data_RAB
#
_chem_comp.id RAB
_chem_comp.name 2-(6-AMINO-PURIN-9-YL)-5-HYDROXYMETHYL-TETRAHYDRO-FURAN-3,4-DIOL
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C10 H13 N5 O4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms 9-BETA-D-ARABINOFURANOSYL-ADENINE
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2003-07-09
_chem_comp.pdbx_modified_date 2021-03-01
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 267.241
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code RAB
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1PW7
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
RAB "O5'" "O5'" O 0 1 N N N N N N 93.513 65.943 17.286 -4.487 2.021 -0.980 "O5'" RAB 1
RAB "C5'" "C5'" C 0 1 N N N N N N 93.547 64.832 18.192 -4.245 1.029 0.019 "C5'" RAB 2
RAB "C4'" "C4'" C 0 1 N N R N N N 93.782 65.323 19.607 -3.145 0.080 -0.459 "C4'" RAB 3
RAB "O4'" "O4'" O 0 1 N N N N N N 93.703 66.742 19.805 -1.885 0.780 -0.558 "O4'" RAB 4
RAB "C1'" "C1'" C 0 1 N N R N N N 92.486 67.112 20.459 -0.874 -0.250 -0.523 "C1'" RAB 5
RAB N9 N9 N 0 1 Y N N N N N 91.103 67.437 19.630 0.418 0.317 -0.127 N9 RAB 6
RAB C4 C4 C 0 1 Y N N N N N 90.078 66.712 19.027 1.654 -0.222 -0.382 C4 RAB 7
RAB N3 N3 N 0 1 Y N N N N N 89.887 65.348 18.990 2.092 -1.314 -1.001 N3 RAB 8
RAB C2 C2 C 0 1 Y N N N N N 88.779 64.997 18.308 3.381 -1.565 -1.085 C2 RAB 9
RAB N1 N1 N 0 1 Y N N N N N 87.898 65.832 17.696 4.295 -0.763 -0.571 N1 RAB 10
RAB C6 C6 C 0 1 Y N N N N N 88.106 67.194 17.744 3.952 0.352 0.066 C6 RAB 11
RAB N6 N6 N 0 1 N N N N N N 87.246 68.017 17.144 4.917 1.187 0.602 N6 RAB 12
RAB C5 C5 C 0 1 Y N N N N N 89.261 67.681 18.450 2.587 0.661 0.187 C5 RAB 13
RAB N7 N7 N 0 1 Y N N N N N 89.760 68.970 18.691 1.886 1.679 0.742 N7 RAB 14
RAB C8 C8 C 0 1 Y N N N N N 90.838 68.744 19.389 0.613 1.477 0.562 C8 RAB 15
RAB "C2'" "C2'" C 0 1 N N S N N N 92.243 65.945 21.391 -1.368 -1.256 0.541 "C2'" RAB 16
RAB "O2'" "O2'" O 0 1 N N N N N N 90.883 65.701 21.712 -0.783 -0.969 1.813 "O2'" RAB 17
RAB "C3'" "C3'" C 0 1 N N S N N N 92.830 64.788 20.623 -2.898 -1.031 0.585 "C3'" RAB 18
RAB "O3'" "O3'" O 0 1 N N N N N N 93.613 64.068 21.568 -3.590 -2.226 0.218 "O3'" RAB 19
RAB "H5'" "H5'" H 0 1 N N N N N N 93.366 65.635 16.399 -5.185 2.597 -0.640 "H5'" RAB 20
RAB "H5'1" "1H5'" H 0 0 N N N N N N 94.297 64.066 17.886 -5.160 0.464 0.199 "H5'1" RAB 21
RAB "H5'2" "2H5'" H 0 0 N N N N N N 92.630 64.202 18.115 -3.930 1.513 0.944 "H5'2" RAB 22
RAB "H4'" "H4'" H 0 1 N N N N N N 94.822 64.947 19.747 -3.413 -0.356 -1.421 "H4'" RAB 23
RAB "H1'" "H1'" H 0 1 N N N N N N 92.670 68.128 20.880 -0.792 -0.736 -1.495 "H1'" RAB 24
RAB H2 H2 H 0 1 N N N N N N 88.572 63.916 18.244 3.704 -2.462 -1.594 H2 RAB 25
RAB HN61 1HN6 H 0 0 N N N N N N 86.310 67.820 17.497 5.856 0.961 0.515 HN61 RAB 26
RAB HN62 2HN6 H 0 0 N N N N N N 87.400 69.025 17.180 4.654 2.000 1.061 HN62 RAB 27
RAB H8 H8 H 0 1 N N N N N N 91.466 69.579 19.742 -0.174 2.132 0.907 H8 RAB 28
RAB "H2'" "H2'" H 0 1 N N N N N N 92.698 66.132 22.392 -1.140 -2.278 0.239 "H2'" RAB 29
