data_R6W
#
_chem_comp.id R6W
_chem_comp.name
(3~{S})-5-oxidanyl-3-[2-[[6-[[3-[(1~{S})-6-oxidanyl-3-oxidanylidene-1,2-dihydroisoindol-1-yl]-1~{H}-indol-2-yl]methylamino]hexylamino]methyl]-1~{H}-indol-3-yl]-2,3-dihydroisoindol-1-one
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C40 H40 N6 O4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2020-09-10
_chem_comp.pdbx_modified_date 2020-11-13
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 668.783
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code R6W
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7ACA
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
R6W C4 C1 C 0 1 Y N N N N N 46.209 5.415 82.198 5.728 -0.873 1.511 C4 R6W 1
R6W C5 C2 C 0 1 Y N N N N N 47.178 5.295 83.191 6.585 -1.362 0.556 C5 R6W 2
R6W C6 C3 C 0 1 Y N N N N N 48.101 6.303 83.403 7.470 -2.401 0.864 C6 R6W 3
R6W C7 C4 C 0 1 N N S N N N 47.436 4.162 84.165 6.826 -1.012 -0.891 C7 R6W 4
R6W C15 C5 C 0 1 Y N N N N N 48.651 2.629 82.384 8.580 0.962 -0.628 C15 R6W 5
R6W C17 C6 C 0 1 Y N N N N N 49.494 0.675 81.172 9.649 3.127 -0.661 C17 R6W 6
R6W C20 C7 C 0 1 N N N N N N 46.784 1.245 85.319 5.136 1.344 -2.000 C20 R6W 7
R6W C24 C8 C 0 1 N N N N N N 47.956 0.055 88.735 1.874 1.330 -0.115 C24 R6W 8
R6W C26 C9 C 0 1 N N N N N N 49.402 -1.694 89.919 -0.516 1.348 0.615 C26 R6W 9
R6W C28 C10 C 0 1 N N N N N N 50.582 -3.602 91.098 -2.905 1.365 1.344 C28 R6W 10
R6W C1 C11 C 0 1 Y N N N N N 48.056 7.467 82.641 7.476 -2.939 2.154 C1 R6W 11
R6W C2 C12 C 0 1 Y N N N N N 47.090 7.604 81.658 6.614 -2.445 3.108 C2 R6W 12
R6W C3 C13 C 0 1 Y N N N N N 46.168 6.579 81.435 5.742 -1.409 2.795 C3 R6W 13
R6W N8 N1 N 0 1 N N N N N N 48.597 4.710 84.926 7.887 -1.912 -1.359 N8 R6W 14
R6W C9 C14 C 0 1 N N N N N N 48.990 5.926 84.520 8.255 -2.711 -0.343 C9 R6W 15
R6W O10 O1 O 0 1 N N N N N N 49.911 6.587 84.990 9.115 -3.569 -0.411 O10 R6W 16
R6W C11 C15 C 0 1 Y N N N N N 47.835 2.837 83.556 7.273 0.422 -1.011 C11 R6W 17
R6W C12 C16 C 0 1 Y N N N N N 47.566 1.606 84.078 6.550 1.447 -1.488 C12 R6W 18
R6W N13 N2 N 0 1 Y N N N N N 48.090 0.630 83.265 7.287 2.599 -1.443 N13 R6W 19
R6W C14 C17 C 0 1 Y N N N N N 48.789 1.235 82.234 8.534 2.337 -0.922 C14 R6W 20
R6W C16 C18 C 0 1 Y N N N N N 49.230 3.465 81.426 9.736 0.405 -0.077 C16 R6W 21
R6W C18 C19 C 0 1 Y N N N N N 50.087 1.531 80.254 10.782 2.556 -0.125 C18 R6W 22
R6W C19 C20 C 0 1 Y N N N N N 49.949 2.912 80.375 10.821 1.200 0.169 C19 R6W 23
R6W N21 N3 N 0 1 N N N N N N 47.712 0.790 86.368 4.206 1.314 -0.863 N21 R6W 24
R6W O22 O2 O 0 1 N N N N N N 45.228 6.734 80.462 4.896 -0.927 3.740 O22 R6W 25
R6W C23 C21 C 0 1 N N N N N N 47.022 0.270 87.553 2.811 1.362 -1.324 C23 R6W 26
R6W C25 C22 C 0 1 N N N N N N 48.817 -1.197 88.605 0.422 1.380 -0.594 C25 R6W 27
