data_R8B
#
_chem_comp.id R8B
_chem_comp.name "methyl 3-O-((7-carboxy) quinolin-2-yl)-methyl)-beta-D-galactopyranoside"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C18 H21 N O8"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms
"2-[[(2~{R},3~{S},4~{S},5~{R},6~{R})-2-(hydroxymethyl)-6-methoxy-3,5-bis(oxidanyl)oxan-4-yl]oxymethyl]quinoline-7-carboxylic acid"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2020-09-17
_chem_comp.pdbx_modified_date 2022-02-02
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 379.361
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code R8B
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7AEN
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
R8B O7 O1 O 0 1 N N N N N N 4.392 -0.363 7.314 7.142 -1.764 1.314 O7 R8B 1
R8B C17 C1 C 0 1 N N N N N N 5.607 -0.689 7.240 7.204 -0.809 0.565 C17 R8B 2
R8B O6 O2 O 0 1 N N N N N N 6.607 -0.016 7.697 8.402 -0.363 0.141 O6 R8B 3
R8B C15 C2 C 0 1 Y N N N N N 5.944 -2.004 6.638 5.965 -0.142 0.116 C15 R8B 4
R8B C14 C3 C 0 1 Y N N N N N 5.304 -2.656 5.546 6.043 0.960 -0.755 C14 R8B 5
R8B C13 C4 C 0 1 Y N N N N N 5.777 -3.914 5.108 4.917 1.589 -1.181 C13 R8B 6
R8B C11 C5 C 0 1 Y N N N N N 6.870 -4.422 5.841 3.656 1.141 -0.751 C11 R8B 7
R8B C10 C6 C 0 1 Y N N N N N 7.472 -5.614 5.581 2.474 1.776 -1.177 C10 R8B 8
R8B C9 C7 C 0 1 Y N N N N N 8.559 -5.995 6.378 1.281 1.291 -0.722 C9 R8B 9
R8B C16 C8 C 0 1 Y N N N N N 7.010 -2.503 7.354 4.736 -0.609 0.552 C16 R8B 10
R8B C12 C9 C 0 1 Y N N N N N 7.481 -3.729 7.035 3.561 0.032 0.126 C12 R8B 11
R8B N N1 N 0 1 Y N N N N N 8.653 -4.086 7.711 2.361 -0.393 0.535 N R8B 12
R8B C8 C10 C 0 1 Y N N N N N 9.109 -5.301 7.403 1.259 0.196 0.140 C8 R8B 13
R8B C7 C11 C 0 1 N N N N N N 10.279 -5.969 8.030 -0.068 -0.325 0.631 C7 R8B 14
R8B O3 O3 O 0 1 N N N N N N 10.899 -5.097 9.037 -1.123 0.463 0.077 O3 R8B 15
R8B C2 C12 C 0 1 N N S N N N 12.005 -5.792 9.627 -2.430 0.051 0.482 C2 R8B 16
R8B C1 C13 C 0 1 N N S N N N 13.329 -5.516 8.902 -3.368 1.262 0.495 C1 R8B 17
R8B O4 O4 O 0 1 N N N N N N 13.564 -4.080 8.818 -3.378 1.872 -0.797 O4 R8B 18
R8B C3 C14 C 0 1 N N R N N N 12.195 -5.409 11.089 -2.969 -0.988 -0.507 C3 R8B 19
R8B O2 O5 O 0 1 N N N N N N 11.014 -5.776 11.807 -2.142 -2.152 -0.474 O2 R8B 20
R8B C4 C15 C 0 1 N N R N N N 13.366 -6.235 11.642 -4.399 -1.365 -0.110 C4 R8B 21
R8B O1 O6 O 0 1 N N N N N N 13.478 -6.047 13.045 -4.928 -2.291 -1.060 O1 R8B 22
R8B C6 C16 C 0 1 N N N N N N 14.627 -5.383 13.506 -6.222 -2.796 -0.721 C6 R8B 23
R8B O O7 O 0 1 N N N N N N 14.556 -5.861 10.943 -5.211 -0.189 -0.087 O R8B 24
R8B C C17 C 0 1 N N R N N N 14.474 -6.296 9.579 -4.783 0.798 0.853 C R8B 25
R8B C5 C18 C 0 1 N N N N N N 15.835 -6.030 8.960 -5.738 1.993 0.809 C5 R8B 26
