data_RA9
#
_chem_comp.id RA9
_chem_comp.name 2-[(5-azanyl-1,3,4-thiadiazol-2-yl)sulfanyl]-~{N}-(4-sulfamoylphenyl)ethanamide
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C10 H11 N5 O3 S3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2017-05-11
_chem_comp.pdbx_modified_date 2018-01-12
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 345.421
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code RA9
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5NXW
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
RA9 O2 O1 O 0 1 N N N N N N -7.509 2.637 16.708 -6.919 0.935 0.052 O2 RA9 1
RA9 S2 S1 S 0 1 N N N N N N -6.069 2.593 16.797 -6.183 -0.280 0.100 S2 RA9 2
RA9 O1 O2 O 0 1 N N N N N N -5.496 2.707 18.140 -6.340 -1.243 1.133 O1 RA9 3
RA9 N4 N1 N 0 1 N N N N N N -5.509 1.282 16.057 -6.489 -1.069 -1.324 N4 RA9 4
RA9 C2 C1 C 0 1 Y N N N N N -5.530 3.939 15.945 -4.480 0.169 0.092 C2 RA9 5
RA9 C1 C2 C 0 1 Y N N N N N -4.187 4.114 15.578 -4.090 1.389 -0.429 C1 RA9 6
RA9 C3 C3 C 0 1 Y N N N N N -6.417 4.961 15.526 -3.536 -0.697 0.613 C3 RA9 7
RA9 C4 C4 C 0 1 Y N N N N N -6.009 6.078 14.807 -2.200 -0.347 0.609 C4 RA9 8
RA9 C5 C5 C 0 1 Y N N N N N -4.677 6.234 14.440 -1.804 0.875 0.081 C5 RA9 9
RA9 C C6 C 0 1 Y N N N N N -3.765 5.258 14.850 -2.756 1.744 -0.437 C RA9 10
RA9 N N2 N 0 1 N N N N N N -4.241 7.350 13.752 -0.451 1.232 0.075 N RA9 11
RA9 C6 C7 C 0 1 N N N N N N -2.941 7.737 13.522 0.495 0.284 -0.077 C6 RA9 12
RA9 O O3 O 0 1 N N N N N N -1.884 7.186 13.806 0.173 -0.863 -0.305 O RA9 13
RA9 C7 C8 C 0 1 N N N N N N -2.674 9.069 12.872 1.952 0.650 0.036 C7 RA9 14
RA9 S S2 S 0 1 N N N N N N -1.444 9.884 13.854 2.969 -0.831 -0.216 S RA9 15
RA9 C8 C9 C 0 1 Y N N N N N -1.653 11.535 13.368 4.612 -0.217 -0.051 C8 RA9 16
RA9 N1 N3 N 0 1 Y N N N N N -2.395 11.869 12.293 4.932 1.014 0.199 N1 RA9 17
RA9 S1 S3 S 0 1 Y N N N N N -0.883 12.776 14.294 6.080 -1.179 -0.191 S1 RA9 18
RA9 C9 C10 C 0 1 Y N N N N N -1.635 13.821 13.130 7.061 0.251 0.111 C9 RA9 19
RA9 N2 N4 N 0 1 Y N N N N N -2.386 13.275 12.146 6.283 1.272 0.287 N2 RA9 20
RA9 N3 N5 N 0 1 N N N N N N -1.461 15.161 13.213 8.450 0.279 0.159 N3 RA9 21
RA9 H1 H1 H 0 1 N N N N N N -5.817 0.466 16.546 -7.148 -0.716 -1.942 H1 RA9 22
RA9 H2 H2 H 0 1 N N N N N N -5.852 1.257 15.118 -6.009 -1.883 -1.541 H2 RA9 23
RA9 H3 H3 H 0 1 N N N N N N -3.460 3.364 15.854 -4.831 2.065 -0.831 H3 RA9 24
