data_RC8
#
_chem_comp.id RC8
_chem_comp.name (2R)-2-({9-(1-methylethyl)-6-[(4-pyridin-2-ylbenzyl)amino]-9H-purin-2-yl}amino)butan-1-ol
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C24 H29 N7 O"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2008-06-10
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 431.533
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code RC8
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3DDP
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
RC8 C2 C2 C 0 1 Y N N N N N 5.583 25.157 23.660 3.351 0.789 -0.070 C2 RC8 1
RC8 C4 C4 C 0 1 Y N N N N N 7.823 24.543 23.997 3.466 -1.512 -0.006 C4 RC8 2
RC8 C5 C5 C 0 1 Y N N N N N 8.044 25.736 24.805 2.063 -1.570 -0.001 C5 RC8 3
RC8 C6 C6 C 0 1 Y N N N N N 6.875 26.628 24.979 1.345 -0.361 -0.028 C6 RC8 4
RC8 C8 C8 C 0 1 Y N N N N N 9.892 24.555 24.655 2.793 -3.612 0.045 C8 RC8 5
RC8 C9 C9 C 0 1 N N N N N N 9.077 22.633 23.180 5.294 -3.262 0.031 C9 RC8 6
RC8 C10 C10 C 0 1 N N N N N N 10.049 22.705 21.940 5.555 -4.135 -1.199 C10 RC8 7
RC8 C12 C12 C 0 1 N N R N N N 4.323 23.791 22.140 3.246 3.254 -0.151 C12 RC8 8
RC8 C14 C14 C 0 1 N N N N N N 5.648 24.047 20.006 4.358 3.993 -2.263 C14 RC8 9
RC8 O1 O1 O 0 1 N N N N N N 2.226 23.703 23.350 4.064 3.978 2.004 O1 RC8 10
RC8 C15 C15 C 0 1 N N N N N N 3.047 22.992 22.405 2.876 3.670 1.274 C15 RC8 11
RC8 C13 C13 C 0 1 N N N N N N 4.348 24.358 20.713 4.093 4.351 -0.799 C13 RC8 12
RC8 N2 N2 N 0 1 N N N N N N 4.399 24.873 23.103 4.012 2.005 -0.112 N2 RC8 13
RC8 N1 N1 N 0 1 Y N N N N N 5.710 26.285 24.392 2.024 0.780 -0.067 N1 RC8 14
RC8 N9 N9 N 0 1 Y N N N N N 8.972 23.888 23.951 3.899 -2.813 0.024 N9 RC8 15
RC8 C11 C11 C 0 1 N N N N N N 9.259 21.305 24.023 5.561 -4.076 1.299 C11 RC8 16
RC8 N7 N7 N 0 1 Y N N N N N 9.333 25.684 25.180 1.717 -2.881 0.031 N7 RC8 17
RC8 N3 N3 N 0 1 Y N N N N N 6.606 24.303 23.464 4.065 -0.325 -0.041 N3 RC8 18
RC8 N6 N6 N 0 1 N N N N N N 6.938 27.762 25.694 -0.038 -0.360 -0.024 N6 RC8 19
RC8 "CA'" "CA'" C 0 1 N N N N N N 5.916 28.767 25.475 -0.770 0.908 -0.052 "CA'" RC8 20
RC8 "C1'" "C1'" C 0 1 Y N N N N N 4.954 28.717 26.632 -2.252 0.634 -0.042 "C1'" RC8 21
RC8 "C6'" "C6'" C 0 1 Y N N N N N 3.583 28.767 26.401 -2.931 0.475 -1.237 "C6'" RC8 22
RC8 "C5'" "C5'" C 0 1 Y N N N N N 2.715 28.722 27.487 -4.288 0.223 -1.233 "C5'" RC8 23