RAB H1 H1 H 0 1 N N N N N N 90.730 64.968 22.297 -1.175 -1.585 2.446 H1 RAB 30
RAB "H3'" "H3'" H 0 1 N N N N N N 92.038 64.174 20.135 -3.208 -0.700 1.576 "H3'" RAB 31
RAB H3 H3 H 0 1 N N N N N N 93.007 63.727 22.215 -4.533 -2.009 0.204 H3 RAB 32
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
RAB "O5'" "C5'" SING N N 1
RAB "O5'" "H5'" SING N N 2
RAB "C5'" "C4'" SING N N 3
RAB "C5'" "H5'1" SING N N 4
RAB "C5'" "H5'2" SING N N 5
RAB "C4'" "O4'" SING N N 6
RAB "C4'" "C3'" SING N N 7
RAB "C4'" "H4'" SING N N 8
RAB "O4'" "C1'" SING N N 9
RAB "C1'" N9 SING N N 10
RAB "C1'" "C2'" SING N N 11
RAB "C1'" "H1'" SING N N 12
RAB N9 C4 SING Y N 13
RAB N9 C8 SING Y N 14
RAB C4 N3 DOUB Y N 15
RAB C4 C5 SING Y N 16
RAB N3 C2 SING Y N 17
RAB C2 N1 DOUB Y N 18
RAB C2 H2 SING N N 19
RAB N1 C6 SING Y N 20
RAB C6 N6 SING N N 21
RAB C6 C5 DOUB Y N 22
RAB N6 HN61 SING N N 23
RAB N6 HN62 SING N N 24
RAB C5 N7 SING Y N 25
RAB N7 C8 DOUB Y N 26
RAB C8 H8 SING N N 27
RAB "C2'" "O2'" SING N N 28
RAB "C2'" "C3'" SING N N 29
RAB "C2'" "H2'" SING N N 30
RAB "O2'" H1 SING N N 31
RAB "C3'" "O3'" SING N N 32
RAB "C3'" "H3'" SING N N 33
RAB "O3'" H3 SING N N 34
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
RAB SMILES ACDLabs 10.04 n2c1c(ncnc1n(c2)C3OC(C(O)C3O)CO)N
RAB SMILES_CANONICAL CACTVS 3.341 Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO)[C@@H](O)[C@@H]3O
RAB SMILES CACTVS 3.341 Nc1ncnc2n(cnc12)[CH]3O[CH](CO)[CH](O)[CH]3O
RAB SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 c1nc(c2c(n1)n(cn2)[C@H]3[C@H]([C@@H]([C@H](O3)CO)O)O)N
RAB SMILES "OpenEye OEToolkits" 1.5.0 c1nc(c2c(n1)n(cn2)C3C(C(C(O3)CO)O)O)N
RAB InChI InChI 1.03 InChI=1S/C10H13N5O4/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(18)6(17)4(1-16)19-10/h2-4,6-7,10,16-18H,1H2,(H2,11,12,13)/t4-,6-,7+,10-/m1/s1
RAB InChIKey InChI 1.03 OIRDTQYFTABQOQ-UHTZMRCNSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
RAB "SYSTEMATIC NAME" ACDLabs 10.04 9-beta-D-arabinofuranosyl-9H-purin-6-amine
RAB "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (2R,3S,4S,5R)-2-(6-aminopurin-9-yl)-5-(hydroxymethyl)oxolane-3,4-diol
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
RAB 'Create component' 2003-07-09 RCSB
RAB 'Modify descriptor' 2011-06-04 RCSB
RAB 'Modify synonyms' 2021-03-01 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id RAB
_pdbx_chem_comp_synonyms.name 9-BETA-D-ARABINOFURANOSYL-ADENINE
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_drugbank_details.comp_id RAB
_pdbe_chem_comp_drugbank_details.drugbank_id DB00194
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name Vidarabine
_pdbe_chem_comp_drugbank_details.description
'A nucleoside antibiotic isolated from Streptomyces antibioticus. It has some antineoplastic properties and has broad spectrum activity against DNA viruses in cell cultures and significant antiviral activity against infections caused by a variety of viruses such as the herpes viruses, the vaccinia VIRUS and varicella zoster virus.'
