H2,22,25,26,27) VTVHMZLKEFVOCM-UHFFFAOYSA-N
R5Y phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
R5Y pyrazole F2 fragment 'c1cn[nH]c1' InChI=1S/C3H4N2/c1-2-4-5-3-1/h1-3H,(H,4,5) WTKZEGDFNFYCGP-UHFFFAOYSA-N
R5Y pyrimidine F3 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
R5Y pyrrole F4 fragment 'c1cc[nH]c1' InChI=1S/C4H5N/c1-2-4-5-3-1/h1-5H KAESVJOAVNADME-UHFFFAOYSA-N
R5Y Z54628578 F5 fragment CNc1ncccn1 InChI=1S/C5H7N3/c1-6-5-7-3-2-4-8-5/h2-4H,1H3,(H,6,7,8) BQNXHDSGGRTFNX-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
R5Y C10 S1 1
R5Y C13 S1 1
R5Y C15 S1 1
R5Y C17 S1 1
R5Y C20 S1 1
R5Y C22 S1 1
R5Y C24 S1 1
R5Y C02 S1 1
R5Y C03 S1 1
R5Y C04 S1 1
R5Y C05 S1 1
R5Y C07 S1 1
R5Y C09 S1 1
R5Y C11 S1 1
R5Y C12 S1 1
R5Y C14 S1 1
R5Y C18 S1 1
R5Y C19 S1 1
R5Y C23 S1 1
R5Y C31 S1 1
R5Y N01 S1 1
R5Y N06 S1 1
R5Y N08 S1 1
R5Y N16 S1 1
R5Y N21 S1 1
R5Y N25 S1 1
R5Y N30 S1 1
R5Y C10 F1 1
R5Y C11 F1 1
R5Y C12 F1 1
R5Y C19 F1 1
R5Y C20 F1 1
R5Y C09 F1 1
R5Y C24 F2 1
R5Y C23 F2 1
R5Y C31 F2 1
R5Y N30 F2 1
R5Y N25 F2 1
R5Y C04 F3 1
R5Y C22 F3 1
R5Y N21 F3 1
R5Y C07 F3 1
R5Y N06 F3 1
R5Y C05 F3 1
R5Y C02 F4 1
R5Y C03 F4 1
R5Y C04 F4 1
R5Y C05 F4 1
R5Y N01 F4 1
R5Y C09 F5 1
R5Y N08 F5 1
R5Y C07 F5 1
R5Y N21 F5 1
R5Y C22 F5 1
R5Y C04 F5 1
R5Y C05 F5 1
R5Y N06 F5 1
#
_pdbe_chem_comp_rdkit_properties.comp_id R5Y
_pdbe_chem_comp_rdkit_properties.exactmw 413.233
_pdbe_chem_comp_rdkit_properties.amw 413.529
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 7
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 7
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 6
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 31
_pdbe_chem_comp_rdkit_properties.NumAtoms 58
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 7
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.292
_pdbe_chem_comp_rdkit_properties.NumRings 5
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 4
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 4
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 219.280
_pdbe_chem_comp_rdkit_properties.tpsa 83.450
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.984
_pdbe_chem_comp_rdkit_properties.CrippenMR 119.051
_pdbe_chem_comp_rdkit_properties.chi0v 15.130
_pdbe_chem_comp_rdkit_properties.chi1v 8.357
_pdbe_chem_comp_rdkit_properties.chi2v 3.709
_pdbe_chem_comp_rdkit_properties.chi3v 3.709
_pdbe_chem_comp_rdkit_properties.chi4v 2.436
_pdbe_chem_comp_rdkit_properties.chi0n 42.130
_pdbe_chem_comp_rdkit_properties.chi1n 21.699
_pdbe_chem_comp_rdkit_properties.chi2n 3.709
_pdbe_chem_comp_rdkit_properties.chi3n 3.709
_pdbe_chem_comp_rdkit_properties.chi4n 2.436