R6W C27 C23 C 0 1 N N N N N N 50.309 -2.911 89.775 -1.968 1.398 0.135 C27 R6W 28
R6W C29 C24 C 0 1 Y N N N N N 58.548 -5.355 94.184 -7.263 -2.899 -2.225 C29 R6W 29
R6W C30 C25 C 0 1 Y N N N N N 58.568 -5.867 95.470 -6.377 -2.351 -3.126 C30 R6W 30
R6W C31 C26 C 0 1 Y N N N N N 57.395 -5.910 96.224 -5.555 -1.296 -2.747 C31 R6W 31
R6W C32 C27 C 0 1 Y N N N N N 56.188 -5.470 95.679 -5.624 -0.789 -1.453 C32 R6W 32
R6W C33 C28 C 0 1 Y N N N N N 56.183 -4.954 94.383 -6.505 -1.332 -0.551 C33 R6W 33
R6W C34 C29 C 0 1 Y N N N N N 57.352 -4.887 93.647 -7.340 -2.390 -0.926 C34 R6W 34
R6W C35 C30 C 0 1 N N S N N N 55.039 -4.379 93.563 -6.825 -1.028 0.892 C35 R6W 35
R6W N36 N4 N 0 1 N N N N N N 55.750 -4.034 92.303 -7.872 -1.977 1.288 N36 R6W 36
R6W C37 C31 C 0 1 N N N N N N 57.065 -4.300 92.323 -8.168 -2.758 0.235 C37 R6W 37
R6W O38 O3 O 0 1 N N N N N N 57.870 -4.118 91.413 -9.000 -3.645 0.242 O38 R6W 38
R6W C39 C32 C 0 1 Y N N N N N 54.320 -3.168 94.130 -7.329 0.386 1.024 C39 R6W 39
R6W C40 C33 C 0 1 Y N N N N N 53.004 -2.853 93.940 -6.647 1.435 1.510 C40 R6W 40
R6W N41 N5 N 0 1 Y N N N N N 52.709 -1.670 94.579 -7.430 2.557 1.475 N41 R6W 41
R6W C42 C34 C 0 1 Y N N N N N 53.866 -1.172 95.154 -8.665 2.249 0.951 C42 R6W 42
R6W C43 C35 C 0 1 Y N N N N N 54.905 -2.088 94.885 -8.655 0.877 0.640 C43 R6W 43
R6W C44 C36 C 0 1 Y N N N N N 56.185 -1.807 95.367 -9.787 0.280 0.082 C44 R6W 44
R6W C45 C37 C 0 1 Y N N N N N 54.084 -0.001 95.872 -9.811 2.996 0.698 C45 R6W 45
R6W C46 C38 C 0 1 Y N N N N N 55.363 0.245 96.352 -10.920 2.386 0.153 C46 R6W 46
R6W C47 C39 C 0 1 Y N N N N N 56.404 -0.643 96.097 -10.900 1.034 -0.163 C47 R6W 47
R6W C48 C40 C 0 1 N N N N N N 51.925 -3.590 93.196 -5.230 1.384 2.020 C48 R6W 48
R6W N49 N6 N 0 1 N N N N N N 51.596 -2.880 91.925 -4.299 1.413 0.884 N49 R6W 49
R6W O50 O4 O 0 1 N N N N N N 57.478 -6.431 97.484 -4.684 -0.761 -3.639 O50 R6W 50
R6W H1 H1 H 0 1 N N N N N N 45.501 4.618 82.023 5.048 -0.071 1.267 H1 R6W 51
R6W H2 H2 H 0 1 N N N N N N 46.569 4.029 84.829 5.917 -1.171 -1.471 H2 R6W 52
R6W H3 H3 H 0 1 N N N N N N 49.577 -0.396 81.065 9.627 4.184 -0.882 H3 R6W 53
R6W H4 H4 H 0 1 N N N N N N 46.233 2.128 85.675 4.914 2.205 -2.629 H4 R6W 54
R6W H5 H5 H 0 1 N N N N N N 46.073 0.439 85.083 5.027 0.430 -2.583 H5 R6W 55
R6W H6 H6 H 0 1 N N N N N N 48.620 0.928 88.818 2.039 0.412 0.449 H6 R6W 56
R6W H7 H7 H 0 1 N N N N N N 47.349 -0.032 89.648 2.076 2.190 0.524 H7 R6W 57
R6W H8 H8 H 0 1 N N N N N N 49.987 -0.878 90.367 -0.350 0.429 1.178 H8 R6W 58
R6W H9 H9 H 0 1 N N N N N N 48.571 -1.960 90.589 -0.314 2.207 1.254 H9 R6W 59
R6W H10 H10 H 0 1 N N N N N N 49.642 -3.661 91.666 -2.740 0.447 1.908 H10 R6W 60
R6W H11 H11 H 0 1 N N N N N N 50.952 -4.618 90.895 -2.704 2.225 1.983 H11 R6W 61