_pdbe_chem_comp_drugbank_details.cas_number 24356-66-9
_pdbe_chem_comp_drugbank_details.mechanism_of_action
'Vidarabine stops replication of herpes viral DNA in 2 ways: 1) competitive inhibition of viral DNA polymerase, and consequently 2) incorporation into and termination of the growing viral DNA chain. Vidarabine is sequentially phosphorylated by kinases to the triphosphate ara-ATP, which is the active form of vidarabine that acts as both an inhibitor and a substrate of viral DNA polymerase. By acting as a substrate for viral DNA polymerase, ara-ATP competitively inhibits dATP leading to the formation of ‘faulty’ DNA. Ara-ATP can also be incorporated into the DNA strand to replace many of the adenosine bases, resulting in the disruption of DNA synthesis.'
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
RAB CI-673 ChEMBL 'Research Code'
RAB Vira-A ChEMBL Tradename
RAB 9-BETA-D-ARABINOFURANOSYL-ADENINE wwPDB ?
RAB 9-beta-D-arabinofuranosyl-9H-purin-6-amine DrugBank ?
RAB 9-beta-D-arabinofuranosyl-adenine DrugBank ?
RAB 9-beta-D-Arabinofuranosyladenine DrugBank ?
RAB '9-β-D-arabinofuranosyl-9H-purin-6-amine' DrugBank ?
RAB '9-β-D-arabinofuranosyladenine' DrugBank ?
RAB Spongoadenosine DrugBank ?
RAB Vidarabine DrugBank ?
RAB Vidarabinum DrugBank ?
RAB Arasena-A DrugBank 'International brand'
#
_pdbe_chem_comp_drugbank_classification.comp_id RAB
_pdbe_chem_comp_drugbank_classification.drugbank_id DB00194
_pdbe_chem_comp_drugbank_classification.parent 'Purine nucleosides'
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Purine nucleosides'
_pdbe_chem_comp_drugbank_classification.superclass 'Nucleosides, nucleotides, and analogues'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as purine nucleosides. These are compounds comprising a purine base attached to a ribosyl or deoxyribosyl moiety.'