RA9 H4 H4 H 0 1 N N N N N N -7.463 4.867 15.778 -3.843 -1.647 1.023 H4 RA9 25
RA9 H5 H5 H 0 1 N N N N N N -6.732 6.831 14.531 -1.463 -1.024 1.016 H5 RA9 26
RA9 H6 H6 H 0 1 N N N N N N -2.719 5.376 14.609 -2.452 2.695 -0.848 H6 RA9 27
RA9 H7 H7 H 0 1 N N N N N N -4.952 7.945 13.378 -0.195 2.161 0.181 H7 RA9 28
RA9 H8 H8 H 0 1 N N N N N N -2.303 8.922 11.847 2.200 1.394 -0.722 H8 RA9 29
RA9 H9 H9 H 0 1 N N N N N N -3.596 9.669 12.846 2.148 1.061 1.026 H9 RA9 30
RA9 H10 H10 H 0 1 N N N N N N -1.956 15.609 12.468 8.956 -0.536 0.019 H10 RA9 31
RA9 H11 H11 H 0 1 N N N N N N -1.812 15.489 14.090 8.912 1.114 0.331 H11 RA9 32
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
RA9 N2 N1 SING Y N 1
RA9 N2 C9 DOUB Y N 2
RA9 N1 C8 DOUB Y N 3
RA9 C7 C6 SING N N 4
RA9 C7 S SING N N 5
RA9 C9 N3 SING N N 6
RA9 C9 S1 SING Y N 7
RA9 C8 S SING N N 8
RA9 C8 S1 SING Y N 9
RA9 C6 N SING N N 10
RA9 C6 O DOUB N N 11
RA9 N C5 SING N N 12
RA9 C5 C4 DOUB Y N 13
RA9 C5 C SING Y N 14
RA9 C4 C3 SING Y N 15
RA9 C C1 DOUB Y N 16
RA9 C3 C2 DOUB Y N 17
RA9 C1 C2 SING Y N 18
RA9 C2 S2 SING N N 19
RA9 N4 S2 SING N N 20
RA9 O2 S2 DOUB N N 21
RA9 S2 O1 DOUB N N 22
RA9 N4 H1 SING N N 23
RA9 N4 H2 SING N N 24
RA9 C1 H3 SING N N 25
RA9 C3 H4 SING N N 26
RA9 C4 H5 SING N N 27
RA9 C H6 SING N N 28
RA9 N H7 SING N N 29
RA9 C7 H8 SING N N 30
RA9 C7 H9 SING N N 31
RA9 N3 H10 SING N N 32
RA9 N3 H11 SING N N 33
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
RA9 InChI InChI 1.03 InChI=1S/C10H11N5O3S3/c11-9-14-15-10(20-9)19-5-8(16)13-6-1-3-7(4-2-6)21(12,17)18/h1-4H,5H2,(H2,11,14)(H,13,16)(H2,12,17,18)
RA9 InChIKey InChI 1.03 XOOCPGSAGIALAP-UHFFFAOYSA-N
RA9 SMILES_CANONICAL CACTVS 3.385 Nc1sc(SCC(=O)Nc2ccc(cc2)[S](N)(=O)=O)nn1
RA9 SMILES CACTVS 3.385 Nc1sc(SCC(=O)Nc2ccc(cc2)[S](N)(=O)=O)nn1
RA9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 c1cc(ccc1NC(=O)CSc2nnc(s2)N)S(=O)(=O)N
RA9 SMILES "OpenEye OEToolkits" 2.0.6 c1cc(ccc1NC(=O)CSc2nnc(s2)N)S(=O)(=O)N
#
_pdbx_chem_comp_identifier.comp_id RA9
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.6
_pdbx_chem_comp_identifier.identifier 2-[(5-azanyl-1,3,4-thiadiazol-2-yl)sulfanyl]-~{N}-(4-sulfamoylphenyl)ethanamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
RA9 'Create component' 2017-05-11 EBI
RA9 'Initial release' 2018-01-17 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
RA9 O2 O 6.655 6.453 1
RA9 S2 S 8.155 6.453 2
RA9 O1 O 8.155 7.953 3