R6W H12 H12 H 0 1 N N N N N N 48.770 8.258 82.815 8.155 -3.741 2.402 H12 R6W 62
R6W H13 H13 H 0 1 N N N N N N 47.050 8.505 81.063 6.619 -2.862 4.104 H13 R6W 63
R6W H14 H14 H 0 1 N N N N N N 49.042 4.215 85.672 8.260 -1.928 -2.254 H14 R6W 64
R6W H15 H15 H 0 1 N N N N N N 47.984 -0.356 83.396 6.977 3.470 -1.735 H15 R6W 65
R6W H16 H16 H 0 1 N N N N N N 49.119 4.537 81.503 9.773 -0.649 0.155 H16 R6W 66
R6W H17 H17 H 0 1 N N N N N N 50.662 1.122 79.437 11.647 3.171 0.075 H17 R6W 67
R6W H18 H18 H 0 1 N N N N N N 50.407 3.560 79.642 11.717 0.768 0.590 H18 R6W 68
R6W H19 H19 H 0 1 N N N N N N 48.289 0.066 85.991 4.368 0.504 -0.284 H19 R6W 69
R6W H21 H21 H 0 1 N N N N N N 44.677 5.961 80.428 5.261 -0.199 4.260 H21 R6W 70
R6W H22 H22 H 0 1 N N N N N N 46.242 0.987 87.848 2.610 0.503 -1.963 H22 R6W 71
R6W H23 H23 H 0 1 N N N N N N 46.556 -0.692 87.294 2.646 2.281 -1.887 H23 R6W 72
R6W H24 H24 H 0 1 N N N N N N 48.196 -1.999 88.179 0.257 2.299 -1.158 H24 R6W 73
R6W H25 H25 H 0 1 N N N N N N 49.648 -0.974 87.920 0.220 0.521 -1.233 H25 R6W 74
R6W H26 H26 H 0 1 N N N N N N 49.827 -3.630 89.096 -2.133 2.316 -0.428 H26 R6W 75
R6W H27 H27 H 0 1 N N N N N N 51.267 -2.586 89.344 -2.169 0.538 -0.504 H27 R6W 76
R6W H28 H28 H 0 1 N N N N N N 59.456 -5.319 93.600 -7.900 -3.718 -2.524 H28 R6W 77
R6W H29 H29 H 0 1 N N N N N N 59.493 -6.234 95.890 -6.321 -2.742 -4.131 H29 R6W 78
R6W H30 H30 H 0 1 N N N N N N 55.274 -5.528 96.251 -4.984 0.030 -1.158 H30 R6W 79
R6W H31 H31 H 0 1 N N N N N N 54.304 -5.173 93.365 -5.938 -1.168 1.510 H31 R6W 80
R6W H32 H32 H 0 1 N N N N N N 55.288 -3.638 91.509 -8.284 -2.029 2.164 H32 R6W 81
R6W H33 H33 H 0 1 N N N N N N 51.807 -1.241 94.621 -7.155 3.437 1.774 H33 R6W 82
R6W H34 H34 H 0 1 N N N N N N 57.000 -2.489 95.174 -9.782 -0.773 -0.156 H34 R6W 83
R6W H35 H35 H 0 1 N N N N N N 53.280 0.698 96.051 -9.832 4.051 0.928 H35 R6W 84
R6W H36 H36 H 0 1 N N N N N N 55.553 1.137 96.931 -11.808 2.968 -0.042 H36 R6W 85
R6W H37 H37 H 0 1 N N N N N N 57.394 -0.426 96.470 -11.775 0.572 -0.595 H37 R6W 86
R6W H38 H38 H 0 1 N N N N N N 51.024 -3.646 93.824 -5.045 2.244 2.664 H38 R6W 87
R6W H39 H39 H 0 1 N N N N N N 52.274 -4.607 92.964 -5.081 0.466 2.588 H39 R6W 88
R6W H40 H40 H 0 1 N N N N N N 52.434 -2.783 91.388 -4.461 2.224 0.305 H40 R6W 89
R6W H42 H42 H 0 1 N N N N N N 56.622 -6.406 97.894 -5.050 -0.030 -4.156 H42 R6W 90
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
R6W C18 C19 DOUB Y N 1
R6W C18 C17 SING Y N 2
R6W C19 C16 SING Y N 3
R6W O22 C3 SING N N 4
R6W C17 C14 DOUB Y N 5
R6W C16 C15 DOUB Y N 6
R6W C3 C2 DOUB Y N 7
R6W C3 C4 SING Y N 8
R6W C2 C1 SING Y N 9
R6W C4 C5 DOUB Y N 10
R6W C14 C15 SING Y N 11
R6W C14 N13 SING Y N 12
R6W C15 C11 SING Y N 13
R6W C1 C6 DOUB Y N 14
R6W C5 C6 SING Y N 15