R8B O5 O8 O 0 1 N N N N N N 16.890 -6.673 9.671 -7.032 1.584 1.255 O5 R8B 27
R8B H1 H1 H 0 1 N N N N N N 6.292 0.780 8.108 9.184 -0.834 0.458 H1 R8B 28
R8B H2 H2 H 0 1 N N N N N N 4.462 -2.192 5.055 7.009 1.309 -1.089 H2 R8B 29
R8B H3 H3 H 0 1 N N N N N N 5.336 -4.445 4.277 4.991 2.434 -1.849 H3 R8B 30
R8B H4 H4 H 0 1 N N N N N N 7.121 -6.250 4.781 2.510 2.624 -1.845 H4 R8B 31
R8B H5 H5 H 0 1 N N N N N N 9.009 -6.950 6.150 0.356 1.755 -1.030 H5 R8B 32
R8B H6 H6 H 0 1 N N N N N N 7.458 -1.928 8.151 4.682 -1.458 1.217 H6 R8B 33
R8B H7 H7 H 0 1 N N N N N N 9.947 -6.899 8.514 -0.188 -1.363 0.321 H7 R8B 34
R8B H8 H8 H 0 1 N N N N N N 11.020 -6.205 7.252 -0.102 -0.264 1.719 H8 R8B 35
R8B H9 H9 H 0 1 N N N N N N 11.816 -6.875 9.582 -2.382 -0.386 1.479 H9 R8B 36
R8B H10 H10 H 0 1 N N N N N N 13.229 -5.908 7.879 -3.023 1.982 1.236 H10 R8B 37
R8B H11 H11 H 0 1 N N N N N N 12.824 -3.662 8.393 -3.957 2.644 -0.863 H11 R8B 38
R8B H12 H12 H 0 1 N N N N N N 12.411 -4.334 11.179 -2.969 -0.568 -1.513 H12 R8B 39
R8B H13 H13 H 0 1 N N N N N N 11.115 -5.544 12.723 -2.425 -2.853 -1.077 H13 R8B 40
R8B H14 H14 H 0 1 N N N N N N 13.151 -7.294 11.438 -4.393 -1.822 0.879 H14 R8B 41
R8B H15 H15 H 0 1 N N N N N N 14.590 -5.303 14.602 -6.170 -3.312 0.237 H15 R8B 42
R8B H16 H16 H 0 1 N N N N N N 15.522 -5.950 13.210 -6.928 -1.969 -0.651 H16 R8B 43
R8B H17 H17 H 0 1 N N N N N N 14.669 -4.375 13.067 -6.553 -3.492 -1.492 H17 R8B 44
R8B H18 H18 H 0 1 N N N N N N 14.254 -7.373 9.529 -4.782 0.370 1.855 H18 R8B 45
R8B H19 H19 H 0 1 N N N N N N 15.830 -6.400 7.924 -5.362 2.782 1.460 H19 R8B 46
R8B H20 H20 H 0 1 N N N N N N 16.018 -4.945 8.961 -5.807 2.366 -0.213 H20 R8B 47
R8B H21 H21 H 0 1 N N N N N N 17.720 -6.480 9.250 -7.690 2.293 1.254 H21 R8B 48
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
R8B C13 C14 DOUB Y N 1
R8B C13 C11 SING Y N 2
R8B C14 C15 SING Y N 3
R8B C10 C11 DOUB Y N 4
R8B C10 C9 SING Y N 5
R8B C11 C12 SING Y N 6
R8B C9 C8 DOUB Y N 7
R8B C15 C17 SING N N 8
R8B C15 C16 DOUB Y N 9
R8B C12 C16 SING Y N 10
R8B C12 N DOUB Y N 11
R8B C17 O7 DOUB N N 12
R8B C17 O6 SING N N 13
R8B C8 N SING Y N 14
R8B C8 C7 SING N N 15
R8B C7 O3 SING N N 16
R8B O4 C1 SING N N 17
R8B C1 C SING N N 18
R8B C1 C2 SING N N 19
R8B C5 C SING N N 20
R8B C5 O5 SING N N 21
R8B O3 C2 SING N N 22
R8B C O SING N N 23
R8B C2 C3 SING N N 24
R8B O C4 SING N N 25
R8B C3 C4 SING N N 26
R8B C3 O2 SING N N 27
R8B C4 O1 SING N N 28
R8B O1 C6 SING N N 29
R8B O6 H1 SING N N 30
R8B C14 H2 SING N N 31
R8B C13 H3 SING N N 32
R8B C10 H4 SING N N 33
R8B C9 H5 SING N N 34
R8B C16 H6 SING N N 35
R8B C7 H7 SING N N 36
R8B C7 H8 SING N N 37
R8B C2 H9 SING N N 38
R8B C1 H10 SING N N 39
R8B O4 H11 SING N N 40
R8B C3 H12 SING N N 41
R8B O2 H13 SING N N 42