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.450
_pdbe_chem_comp_rdkit_properties.kappa1 5.665
_pdbe_chem_comp_rdkit_properties.kappa2 8.733
_pdbe_chem_comp_rdkit_properties.kappa3 4.224
_pdbe_chem_comp_rdkit_properties.Phi 1.596
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
R5Y UniChem ChEMBL CHEMBL4745155
R5Y UniChem PDBe R5Y
R5Y UniChem PubChem 155570100
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
R5Y C10 1.866 0.141 0.725 ETKDGv3 1
R5Y C13 5.551 1.035 0.247 ETKDGv3 2
R5Y C15 7.466 2.730 0.053 ETKDGv3 3
R5Y C17 7.918 0.373 -0.406 ETKDGv3 4
R5Y C20 2.094 1.153 -1.481 ETKDGv3 5
R5Y C22 -3.088 -1.651 -0.048 ETKDGv3 6
R5Y C24 -5.171 -0.677 -1.001 ETKDGv3 7
R5Y C26 -7.579 0.181 -1.217 ETKDGv3 8
R5Y C28 -6.569 2.200 -0.117 ETKDGv3 9
R5Y C02 -1.889 -4.813 1.136 ETKDGv3 10
R5Y C03 -2.967 -4.074 0.838 ETKDGv3 11
R5Y C04 -2.497 -2.750 0.432 ETKDGv3 12
R5Y C05 -1.070 -2.820 0.514 ETKDGv3 13
R5Y C07 -0.917 -0.647 -0.381 ETKDGv3 14
R5Y C09 1.292 0.574 -0.574 ETKDGv3 15
R5Y C11 3.174 0.285 0.968 ETKDGv3 16
R5Y C12 4.070 0.887 -0.051 ETKDGv3 17
R5Y C14 5.969 2.520 0.357 ETKDGv3 18
R5Y C18 6.421 0.293 -0.780 ETKDGv3 19
R5Y C19 3.539 1.308 -1.216 ETKDGv3 20
R5Y C23 -4.550 -1.506 -0.174 ETKDGv3 21
R5Y C27 -7.787 1.320 -0.213 ETKDGv3 22
R5Y C29 -5.675 2.060 0.866 ETKDGv3 23
R5Y C31 -5.599 -2.102 0.664 ETKDGv3 24
R5Y N01 -0.661 -4.096 0.963 ETKDGv3 25
R5Y N06 -0.298 -1.856 0.120 ETKDGv3 26
R5Y N08 -0.113 0.445 -0.846 ETKDGv3 27
R5Y N16 8.263 1.551 0.415 ETKDGv3 28
R5Y N21 -2.224 -0.570 -0.471 ETKDGv3 29
R5Y N25 -6.566 -0.756 -0.744 ETKDGv3 30
R5Y N30 -6.756 -1.640 0.322 ETKDGv3 31
R5Y H1 1.228 -0.266 1.498 ETKDGv3 32
R5Y H2 5.755 0.561 1.234 ETKDGv3 33
R5Y H3 7.839 3.612 0.617 ETKDGv3 34
R5Y H4 7.605 2.951 -1.029 ETKDGv3 35
R5Y H5 8.527 0.390 -1.336 ETKDGv3 36
R5Y H6 8.204 -0.549 0.148 ETKDGv3 37
R5Y H7 1.693 1.498 -2.426 ETKDGv3 38
R5Y H8 -4.706 -0.014 -1.719 ETKDGv3 39
R5Y H9 -8.539 -0.363 -1.347 ETKDGv3 40
R5Y H10 -7.285 0.591 -2.208 ETKDGv3 41
R5Y H11 -6.390 2.935 -0.895 ETKDGv3 42
R5Y H12 -1.934 -5.850 1.444 ETKDGv3 43
R5Y H13 -3.985 -4.436 0.853 ETKDGv3 44
R5Y H14 3.573 -0.030 1.925 ETKDGv3 45
R5Y H15 5.384 3.158 -0.342 ETKDGv3 46
R5Y H16 5.749 2.877 1.387 ETKDGv3 47
R5Y H17 6.112 -0.774 -0.841 ETKDGv3 48
R5Y H18 6.281 0.743 -1.787 ETKDGv3 49
R5Y H19 4.157 1.768 -1.976 ETKDGv3 50
R5Y H20 -8.058 0.903 0.782 ETKDGv3 51
R5Y H21 -8.640 1.944 -0.554 ETKDGv3 52
R5Y H22 -4.794 2.692 0.892 ETKDGv3 53
R5Y H23 -5.808 1.312 1.642 ETKDGv3 54
R5Y H24 -5.457 -2.775 1.498 ETKDGv3 55
R5Y H25 0.313 -4.457 1.072 ETKDGv3 56
R5Y H26 -0.566 1.150 -1.473 ETKDGv3 57
R5Y H27 8.096 1.328 1.425 ETKDGv3 58
#