R6W C5 C7 SING N N 16
R6W N13 C12 SING Y N 17
R6W C6 C9 SING N N 18
R6W C11 C12 DOUB Y N 19
R6W C11 C7 SING N N 20
R6W C12 C20 SING N N 21
R6W C7 N8 SING N N 22
R6W C9 N8 SING N N 23
R6W C9 O10 DOUB N N 24
R6W C20 N21 SING N N 25
R6W N21 C23 SING N N 26
R6W C23 C24 SING N N 27
R6W C25 C24 SING N N 28
R6W C25 C26 SING N N 29
R6W C27 C26 SING N N 30
R6W C27 C28 SING N N 31
R6W C28 N49 SING N N 32
R6W O38 C37 DOUB N N 33
R6W N49 C48 SING N N 34
R6W N36 C37 SING N N 35
R6W N36 C35 SING N N 36
R6W C37 C34 SING N N 37
R6W C48 C40 SING N N 38
R6W C35 C39 SING N N 39
R6W C35 C33 SING N N 40
R6W C34 C29 DOUB Y N 41
R6W C34 C33 SING Y N 42
R6W C40 C39 DOUB Y N 43
R6W C40 N41 SING Y N 44
R6W C39 C43 SING Y N 45
R6W C29 C30 SING Y N 46
R6W C33 C32 DOUB Y N 47
R6W N41 C42 SING Y N 48
R6W C43 C42 DOUB Y N 49
R6W C43 C44 SING Y N 50
R6W C42 C45 SING Y N 51
R6W C44 C47 DOUB Y N 52
R6W C30 C31 DOUB Y N 53
R6W C32 C31 SING Y N 54
R6W C45 C46 DOUB Y N 55
R6W C47 C46 SING Y N 56
R6W C31 O50 SING N N 57
R6W C4 H1 SING N N 58
R6W C7 H2 SING N N 59
R6W C17 H3 SING N N 60
R6W C20 H4 SING N N 61
R6W C20 H5 SING N N 62
R6W C24 H6 SING N N 63
R6W C24 H7 SING N N 64
R6W C26 H8 SING N N 65
R6W C26 H9 SING N N 66
R6W C28 H10 SING N N 67
R6W C28 H11 SING N N 68
R6W C1 H12 SING N N 69
R6W C2 H13 SING N N 70
R6W N8 H14 SING N N 71
R6W N13 H15 SING N N 72
R6W C16 H16 SING N N 73
R6W C18 H17 SING N N 74
R6W C19 H18 SING N N 75
R6W N21 H19 SING N N 76
R6W O22 H21 SING N N 77
R6W C23 H22 SING N N 78
R6W C23 H23 SING N N 79
R6W C25 H24 SING N N 80
R6W C25 H25 SING N N 81
R6W C27 H26 SING N N 82
R6W C27 H27 SING N N 83
R6W C29 H28 SING N N 84
R6W C30 H29 SING N N 85
R6W C32 H30 SING N N 86
R6W C35 H31 SING N N 87
R6W N36 H32 SING N N 88
R6W N41 H33 SING N N 89
R6W C44 H34 SING N N 90
R6W C45 H35 SING N N 91
R6W C46 H36 SING N N 92
R6W C47 H37 SING N N 93
R6W C48 H38 SING N N 94
R6W C48 H39 SING N N 95
R6W N49 H40 SING N N 96
R6W O50 H42 SING N N 97
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
R6W InChI InChI 1.03 InChI=1S/C40H40N6O4/c47-23-13-15-25-29(19-23)37(45-39(25)49)35-27-9-3-5-11-31(27)43-33(35)21-41-17-7-1-2-8-18-42-22-34-36(28-10-4-6-12-32(28)44-34)38-30-20-24(48)14-16-26(30)40(50)46-38/h3-6,9-16,19-20,37-38,41-44,47-48H,1-2,7-8,17-18,21-22H2,(H,45,49)(H,46,50)/t37-,38-/m0/s1
R6W InChIKey InChI 1.03 LWNXLGGZVHNJBW-UWXQCODUSA-N
R6W SMILES_CANONICAL CACTVS 3.385 Oc1ccc2C(=O)N[C@@H](c2c1)c3c(CNCCCCCCNCc4[nH]c5ccccc5c4[C@H]6NC(=O)c7ccc(O)cc67)[nH]c8ccccc38
R6W SMILES CACTVS 3.385 Oc1ccc2C(=O)N[CH](c2c1)c3c(CNCCCCCCNCc4[nH]c5ccccc5c4[CH]6NC(=O)c7ccc(O)cc67)[nH]c8ccccc38
R6W SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 c1ccc2c(c1)c(c([nH]2)CNCCCCCCNCc3c(c4ccccc4[nH]3)[C@@H]5c6cc(ccc6C(=O)N5)O)[C@@H]7c8cc(ccc8C(=O)N7)O