#
loop_
_pdbe_chem_comp_drugbank_targets.comp_id
_pdbe_chem_comp_drugbank_targets.drugbank_id
_pdbe_chem_comp_drugbank_targets.name
_pdbe_chem_comp_drugbank_targets.organism
_pdbe_chem_comp_drugbank_targets.uniprot_id
_pdbe_chem_comp_drugbank_targets.pharmacologically_active
_pdbe_chem_comp_drugbank_targets.ordinal
RAB DB00194 'DNA polymerase catalytic subunit' HHV-1 P04293 yes 1
RAB DB00194 'Thymidine kinase' HHV-3 P09250 yes 2
RAB DB00194 'Thymidine kinase' HHV-1 Q9QNF7 yes 3
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
RAB "O5'" O 8.032 5.090 1
RAB "C5'" C 7.027 3.977 2
RAB "C4'" C 7.487 2.550 3
RAB "O4'" O 6.604 1.338 4
RAB "C1'" C 7.483 0.123 5
RAB N9 N 7.018 -1.303 6
RAB C4 C 5.598 -1.760 7
RAB N3 N 4.299 -1.010 8
RAB C2 C 3.000 -1.760 9
RAB N1 N 3.000 -3.260 10
RAB C6 C 4.299 -4.010 11
RAB N6 N 4.299 -5.510 12
RAB C5 C 5.598 -3.260 13
RAB N7 N 7.018 -3.717 14
RAB C8 C 7.893 -2.510 15
RAB "C2'" C 8.911 0.584 16
RAB "O2'" O 10.123 -0.300 17
RAB "C3'" C 8.913 2.084 18
RAB "O3'" O 10.129 2.963 19
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
RAB "O5'" "C5'" SINGLE NONE 1
RAB "C4'" "C5'" SINGLE BEGINDASH 2
RAB "C4'" "O4'" SINGLE NONE 3
RAB "C4'" "C3'" SINGLE NONE 4
RAB "O4'" "C1'" SINGLE NONE 5
RAB "C1'" N9 SINGLE BEGINDASH 6
RAB "C1'" "C2'" SINGLE NONE 7
RAB N9 C4 SINGLE NONE 8
RAB N9 C8 SINGLE NONE 9
RAB C4 N3 DOUBLE NONE 10
RAB C4 C5 SINGLE NONE 11
RAB N3 C2 SINGLE NONE 12
RAB C2 N1 DOUBLE NONE 13
RAB N1 C6 SINGLE NONE 14
RAB C6 N6 SINGLE NONE 15
RAB C6 C5 DOUBLE NONE 16
RAB C5 N7 SINGLE NONE 17
RAB N7 C8 DOUBLE NONE 18
RAB "C2'" "O2'" SINGLE BEGINDASH 19
RAB "C2'" "C3'" SINGLE NONE 20
RAB "C3'" "O3'" SINGLE BEGINWEDGE 21
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
RAB MurckoScaffold S1 scaffold 'c1ncc2ncn([C@H]3CCCO3)c2n1' InChI=1S/C9H10N4O/c1-2-8(14-3-1)13-6-12-7-4-10-5-11-9(7)13/h4-6,8H,1-3H2/t8-/m1/s1 DAKONNSVCLKUJN-MRVPVSSYSA-N
RAB adenine F1 fragment 'Nc1ncnc2nc[nH]c12' InChI=1S/C5H5N5/c6-4-3-5(9-1-7-3)10-2-8-4/h1-2H,(H3,6,7,8,9,10) GFFGJBXGBJISGV-UHFFFAOYSA-N
RAB imidazole F2 fragment 'c1c[nH]cn1' InChI=1S/C3H4N2/c1-2-5-3-4-1/h1-3H,(H,4,5) RAXXELZNTBOGNW-UHFFFAOYSA-N
RAB purine F3 fragment 'c1ncc2[nH]cnc2n1' InChI=1S/C5H4N4/c1-4-5(8-2-6-1)9-3-7-4/h1-3H,(H,6,7,8,9) KDCGOANMDULRCW-UHFFFAOYSA-N
RAB pyrimidine F4 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
RAB ribose F5 fragment OCC1OCC(O)C1O InChI=1S/C5H10O4/c6-1-4-5(8)3(7)2-9-4/h3-8H,1-2H2 KZVAAIRBJJYZOW-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
RAB "C4'" S1 1
RAB "O4'" S1 1
RAB "C1'" S1 1
RAB N9 S1 1
RAB C4 S1 1
RAB N3 S1 1
RAB C2 S1 1
RAB N1 S1 1