RA9 N4 N 9.655 6.453 4
RA9 C2 C 8.155 4.953 5
RA9 C1 C 9.454 4.203 6
RA9 C3 C 6.856 4.203 7
RA9 C4 C 6.856 2.703 8
RA9 C5 C 8.155 1.953 9
RA9 C C 9.454 2.703 10
RA9 N N 8.155 0.453 11
RA9 C6 C 6.856 -0.297 12
RA9 O O 5.557 0.453 13
RA9 C7 C 6.856 -1.797 14
RA9 S S 5.557 -2.547 15
RA9 C8 C 5.557 -4.047 16
RA9 N1 N 6.770 -4.928 17
RA9 S1 S 4.343 -4.928 18
RA9 C9 C 4.807 -6.355 19
RA9 N2 N 6.307 -6.355 20
RA9 N3 N 3.925 -7.569 21
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
RA9 N2 N1 SINGLE NONE 1
RA9 N2 C9 DOUBLE NONE 2
RA9 N1 C8 DOUBLE NONE 3
RA9 C7 C6 SINGLE NONE 4
RA9 C7 S SINGLE NONE 5
RA9 C9 N3 SINGLE NONE 6
RA9 C9 S1 SINGLE NONE 7
RA9 C8 S SINGLE NONE 8
RA9 C8 S1 SINGLE NONE 9
RA9 C6 N SINGLE NONE 10
RA9 C6 O DOUBLE NONE 11
RA9 N C5 SINGLE NONE 12
RA9 C5 C4 DOUBLE NONE 13
RA9 C5 C SINGLE NONE 14
RA9 C4 C3 SINGLE NONE 15
RA9 C C1 DOUBLE NONE 16
RA9 C3 C2 DOUBLE NONE 17
RA9 C1 C2 SINGLE NONE 18
RA9 C2 S2 SINGLE NONE 19
RA9 N4 S2 SINGLE NONE 20
RA9 O2 S2 DOUBLE NONE 21
RA9 S2 O1 DOUBLE NONE 22
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
RA9 MurckoScaffold S1 scaffold O=C(CSc1nncs1)Nc1ccccc1 InChI=1S/C10H9N3OS2/c14-9(6-15-10-13-11-7-16-10)12-8-4-2-1-3-5-8/h1-5,7H,6H2,(H,12,14) LOTMAQYNEIUKTG-UHFFFAOYSA-N
RA9 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
RA9 phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
RA9 thiadiazole F3 fragment c1nncs1 InChI=1S/C2H2N2S/c1-3-4-2-5-1/h1-2H MBIZXFATKUQOOA-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
RA9 C2 S1 1
RA9 C1 S1 1
RA9 C3 S1 1
RA9 C4 S1 1
RA9 C5 S1 1
RA9 C S1 1
RA9 N S1 1
RA9 C6 S1 1
RA9 O S1 1
RA9 C7 S1 1
RA9 S S1 1
RA9 C8 S1 1
RA9 N1 S1 1
RA9 S1 S1 1
RA9 C9 S1 1
RA9 N2 S1 1
RA9 N F1 1
RA9 C6 F1 1
RA9 O F1 1
RA9 C7 F1 1
RA9 C2 F2 1
RA9 C3 F2 1
RA9 C4 F2 1
RA9 C5 F2 1
RA9 C F2 1
RA9 C1 F2 1
RA9 C8 F3 1
RA9 N1 F3 1
RA9 N2 F3 1
RA9 C9 F3 1
RA9 S1 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id RA9
_pdbe_chem_comp_rdkit_properties.exactmw 345.002
_pdbe_chem_comp_rdkit_properties.amw 345.431
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 8
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 5
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 7
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 8
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 21
_pdbe_chem_comp_rdkit_properties.NumAtoms 32
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 11