R6W SMILES "OpenEye OEToolkits" 2.0.7 c1ccc2c(c1)c(c([nH]2)CNCCCCCCNCc3c(c4ccccc4[nH]3)C5c6cc(ccc6C(=O)N5)O)C7c8cc(ccc8C(=O)N7)O
#
_pdbx_chem_comp_identifier.comp_id R6W
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier
(3~{S})-5-oxidanyl-3-[2-[[6-[[3-[(1~{S})-6-oxidanyl-3-oxidanylidene-1,2-dihydroisoindol-1-yl]-1~{H}-indol-2-yl]methylamino]hexylamino]methyl]-1~{H}-indol-3-yl]-2,3-dihydroisoindol-1-one
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
R6W 'Create component' 2020-09-10 PDBE
R6W 'Initial release' 2020-11-18 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
R6W C4 C 5.472 7.194 1
R6W C5 C 6.963 7.032 2
R6W C6 C 7.849 8.242 3
R6W C7 C 7.838 5.824 4
R6W C15 C 5.953 3.942 5
R6W C17 C 4.654 1.692 6
R6W C20 C 9.748 3.192 7
R6W C24 C 12.748 0.594 8
R6W C26 C 14.998 -0.706 9
R6W C28 C 17.248 -2.005 10
R6W C1 C 7.244 9.614 11
R6W C2 C 5.753 9.776 12
R6W C3 C 4.867 8.566 13
R6W N8 N 9.258 6.282 14
R6W C9 C 9.264 7.773 15
R6W O10 O 10.482 8.648 16
R6W C11 C 7.372 4.399 17
R6W C12 C 8.248 3.192 18
R6W N13 N 7.372 1.984 19
R6W C14 C 5.953 2.442 20
R6W C16 C 4.654 4.691 21
R6W C18 C 3.355 2.442 22
R6W C19 C 3.355 3.942 23
R6W N21 N 10.498 1.893 24
R6W O22 O 3.375 8.728 25
R6W C23 C 11.998 1.893 26
R6W C25 C 14.248 0.594 27
R6W C27 C 16.498 -0.706 28
R6W C29 C 18.689 -8.644 29
R6W C30 C 17.390 -7.894 30
R6W C31 C 17.390 -6.394 31
R6W C32 C 18.689 -5.644 32
R6W C33 C 19.988 -6.394 33
R6W C34 C 19.988 -7.894 34
R6W C35 C 21.407 -5.936 35
R6W N36 N 22.283 -7.144 36
R6W C37 C 21.407 -8.351 37
R6W O38 O 21.873 -9.776 38
R6W C39 C 21.873 -4.511 39
R6W C40 C 20.998 -3.304 40
R6W N41 N 21.873 -2.096 41
R6W C42 C 23.293 -2.554 42
R6W C43 C 23.293 -4.054 43
R6W C44 C 24.592 -4.804 44
R6W C45 C 24.592 -1.804 45
R6W C46 C 25.891 -2.554 46
R6W C47 C 25.891 -4.054 47
R6W C48 C 19.498 -3.304 48
R6W N49 N 18.748 -2.005 49
R6W O50 O 16.091 -5.644 50
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
R6W C18 C19 SINGLE NONE 1
R6W C18 C17 DOUBLE NONE 2
R6W C19 C16 DOUBLE NONE 3
R6W O22 C3 SINGLE NONE 4
R6W C17 C14 SINGLE NONE 5
R6W C16 C15 SINGLE NONE 6
R6W C3 C2 SINGLE NONE 7
R6W C3 C4 DOUBLE NONE 8
R6W C2 C1 DOUBLE NONE 9
R6W C4 C5 SINGLE NONE 10
R6W C14 C15 DOUBLE NONE 11
R6W C14 N13 SINGLE NONE 12
R6W C15 C11 SINGLE NONE 13
R6W C1 C6 SINGLE NONE 14
R6W C5 C6 DOUBLE NONE 15
R6W C5 C7 SINGLE NONE 16
R6W N13 C12 SINGLE NONE 17
R6W C6 C9 SINGLE NONE 18
R6W C11 C12 DOUBLE NONE 19
R6W C7 C11 SINGLE BEGINDASH 20
R6W C12 C20 SINGLE NONE 21
R6W C7 N8 SINGLE NONE 22
R6W C9 N8 SINGLE NONE 23
R6W C9 O10 DOUBLE NONE 24
R6W C20 N21 SINGLE NONE 25
R6W N21 C23 SINGLE NONE 26
R6W C23 C24 SINGLE NONE 27
R6W C25 C24 SINGLE NONE 28
R6W C25 C26 SINGLE NONE 29
R6W C27 C26 SINGLE NONE 30
R6W C27 C28 SINGLE NONE 31