RC8 "C4'" "C4'" C 0 1 Y N N N N N 3.217 28.618 28.789 -4.974 0.130 -0.024 "C4'" RC8 24
RC8 "C3'" "C3'" C 0 1 Y N N N N N 4.591 28.567 29.006 -4.284 0.291 1.177 "C3'" RC8 25
RC8 "C2'" "C2'" C 0 1 Y N N N N N 5.458 28.617 27.929 -2.926 0.536 1.162 "C2'" RC8 26
RC8 C1B C1B C 0 1 Y N N N N N 2.295 28.561 29.964 -6.433 -0.140 -0.014 C1B RC8 27
RC8 N1B N1B N 0 1 Y N N N N N 2.793 28.752 31.207 -7.082 -0.292 -1.161 N1B RC8 28
RC8 C5B C5B C 0 1 Y N N N N N 2.004 28.716 32.291 -8.376 -0.533 -1.196 C5B RC8 29
RC8 C4B C4B C 0 1 Y N N N N N 0.639 28.470 32.154 -9.110 -0.637 -0.028 C4B RC8 30
RC8 C3B C3B C 0 1 Y N N N N N 0.094 28.267 30.886 -8.471 -0.485 1.194 C3B RC8 31
RC8 C2B C2B C 0 1 Y N N N N N 0.929 28.309 29.774 -7.109 -0.238 1.200 C2B RC8 32
RC8 H8 H8 H 0 1 N N N N N N 10.919 24.248 24.788 2.809 -4.691 0.070 H8 RC8 33
RC8 H9 H9 H 0 1 N N N N N N 8.061 22.545 22.767 5.955 -2.396 0.009 H9 RC8 34
RC8 H10 H10 H 0 1 N N N N N N 9.459 22.722 21.012 5.364 -3.555 -2.102 H10 RC8 35
RC8 H10A H10A H 0 0 N N N N N N 10.658 23.619 22.004 6.592 -4.469 -1.194 H10A RC8 36
RC8 H10B H10B H 0 0 N N N N N N 10.708 21.824 21.939 4.893 -5.001 -1.177 H10B RC8 37
RC8 H12 H12 H 0 1 N N N N N N 5.189 23.121 22.244 2.337 3.104 -0.734 H12 RC8 38
RC8 H14 H14 H 0 1 N N N N N N 5.468 23.971 18.923 3.410 3.905 -2.793 H14 RC8 39
RC8 H14A H14A H 0 0 N N N N N N 6.373 24.851 20.202 4.962 4.775 -2.724 H14A RC8 40
RC8 H14B H14B H 0 0 N N N N N N 6.048 23.093 20.378 4.893 3.044 -2.313 H14B RC8 41
RC8 HO1 HO1 H 0 1 N N N N N N 2.721 23.860 24.145 3.905 4.251 2.918 HO1 RC8 42
RC8 H15 H15 H 0 1 N N N N N N 2.494 22.861 21.463 2.232 4.549 1.240 H15 RC8 43
RC8 H15A H15A H 0 0 N N N N N N 3.309 22.006 22.815 2.349 2.852 1.766 H15A RC8 44
RC8 H13 H13 H 0 1 N N N N N N 3.521 23.911 20.142 3.558 5.300 -0.748 H13 RC8 45
RC8 H13A H13A H 0 0 N N N N N N 4.246 25.451 20.777 5.041 4.439 -0.269 H13A RC8 46
RC8 HN2 HN2 H 0 1 N N N N N N 3.784 24.630 23.853 4.982 2.031 -0.115 HN2 RC8 47
RC8 H11 H11 H 0 1 N N N N N N 9.301 20.441 23.343 4.900 -4.942 1.321 H11 RC8 48
RC8 H11A H11A H 0 0 N N N N N N 10.193 21.363 24.601 6.598 -4.410 1.304 H11A RC8 49
RC8 H11B H11B H 0 0 N N N N N N 8.409 21.188 24.711 5.375 -3.455 2.175 H11B RC8 50
RC8 HN6 HN6 H 0 1 N N N N N N 6.879 27.498 26.657 -0.524 -1.200 -0.003 HN6 RC8 51
RC8 "HA'" "HA'" H 0 1 N N N N N N 6.377 29.764 25.414 -0.504 1.500 0.823 "HA'" RC8 52