RAB C6 S1 1
RAB C5 S1 1
RAB N7 S1 1
RAB C8 S1 1
RAB "C2'" S1 1
RAB "C3'" S1 1
RAB N1 F1 1
RAB C6 F1 1
RAB C5 F1 1
RAB C4 F1 1
RAB N3 F1 1
RAB C2 F1 1
RAB N9 F1 1
RAB C8 F1 1
RAB N7 F1 1
RAB N6 F1 1
RAB C4 F2 1
RAB C5 F2 1
RAB N7 F2 1
RAB C8 F2 1
RAB N9 F2 1
RAB N7 F3 1
RAB C8 F3 1
RAB N9 F3 1
RAB C4 F3 1
RAB C5 F3 1
RAB C6 F3 1
RAB N1 F3 1
RAB C2 F3 1
RAB N3 F3 1
RAB C5 F4 1
RAB C4 F4 1
RAB N3 F4 1
RAB C2 F4 1
RAB N1 F4 1
RAB C6 F4 1
RAB "C2'" F5 1
RAB "C3'" F5 1
RAB "C4'" F5 1
RAB "O4'" F5 1
RAB "C1'" F5 1
RAB "C5'" F5 1
RAB "O5'" F5 1
RAB "O3'" F5 1
RAB "O2'" F5 1
#
_pdbe_chem_comp_rdkit_properties.comp_id RAB
_pdbe_chem_comp_rdkit_properties.exactmw 267.097
_pdbe_chem_comp_rdkit_properties.amw 267.245
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 9
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 5
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 6
_pdbe_chem_comp_rdkit_properties.NumHBD 4
_pdbe_chem_comp_rdkit_properties.NumHBA 9
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 19
_pdbe_chem_comp_rdkit_properties.NumAtoms 32
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 9
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.500
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 4
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 125.487
_pdbe_chem_comp_rdkit_properties.tpsa 139.540
_pdbe_chem_comp_rdkit_properties.CrippenClogP -2.789
_pdbe_chem_comp_rdkit_properties.CrippenMR 59.715
_pdbe_chem_comp_rdkit_properties.chi0v 8.869
_pdbe_chem_comp_rdkit_properties.chi1v 4.757
_pdbe_chem_comp_rdkit_properties.chi2v 2.310
_pdbe_chem_comp_rdkit_properties.chi3v 2.310
_pdbe_chem_comp_rdkit_properties.chi4v 1.474
_pdbe_chem_comp_rdkit_properties.chi0n 21.869
_pdbe_chem_comp_rdkit_properties.chi1n 10.876
_pdbe_chem_comp_rdkit_properties.chi2n 2.310
_pdbe_chem_comp_rdkit_properties.chi3n 2.310
_pdbe_chem_comp_rdkit_properties.chi4n 1.474
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.810
_pdbe_chem_comp_rdkit_properties.kappa1 4.348
_pdbe_chem_comp_rdkit_properties.kappa2 4.384
_pdbe_chem_comp_rdkit_properties.kappa3 1.748
_pdbe_chem_comp_rdkit_properties.Phi 1.003
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
RAB UniChem ChEMBL CHEMBL1090
RAB UniChem DrugBank DB00194
RAB UniChem PDBe RAB
RAB UniChem 'Guide to Pharmacology' 4806
RAB UniChem ChEBI 45327
RAB UniChem NIH SAM002564191
RAB UniChem ZINC ZINC000000970363
RAB UniChem fdasrs 3XQD2MEW34
RAB UniChem HMDB HMDB0014340
RAB UniChem Selleck Vidarabine(Vira-A)
RAB UniChem NMRShiftDB 60027683
RAB UniChem LINCS LSM-5800
RAB UniChem 'EPA CompTox Dashboard' DTXSID80873976