R6W C28 N49 SINGLE NONE 32
R6W O38 C37 DOUBLE NONE 33
R6W N49 C48 SINGLE NONE 34
R6W N36 C37 SINGLE NONE 35
R6W N36 C35 SINGLE NONE 36
R6W C37 C34 SINGLE NONE 37
R6W C48 C40 SINGLE NONE 38
R6W C35 C39 SINGLE BEGINWEDGE 39
R6W C35 C33 SINGLE NONE 40
R6W C34 C29 DOUBLE NONE 41
R6W C34 C33 SINGLE NONE 42
R6W C40 C39 DOUBLE NONE 43
R6W C40 N41 SINGLE NONE 44
R6W C39 C43 SINGLE NONE 45
R6W C29 C30 SINGLE NONE 46
R6W C33 C32 DOUBLE NONE 47
R6W N41 C42 SINGLE NONE 48
R6W C43 C42 DOUBLE NONE 49
R6W C43 C44 SINGLE NONE 50
R6W C42 C45 SINGLE NONE 51
R6W C44 C47 DOUBLE NONE 52
R6W C30 C31 DOUBLE NONE 53
R6W C32 C31 SINGLE NONE 54
R6W C45 C46 DOUBLE NONE 55
R6W C47 C46 SINGLE NONE 56
R6W C31 O50 SINGLE NONE 57
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
R6W MurckoScaffold S1 scaffold 'O=C1N[C@H](c2c(CNCCCCCCNCc3[nH]c4ccccc4c3[C@H]3NC(=O)c4ccccc43)[nH]c3ccccc23)c2ccccc21' InChI=1S/C40H40N6O2/c47-39-27-15-5-3-13-25(27)37(45-39)35-29-17-7-9-19-31(29)43-33(35)23-41-21-11-1-2-12-22-42-24-34-36(30-18-8-10-20-32(30)44-34)38-26-14-4-6-16-28(26)40(48)46-38/h3-10,13-20,37-38,41-44H,1-2,11-12,21-24H2,(H,45,47)(H,46,48)/t37-,38-/m0/s1 SEHGDJINBGMVBE-UWXQCODUSA-N
R6W amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
R6W indole F2 fragment 'c1ccc2[nH]ccc2c1' InChI=1S/C8H7N/c1-2-4-8-7(3-1)5-6-9-8/h1-6,9H SIKJAQJRHWYJAI-UHFFFAOYSA-N
R6W phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
R6W pyrrole F4 fragment 'c1cc[nH]c1' InChI=1S/C4H5N/c1-2-4-5-3-1/h1-5H KAESVJOAVNADME-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
R6W C4 S1 1
R6W C5 S1 1
R6W C6 S1 1
R6W C7 S1 1
R6W C15 S1 1
R6W C17 S1 1
R6W C20 S1 1
R6W C24 S1 1
R6W C26 S1 1
R6W C28 S1 1
R6W C1 S1 1
R6W C2 S1 1
R6W C3 S1 1
R6W N8 S1 1
R6W C9 S1 1
R6W O10 S1 1
R6W C11 S1 1
R6W C12 S1 1
R6W N13 S1 1
R6W C14 S1 1
R6W C16 S1 1
R6W C18 S1 1
R6W C19 S1 1
R6W N21 S1 1
R6W C23 S1 1
R6W C25 S1 1
R6W C27 S1 1
R6W C29 S1 1
R6W C30 S1 1
R6W C31 S1 1
R6W C32 S1 1
R6W C33 S1 1
R6W C34 S1 1
R6W C35 S1 1
R6W N36 S1 1
R6W C37 S1 1
R6W O38 S1 1
R6W C39 S1 1
R6W C40 S1 1
R6W N41 S1 1
R6W C42 S1 1
R6W C43 S1 1
R6W C44 S1 1
R6W C45 S1 1
R6W C46 S1 1
R6W C47 S1 1
R6W C48 S1 1
R6W N49 S1 1
R6W N8 F1 1
R6W C9 F1 1
R6W O10 F1 1
R6W C6 F1 1
R6W N36 F1 2
R6W C37 F1 2
R6W O38 F1 2
R6W C34 F1 2
R6W C14 F2 1
R6W C15 F2 1
R6W C11 F2 1
R6W C12 F2 1
R6W N13 F2 1
R6W C16 F2 1
R6W C19 F2 1
R6W C18 F2 1
R6W C17 F2 1
R6W C42 F2 2
R6W C43 F2 2
R6W C39 F2 2
R6W C40 F2 2
R6W N41 F2 2
R6W C44 F2 2
R6W C47 F2 2
R6W C46 F2 2
R6W C45 F2 2
R6W C4 F3 1
R6W C3 F3 1
R6W C2 F3 1
R6W C1 F3 1
R6W C6 F3 1
R6W C5 F3 1
R6W C15 F3 2
R6W C16 F3 2
R6W C19 F3 2
R6W C18 F3 2
R6W C17 F3 2
R6W C14 F3 2
R6W C29 F3 3
R6W C34 F3 3
R6W C33 F3 3
R6W C32 F3 3
R6W C31 F3 3
R6W C30 F3 3
R6W C42 F3 4
R6W C43 F3 4
R6W C44 F3 4