RC8 "HA'A" "HA'A" H 0 0 N N N N N N 5.386 28.571 24.531 -0.509 1.459 -0.956 "HA'A" RC8 53
RC8 "H6'" "H6'" H 0 1 N N N N N N 3.199 28.840 25.394 -2.399 0.548 -2.173 "H6'" RC8 54
RC8 "H5'" "H5'" H 0 1 N N N N N N 1.648 28.768 27.324 -4.818 0.099 -2.166 "H5'" RC8 55
RC8 "H3'" "H3'" H 0 1 N N N N N N 4.979 28.489 30.011 -4.811 0.220 2.117 "H3'" RC8 56
RC8 "H2'" "H2'" H 0 1 N N N N N N 6.525 28.579 28.092 -2.390 0.657 2.091 "H2'" RC8 57
RC8 H5B H5B H 0 1 N N N N N N 2.427 28.878 33.271 -8.871 -0.651 -2.148 H5B RC8 58
RC8 H4B H4B H 0 1 N N N N N N 0.005 28.437 33.027 -10.172 -0.835 -0.067 H4B RC8 59
RC8 H3B H3B H 0 1 N N N N N N -0.963 28.080 30.769 -9.023 -0.562 2.119 H3B RC8 60
RC8 H2B H2B H 0 1 N N N N N N 0.532 28.150 28.782 -6.579 -0.118 2.134 H2B RC8 61
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
RC8 N2 C2 SING N N 1
RC8 N3 C2 DOUB Y N 2
RC8 C2 N1 SING Y N 3
RC8 N3 C4 SING Y N 4
RC8 N9 C4 SING Y N 5
RC8 C4 C5 DOUB Y N 6
RC8 C5 C6 SING Y N 7
RC8 C5 N7 SING Y N 8
RC8 N1 C6 DOUB Y N 9
RC8 C6 N6 SING N N 10
RC8 N9 C8 SING Y N 11
RC8 C8 N7 DOUB Y N 12
RC8 C8 H8 SING N N 13
RC8 C10 C9 SING N N 14
RC8 C9 N9 SING N N 15
RC8 C9 C11 SING N N 16
RC8 C9 H9 SING N N 17
RC8 C10 H10 SING N N 18
RC8 C10 H10A SING N N 19
RC8 C10 H10B SING N N 20
RC8 C13 C12 SING N N 21
RC8 C12 C15 SING N N 22
RC8 C12 N2 SING N N 23
RC8 C12 H12 SING N N 24
RC8 C14 C13 SING N N 25
RC8 C14 H14 SING N N 26
RC8 C14 H14A SING N N 27
RC8 C14 H14B SING N N 28
RC8 C15 O1 SING N N 29
RC8 O1 HO1 SING N N 30
RC8 C15 H15 SING N N 31
RC8 C15 H15A SING N N 32
RC8 C13 H13 SING N N 33
RC8 C13 H13A SING N N 34
RC8 N2 HN2 SING N N 35
RC8 C11 H11 SING N N 36
RC8 C11 H11A SING N N 37
RC8 C11 H11B SING N N 38
RC8 "CA'" N6 SING N N 39
RC8 N6 HN6 SING N N 40
RC8 "CA'" "C1'" SING N N 41
RC8 "CA'" "HA'" SING N N 42
RC8 "CA'" "HA'A" SING N N 43
RC8 "C6'" "C1'" DOUB Y N 44
RC8 "C1'" "C2'" SING Y N 45
RC8 "C6'" "C5'" SING Y N 46
RC8 "C6'" "H6'" SING N N 47
RC8 "C5'" "C4'" DOUB Y N 48
RC8 "C5'" "H5'" SING N N 49
RC8 "C4'" "C3'" SING Y N 50
RC8 "C4'" C1B SING Y N 51
RC8 "C2'" "C3'" DOUB Y N 52
RC8 "C3'" "H3'" SING N N 53
RC8 "C2'" "H2'" SING N N 54
RC8 C2B C1B DOUB Y N 55
RC8 C1B N1B SING Y N 56
RC8 N1B C5B DOUB Y N 57
RC8 C4B C5B SING Y N 58
RC8 C5B H5B SING N N 59
RC8 C3B C4B DOUB Y N 60
RC8 C4B H4B SING N N 61
RC8 C2B C3B SING Y N 62
RC8 C3B H3B SING N N 63
RC8 C2B H2B SING N N 64