R8B C4 H14 SING N N 43
R8B C6 H15 SING N N 44
R8B C6 H16 SING N N 45
R8B C6 H17 SING N N 46
R8B C H18 SING N N 47
R8B C5 H19 SING N N 48
R8B C5 H20 SING N N 49
R8B O5 H21 SING N N 50
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
R8B InChI InChI 1.03 InChI=1S/C18H21NO8/c1-25-18-15(22)16(14(21)13(7-20)27-18)26-8-11-5-4-9-2-3-10(17(23)24)6-12(9)19-11/h2-6,13-16,18,20-22H,7-8H2,1H3,(H,23,24)/t13-,14+,15-,16+,18-/m1/s1
R8B InChIKey InChI 1.03 OBYVIVUJQDGTKI-RIUYPTKQSA-N
R8B SMILES_CANONICAL CACTVS 3.385 CO[C@@H]1O[C@H](CO)[C@H](O)[C@H](OCc2ccc3ccc(cc3n2)C(O)=O)[C@H]1O
R8B SMILES CACTVS 3.385 CO[CH]1O[CH](CO)[CH](O)[CH](OCc2ccc3ccc(cc3n2)C(O)=O)[CH]1O
R8B SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 CO[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)OCc2ccc3ccc(cc3n2)C(=O)O)O
R8B SMILES "OpenEye OEToolkits" 2.0.7 COC1C(C(C(C(O1)CO)O)OCc2ccc3ccc(cc3n2)C(=O)O)O
#
_pdbx_chem_comp_identifier.comp_id R8B
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier
"2-[[(2~{R},3~{S},4~{S},5~{R},6~{R})-2-(hydroxymethyl)-6-methoxy-3,5-bis(oxidanyl)oxan-4-yl]oxymethyl]quinoline-7-carboxylic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
R8B 'Create component' 2020-09-17 PDBE
R8B 'Initial release' 2021-07-28 RCSB
R8B 'Modify name' 2022-02-02 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id R8B
_pdbx_chem_comp_synonyms.name
"2-[[(2~{R},3~{S},4~{S},5~{R},6~{R})-2-(hydroxymethyl)-6-methoxy-3,5-bis(oxidanyl)oxan-4-yl]oxymethyl]quinoline-7-carboxylic acid"
_pdbx_chem_comp_synonyms.provenance PDB
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_synonyms.comp_id R8B
_pdbe_chem_comp_synonyms.name
'2-[[(2~{R},3~{S},4~{S},5~{R},6~{R})-2-(hydroxymethyl)-6-methoxy-3,5-bis(oxidanyl)oxan-4-yl]oxymethyl]quinoline-7-carboxylic acid'
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
R8B O7 O 4.290 -7.546 1
R8B C17 C 4.296 -6.046 2
R8B O6 O 3.000 -5.291 3
R8B C15 C 5.598 -5.301 4
R8B C14 C 6.894 -6.056 5
R8B C13 C 8.196 -5.311 6
R8B C11 C 8.202 -3.811 7
R8B C10 C 9.570 -3.056 8
R8B C9 C 9.588 -1.494 9
R8B C16 C 5.604 -3.801 10
R8B C12 C 6.906 -3.056 11
R8B N N 6.888 -1.494 12
R8B C8 C 8.238 -0.707 13
R8B C7 C 8.238 0.793 14
R8B O3 O 9.537 1.543 15
R8B C2 C 9.537 3.043 16
R8B C1 C 8.238 3.793 17
R8B O4 O 6.939 3.043 18
R8B C3 C 10.836 3.793 19
R8B O2 O 12.135 3.043 20
R8B C4 C 10.836 5.293 21
R8B O1 O 12.135 6.043 22
R8B C6 C 12.135 7.543 23
R8B O O 9.537 6.043 24
R8B C C 8.238 5.293 25
R8B C5 C 6.939 6.043 26
R8B O5 O 6.939 7.543 27
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
R8B C13 C14 SINGLE NONE 1
R8B C13 C11 DOUBLE NONE 2
R8B C14 C15 DOUBLE NONE 3
R8B C10 C11 SINGLE NONE 4
R8B C10 C9 DOUBLE NONE 5
R8B C11 C12 SINGLE NONE 6
R8B C9 C8 SINGLE NONE 7