R6W C47 F3 4
R6W C46 F3 4
R6W C45 F3 4
R6W C12 F4 1
R6W C11 F4 1
R6W C15 F4 1
R6W C14 F4 1
R6W N13 F4 1
R6W C40 F4 2
R6W C39 F4 2
R6W C43 F4 2
R6W C42 F4 2
R6W N41 F4 2
#
_pdbe_chem_comp_rdkit_properties.comp_id R6W
_pdbe_chem_comp_rdkit_properties.exactmw 668.311
_pdbe_chem_comp_rdkit_properties.amw 668.798
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 10
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 8
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 15
_pdbe_chem_comp_rdkit_properties.NumHBD 8
_pdbe_chem_comp_rdkit_properties.NumHBA 6
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 50
_pdbe_chem_comp_rdkit_properties.NumAtoms 90
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 10
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.250
_pdbe_chem_comp_rdkit_properties.NumRings 8
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 6
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 4
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 2
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 345.583
_pdbe_chem_comp_rdkit_properties.tpsa 154.300
_pdbe_chem_comp_rdkit_properties.CrippenClogP 3.946
_pdbe_chem_comp_rdkit_properties.CrippenMR 185.551
_pdbe_chem_comp_rdkit_properties.chi0v 24.316
_pdbe_chem_comp_rdkit_properties.chi1v 13.750
_pdbe_chem_comp_rdkit_properties.chi2v 6.872
_pdbe_chem_comp_rdkit_properties.chi3v 6.872
_pdbe_chem_comp_rdkit_properties.chi4v 4.915
_pdbe_chem_comp_rdkit_properties.chi0n 64.316
_pdbe_chem_comp_rdkit_properties.chi1n 33.250
_pdbe_chem_comp_rdkit_properties.chi2n 6.872
_pdbe_chem_comp_rdkit_properties.chi3n 6.872
_pdbe_chem_comp_rdkit_properties.chi4n 4.915
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -5.580
_pdbe_chem_comp_rdkit_properties.kappa1 10.020
_pdbe_chem_comp_rdkit_properties.kappa2 13.379
_pdbe_chem_comp_rdkit_properties.kappa3 5.862
_pdbe_chem_comp_rdkit_properties.Phi 2.681
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
R6W UniChem PDBe R6W
R6W UniChem PubChem 154815691
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
R6W C4 7.701 0.798 1.410 ETKDGv3 1
R6W C5 6.449 1.011 0.660 ETKDGv3 2
R6W C6 5.689 2.069 0.903 ETKDGv3 3
R6W C7 5.878 0.169 -0.451 ETKDGv3 4
R6W C15 6.222 -2.417 -0.821 ETKDGv3 5
R6W C17 6.288 -4.850 -0.676 ETKDGv3 6
R6W C20 4.310 -1.063 2.085 ETKDGv3 7
R6W C24 1.904 -1.719 0.059 ETKDGv3 8
R6W C26 0.587 0.101 -1.210 ETKDGv3 9
R6W C28 -1.839 0.750 -0.686 ETKDGv3 10
R6W C1 6.037 3.051 1.942 ETKDGv3 11
R6W C2 7.170 2.864 2.640 ETKDGv3 12
R6W C3 8.045 1.688 2.364 ETKDGv3 13
R6W N8 4.608 0.826 -0.759 ETKDGv3 14
R6W C9 4.535 1.997 0.039 ETKDGv3 15
R6W O10 3.594 2.831 -0.011 ETKDGv3 16
R6W C11 5.678 -1.281 -0.072 ETKDGv3 17
R6W C12 5.009 -1.808 0.974 ETKDGv3 18
R6W N13 5.114 -3.235 0.966 ETKDGv3 19