RAB UniChem DrugCentral 2818
RAB UniChem MetaboLights MTBLC45327
RAB UniChem BRENDA 12413
RAB UniChem BRENDA 138914
RAB UniChem BRENDA 158404
RAB UniChem BRENDA 165684
RAB UniChem BRENDA 254101
RAB UniChem BRENDA 257688
RAB UniChem BRENDA 31758
RAB UniChem BRENDA 32998
RAB UniChem BRENDA 33107
RAB UniChem BRENDA 43780
RAB UniChem BRENDA 43781
RAB UniChem BRENDA 48790
RAB UniChem BRENDA 63164
RAB UniChem BRENDA 69594
RAB UniChem BRENDA 92163
RAB UniChem BRENDA 96080
RAB UniChem ChemicalBook CB4697866
RAB UniChem ClinicalTrials ARA-A
RAB UniChem ClinicalTrials ARASENA-A
RAB UniChem ClinicalTrials CI-673
RAB UniChem ClinicalTrials VIDARABINE
RAB UniChem ClinicalTrials 'VIDARABINE MONOHYDRATE'
RAB UniChem ClinicalTrials VIRA-A
RAB UniChem rxnorm VIDARABINE
RAB UniChem rxnorm 'VIDARABINE ANHYDROUS'
RAB UniChem MedChemExpress HY-B0277
RAB UniChem 'Probes And Drugs' PD002089
RAB UniChem BindingDb 50144936
RAB UniChem eMolecules 474938
RAB UniChem eMolecules 534228
RAB UniChem SureChEMBL SCHEMBL110914
RAB UniChem 'PubChem TPHARMA' 14799159
RAB UniChem 'PubChem TPHARMA' 14848243
RAB UniChem PubChem 21704
RAB UniChem Mcule MCULE-4219451083
RAB UniChem Nikkaji J3.415K
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loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
RAB "O5'" -3.048 1.855 1.590 ETKDGv3 1
RAB "C5'" -2.719 0.493 1.636 ETKDGv3 2
RAB "C4'" -2.638 -0.087 0.217 ETKDGv3 3
RAB "O4'" -1.620 0.577 -0.503 ETKDGv3 4
RAB "C1'" -0.905 -0.404 -1.212 ETKDGv3 5
RAB N9 0.482 0.017 -1.413 ETKDGv3 6
RAB C4 1.304 0.774 -0.545 ETKDGv3 7
RAB N3 0.959 1.444 0.512 ETKDGv3 8
RAB C2 2.016 2.062 1.284 ETKDGv3 9
RAB N1 3.273 1.905 0.937 ETKDGv3 10
RAB C6 3.641 1.116 -0.219 ETKDGv3 11
RAB N6 5.013 0.905 -0.552 ETKDGv3 12
RAB C5 2.652 0.585 -0.935 ETKDGv3 13
RAB N7 2.694 -0.309 -2.040 ETKDGv3 14
RAB C8 1.445 -0.616 -2.281 ETKDGv3 15
RAB "C2'" -1.004 -1.718 -0.443 ETKDGv3 16
RAB "O2'" 0.036 -1.873 0.496 ETKDGv3 17
RAB "C3'" -2.351 -1.601 0.239 ETKDGv3 18
RAB "O3'" -3.320 -2.294 -0.505 ETKDGv3 19
RAB "H5'" -2.206 2.346 1.402 ETKDGv3 20
RAB "H5'1" -1.755 0.342 2.175 ETKDGv3 21
RAB "H5'2" -3.513 -0.038 2.204 ETKDGv3 22
RAB "H4'" -3.610 0.110 -0.290 ETKDGv3 23
RAB "H1'" -1.382 -0.531 -2.210 ETKDGv3 24
RAB H2 1.769 2.651 2.156 ETKDGv3 25
RAB HN61 5.287 0.333 -1.381 ETKDGv3 26
RAB HN62 5.763 1.329 0.038 ETKDGv3 27
RAB H8 1.164 -1.310 -3.062 ETKDGv3 28
RAB "H2'" -0.974 -2.580 -1.145 ETKDGv3 29
RAB H1 -0.020 -1.126 1.148 ETKDGv3 30
RAB "H3'" -2.302 -2.022 1.272 ETKDGv3 31
RAB H3 -4.133 -2.336 0.062 ETKDGv3 32
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