R8B C15 C17 SINGLE NONE 8
R8B C15 C16 SINGLE NONE 9
R8B C12 C16 DOUBLE NONE 10
R8B C12 N SINGLE NONE 11
R8B C17 O7 DOUBLE NONE 12
R8B C17 O6 SINGLE NONE 13
R8B C8 N DOUBLE NONE 14
R8B C8 C7 SINGLE NONE 15
R8B C7 O3 SINGLE NONE 16
R8B C1 O4 SINGLE BEGINWEDGE 17
R8B C1 C SINGLE NONE 18
R8B C1 C2 SINGLE NONE 19
R8B C C5 SINGLE BEGINWEDGE 20
R8B C5 O5 SINGLE NONE 21
R8B C2 O3 SINGLE BEGINWEDGE 22
R8B C O SINGLE NONE 23
R8B C2 C3 SINGLE NONE 24
R8B O C4 SINGLE NONE 25
R8B C3 C4 SINGLE NONE 26
R8B C3 O2 SINGLE BEGINDASH 27
R8B C4 O1 SINGLE BEGINWEDGE 28
R8B O1 C6 SINGLE NONE 29
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
R8B MurckoScaffold S1 scaffold c1ccc2nc(COC3CCOCC3)ccc2c1 InChI=1S/C15H17NO2/c1-2-4-15-12(3-1)5-6-13(16-15)11-18-14-7-9-17-10-8-14/h1-6,14H,7-11H2 BUWIWQOSSWGILP-UHFFFAOYSA-N
R8B phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
R8B pyranose F2 fragment OC1CCCCO1 InChI=1S/C5H10O2/c6-5-3-1-2-4-7-5/h5-6H,1-4H2 CELWCAITJAEQNL-UHFFFAOYSA-N
R8B pyridine F3 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N
R8B quinoline F4 fragment c1ccc2ncccc2c1 InChI=1S/C9H7N/c1-2-6-9-8(4-1)5-3-7-10-9/h1-7H SMWDFEZZVXVKRB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
R8B C15 S1 1
R8B C14 S1 1
R8B C13 S1 1
R8B C11 S1 1
R8B C10 S1 1
R8B C9 S1 1
R8B C16 S1 1
R8B C12 S1 1
R8B N S1 1
R8B C8 S1 1
R8B C7 S1 1
R8B O3 S1 1
R8B C2 S1 1
R8B C1 S1 1
R8B C3 S1 1
R8B C4 S1 1
R8B O S1 1
R8B C S1 1
R8B C15 F1 1
R8B C14 F1 1
R8B C13 F1 1
R8B C11 F1 1
R8B C12 F1 1
R8B C16 F1 1
R8B C1 F2 1
R8B C F2 1
R8B O F2 1
R8B C4 F2 1
R8B C3 F2 1
R8B C2 F2 1
R8B O1 F2 1
R8B C12 F3 1
R8B C11 F3 1
R8B C10 F3 1
R8B C9 F3 1
R8B C8 F3 1
R8B N F3 1
R8B C14 F4 1
R8B C13 F4 1
R8B C11 F4 1
R8B C12 F4 1
R8B C16 F4 1
R8B C15 F4 1
R8B N F4 1
R8B C8 F4 1
R8B C9 F4 1
R8B C10 F4 1
#
_pdbe_chem_comp_rdkit_properties.comp_id R8B
_pdbe_chem_comp_rdkit_properties.exactmw 379.127
_pdbe_chem_comp_rdkit_properties.amw 379.365
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 9
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 4
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 10
_pdbe_chem_comp_rdkit_properties.NumHBD 4
_pdbe_chem_comp_rdkit_properties.NumHBA 9
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 27
_pdbe_chem_comp_rdkit_properties.NumAtoms 48
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 9
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.444
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 5
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 184.142
_pdbe_chem_comp_rdkit_properties.tpsa 138.570
_pdbe_chem_comp_rdkit_properties.CrippenClogP -0.634
_pdbe_chem_comp_rdkit_properties.CrippenMR 89.311
_pdbe_chem_comp_rdkit_properties.chi0v 12.713
_pdbe_chem_comp_rdkit_properties.chi1v 6.693