R6W C14 5.880 -3.522 -0.189 ETKDGv3 20
R6W C16 7.033 -2.467 -2.054 ETKDGv3 21
R6W C18 7.026 -4.916 -1.798 ETKDGv3 22
R6W C19 7.415 -3.670 -2.518 ETKDGv3 23
R6W N21 2.949 -1.566 2.331 ETKDGv3 24
R6W O22 9.215 1.522 3.102 ETKDGv3 25
R6W C23 1.933 -1.007 1.424 ETKDGv3 26
R6W C25 0.648 -1.377 -0.760 ETKDGv3 27
R6W C27 -0.356 0.964 -0.351 ETKDGv3 28
R6W C29 -8.246 -1.639 1.493 ETKDGv3 29
R6W C30 -9.042 -2.058 0.310 ETKDGv3 30
R6W C31 -8.591 -1.816 -0.940 ETKDGv3 31
R6W C32 -7.286 -1.123 -1.145 ETKDGv3 32
R6W C33 -6.594 -0.745 -0.065 ETKDGv3 33
R6W C34 -7.085 -1.021 1.270 ETKDGv3 34
R6W C35 -5.257 -0.058 0.009 ETKDGv3 35
R6W N36 -5.033 0.110 1.450 ETKDGv3 36
R6W C37 -6.100 -0.491 2.178 ETKDGv3 37
R6W O38 -6.157 -0.534 3.435 ETKDGv3 38
R6W C39 -5.277 1.280 -0.692 ETKDGv3 39
R6W C40 -4.543 1.657 -1.754 ETKDGv3 40
R6W N41 -4.841 3.004 -2.123 ETKDGv3 41
R6W C42 -5.837 3.403 -1.199 ETKDGv3 42
R6W C43 -6.122 2.432 -0.353 ETKDGv3 43
R6W C44 -7.150 2.613 0.691 ETKDGv3 44
R6W C45 -6.520 4.706 -1.140 ETKDGv3 45
R6W C46 -7.456 4.891 -0.193 ETKDGv3 46
R6W C47 -7.786 3.796 0.763 ETKDGv3 47
R6W C48 -3.493 0.847 -2.473 ETKDGv3 48
R6W N49 -2.133 1.211 -2.050 ETKDGv3 49
R6W O50 -9.350 -2.217 -2.036 ETKDGv3 50
R6W H1 8.323 -0.061 1.196 ETKDGv3 51
R6W H2 6.548 0.254 -1.332 ETKDGv3 52
R6W H3 6.000 -5.748 -0.145 ETKDGv3 53
R6W H4 4.906 -1.208 3.009 ETKDGv3 54
R6W H5 4.282 0.026 1.910 ETKDGv3 55
R6W H6 2.804 -1.454 -0.532 ETKDGv3 56
R6W H7 1.918 -2.819 0.219 ETKDGv3 57
R6W H8 1.601 0.552 -1.181 ETKDGv3 58
R6W H9 0.265 0.147 -2.273 ETKDGv3 59
R6W H10 -2.447 1.324 0.047 ETKDGv3 60
R6W H11 -2.091 -0.326 -0.577 ETKDGv3 61
R6W H12 5.397 3.902 2.139 ETKDGv3 62
R6W H13 7.450 3.571 3.410 ETKDGv3 63
R6W H14 3.977 0.590 -1.556 ETKDGv3 64
R6W H15 4.769 -3.913 1.681 ETKDGv3 65
R6W H16 7.315 -1.564 -2.578 ETKDGv3 66
R6W H17 7.341 -5.878 -2.181 ETKDGv3 67
R6W H18 8.009 -3.737 -3.420 ETKDGv3 68
R6W H19 2.915 -2.612 2.339 ETKDGv3 69
R6W H21 9.837 0.737 2.946 ETKDGv3 70
R6W H22 2.090 0.085 1.285 ETKDGv3 71
R6W H23 0.943 -1.133 1.913 ETKDGv3 72
R6W H24 -0.258 -1.670 -0.188 ETKDGv3 73
R6W H25 0.662 -2.015 -1.671 ETKDGv3 74
R6W H26 -0.106 2.036 -0.511 ETKDGv3 75
R6W H27 -0.196 0.753 0.726 ETKDGv3 76
R6W H28 -8.597 -1.829 2.499 ETKDGv3 77
R6W H29 -9.989 -2.561 0.459 ETKDGv3 78
R6W H30 -6.908 -0.929 -2.140 ETKDGv3 79
R6W H31 -4.482 -0.738 -0.394 ETKDGv3 80
R6W H32 -4.179 0.531 1.880 ETKDGv3 81
R6W H33 -4.423 3.567 -2.897 ETKDGv3 82
R6W H34 -7.396 1.821 1.382 ETKDGv3 83
R6W H35 -6.274 5.494 -1.841 ETKDGv3 84
R6W H36 -7.976 5.838 -0.124 ETKDGv3 85
R6W H37 -8.545 3.956 1.518 ETKDGv3 86
R6W H38 -3.585 1.062 -3.559 ETKDGv3 87
R6W H39 -3.660 -0.245 -2.374 ETKDGv3 88
R6W H40 -2.030 2.253 -2.087 ETKDGv3 89
R6W H42 -9.033 -2.046 -2.983 ETKDGv3 90
#