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.100
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 144.287
_pdbe_chem_comp_rdkit_properties.tpsa 141.060
_pdbe_chem_comp_rdkit_properties.CrippenClogP -0.479
_pdbe_chem_comp_rdkit_properties.CrippenMR 80.982
_pdbe_chem_comp_rdkit_properties.chi0v 12.135
_pdbe_chem_comp_rdkit_properties.chi1v 7.882
_pdbe_chem_comp_rdkit_properties.chi2v 3.955
_pdbe_chem_comp_rdkit_properties.chi3v 3.955
_pdbe_chem_comp_rdkit_properties.chi4v 2.431
_pdbe_chem_comp_rdkit_properties.chi0n 20.686
_pdbe_chem_comp_rdkit_properties.chi1n 10.045
_pdbe_chem_comp_rdkit_properties.chi2n 1.682
_pdbe_chem_comp_rdkit_properties.chi3n 1.682
_pdbe_chem_comp_rdkit_properties.chi4n 0.935
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.690
_pdbe_chem_comp_rdkit_properties.kappa1 6.604
_pdbe_chem_comp_rdkit_properties.kappa2 6.386
_pdbe_chem_comp_rdkit_properties.kappa3 4.666
_pdbe_chem_comp_rdkit_properties.Phi 2.008
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
RA9 UniChem PDBe RA9
RA9 UniChem ZINC ZINC000002260391
RA9 UniChem eMolecules 1021796
RA9 UniChem PubChem 1888035
RA9 UniChem Mcule MCULE-6658631539
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
RA9 O2 -4.159 -2.756 1.222 ETKDGv3 1
RA9 S2 -4.603 -1.393 0.769 ETKDGv3 2
RA9 O1 -5.657 -1.558 -0.290 ETKDGv3 3
RA9 N4 -5.262 -0.529 2.113 ETKDGv3 4
RA9 C2 -3.233 -0.506 0.109 ETKDGv3 5
RA9 C1 -1.851 -0.887 0.481 ETKDGv3 6
RA9 C3 -3.433 0.528 -0.720 ETKDGv3 7
RA9 C4 -2.283 1.281 -1.263 ETKDGv3 8
RA9 C5 -1.027 0.957 -0.910 ETKDGv3 9
RA9 C -0.809 -0.202 -0.004 ETKDGv3 10
RA9 N 0.078 1.692 -1.462 ETKDGv3 11
RA9 C6 1.331 1.876 -0.787 ETKDGv3 12
RA9 O 1.428 1.673 0.453 ETKDGv3 13
RA9 C7 2.531 2.345 -1.551 ETKDGv3 14
RA9 S 3.011 1.120 -2.817 ETKDGv3 15
RA9 C8 3.564 -0.104 -1.634 ETKDGv3 16
RA9 N1 2.795 -1.041 -1.180 ETKDGv3 17
RA9 S1 5.215 -0.174 -0.960 ETKDGv3 18
RA9 C9 4.662 -1.593 -0.033 ETKDGv3 19
RA9 N2 3.424 -1.897 -0.258 ETKDGv3 20
RA9 N3 5.483 -2.331 0.867 ETKDGv3 21
RA9 H1 -4.485 -0.389 2.796 ETKDGv3 22
RA9 H2 -5.531 0.418 1.765 ETKDGv3 23
RA9 H3 -1.678 -1.729 1.139 ETKDGv3 24
RA9 H4 -4.436 0.826 -0.999 ETKDGv3 25
RA9 H5 -2.467 2.108 -1.937 ETKDGv3 26
RA9 H6 0.193 -0.520 0.252 ETKDGv3 27
RA9 H7 -0.047 2.156 -2.391 ETKDGv3 28
RA9 H8 3.385 2.533 -0.866 ETKDGv3 29
RA9 H9 2.284 3.301 -2.058 ETKDGv3 30
RA9 H10 5.099 -3.154 1.381 ETKDGv3 31
RA9 H11 6.477 -2.050 1.019 ETKDGv3 32
#