_pdbe_chem_comp_rdkit_properties.chi2v 2.960
_pdbe_chem_comp_rdkit_properties.chi3v 2.960
_pdbe_chem_comp_rdkit_properties.chi4v 1.793
_pdbe_chem_comp_rdkit_properties.chi0n 33.713
_pdbe_chem_comp_rdkit_properties.chi1n 16.826
_pdbe_chem_comp_rdkit_properties.chi2n 2.960
_pdbe_chem_comp_rdkit_properties.chi3n 2.960
_pdbe_chem_comp_rdkit_properties.chi4n 1.793
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.140
_pdbe_chem_comp_rdkit_properties.kappa1 6.179
_pdbe_chem_comp_rdkit_properties.kappa2 8.257
_pdbe_chem_comp_rdkit_properties.kappa3 4.081
_pdbe_chem_comp_rdkit_properties.Phi 1.890
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
R8B UniChem ChEMBL CHEMBL4853061
R8B UniChem PDBe R8B
R8B UniChem PubChem 156022476
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loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
R8B O7 7.445 2.385 0.083 ETKDGv3 1
R8B C17 6.362 2.103 0.664 ETKDGv3 2
R8B O6 6.021 2.774 1.835 ETKDGv3 3
R8B C15 5.457 1.070 0.113 ETKDGv3 4
R8B C14 5.765 0.406 -1.020 ETKDGv3 5
R8B C13 4.851 -0.624 -1.560 ETKDGv3 6
R8B C11 3.707 -0.901 -0.920 ETKDGv3 7
R8B C10 2.756 -1.913 -1.408 ETKDGv3 8
R8B C9 1.628 -2.149 -0.728 ETKDGv3 9
R8B C16 4.184 0.753 0.815 ETKDGv3 10
R8B C12 3.360 -0.181 0.323 ETKDGv3 11
R8B N 2.128 -0.498 0.983 ETKDGv3 12
R8B C8 1.313 -1.406 0.522 ETKDGv3 13
R8B C7 0.026 -1.668 1.249 ETKDGv3 14
R8B O3 -0.810 -0.528 1.192 ETKDGv3 15
R8B C2 -1.596 -0.516 0.007 ETKDGv3 16
R8B C1 -2.951 -1.235 0.247 ETKDGv3 17
R8B O4 -3.294 -1.223 1.612 ETKDGv3 18
R8B C3 -1.796 0.950 -0.440 ETKDGv3 19
R8B O2 -1.830 1.019 -1.844 ETKDGv3 20
R8B C4 -3.106 1.539 0.148 ETKDGv3 21
R8B O1 -3.012 1.602 1.563 ETKDGv3 22
R8B C6 -2.604 2.884 1.988 ETKDGv3 23
R8B O -4.283 0.809 -0.191 ETKDGv3 24
R8B C -4.075 -0.548 -0.568 ETKDGv3 25
R8B C5 -5.410 -1.296 -0.428 ETKDGv3 26
R8B O5 -5.319 -2.587 -0.971 ETKDGv3 27
R8B H1 6.631 3.484 2.224 ETKDGv3 28
R8B H2 6.683 0.611 -1.557 ETKDGv3 29
R8B H3 5.115 -1.145 -2.472 ETKDGv3 30
R8B H4 2.962 -2.467 -2.316 ETKDGv3 31
R8B H5 0.934 -2.893 -1.099 ETKDGv3 32
R8B H6 3.917 1.275 1.725 ETKDGv3 33
R8B H7 0.265 -1.867 2.315 ETKDGv3 34
R8B H8 -0.478 -2.588 0.872 ETKDGv3 35
R8B H9 -1.074 -1.031 -0.836 ETKDGv3 36
R8B H10 -2.848 -2.288 -0.108 ETKDGv3 37
R8B H11 -2.865 -2.016 2.028 ETKDGv3 38
R8B H12 -0.927 1.551 -0.079 ETKDGv3 39
R8B H13 -1.672 1.967 -2.092 ETKDGv3 40
R8B H14 -3.241 2.551 -0.306 ETKDGv3 41
R8B H15 -3.390 3.639 1.770 ETKDGv3 42
R8B H16 -2.453 2.861 3.087 ETKDGv3 43
R8B H17 -1.639 3.182 1.522 ETKDGv3 44
R8B H18 -3.806 -0.579 -1.647 ETKDGv3 45
R8B H19 -5.736 -1.325 0.638 ETKDGv3 46
R8B H20 -6.190 -0.741 -0.992 ETKDGv3 47
R8B H21 -5.106 -3.202 -0.221 ETKDGv3 48
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