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
RC8 SMILES ACDLabs 10.04 n1c(c2ncn(c2nc1NC(CC)CO)C(C)C)NCc4ccc(c3ncccc3)cc4
RC8 SMILES_CANONICAL CACTVS 3.341 CC[C@H](CO)Nc1nc(NCc2ccc(cc2)c3ccccn3)c4ncn(C(C)C)c4n1
RC8 SMILES CACTVS 3.341 CC[CH](CO)Nc1nc(NCc2ccc(cc2)c3ccccn3)c4ncn(C(C)C)c4n1
RC8 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 CC[C@H](CO)Nc1nc(c2c(n1)n(cn2)C(C)C)NCc3ccc(cc3)c4ccccn4
RC8 SMILES "OpenEye OEToolkits" 1.5.0 CCC(CO)Nc1nc(c2c(n1)n(cn2)C(C)C)NCc3ccc(cc3)c4ccccn4
RC8 InChI InChI 1.03 InChI=1S/C24H29N7O/c1-4-19(14-32)28-24-29-22(21-23(30-24)31(15-27-21)16(2)3)26-13-17-8-10-18(11-9-17)20-7-5-6-12-25-20/h5-12,15-16,19,32H,4,13-14H2,1-3H3,(H2,26,28,29,30)/t19-/m1/s1
RC8 InChIKey InChI 1.03 HOCBJBNQIQQQGT-LJQANCHMSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
RC8 "SYSTEMATIC NAME" ACDLabs 10.04 (2R)-2-({9-(1-methylethyl)-6-[(4-pyridin-2-ylbenzyl)amino]-9H-purin-2-yl}amino)butan-1-ol
RC8 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (2R)-2-[[9-propan-2-yl-6-[(4-pyridin-2-ylphenyl)methylamino]purin-2-yl]amino]butan-1-ol
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
RC8 'Create component' 2008-06-10 RCSB
RC8 'Modify aromatic_flag' 2011-06-04 RCSB
RC8 'Modify descriptor' 2011-06-04 RCSB
#
_pdbe_chem_comp_drugbank_details.comp_id RC8
_pdbe_chem_comp_drugbank_details.drugbank_id DB08463
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name
'(2R)-2-({9-(1-methylethyl)-6-[(4-pyridin-2-ylbenzyl)amino]-9H-purin-2-yl}amino)butan-1-ol'
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number ?
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
_pdbe_chem_comp_drugbank_classification.comp_id RC8
_pdbe_chem_comp_drugbank_classification.drugbank_id DB08463
_pdbe_chem_comp_drugbank_classification.parent Phenylpyridines
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Pyridines and derivatives'
_pdbe_chem_comp_drugbank_classification.superclass 'Organoheterocyclic compounds'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as phenylpyridines. These are polycyclic aromatic compounds containing a benzene ring linked to a pyridine ring through a CC or CN bond.'
#
loop_
_pdbe_chem_comp_drugbank_targets.comp_id
_pdbe_chem_comp_drugbank_targets.drugbank_id
_pdbe_chem_comp_drugbank_targets.name
_pdbe_chem_comp_drugbank_targets.organism
_pdbe_chem_comp_drugbank_targets.uniprot_id
_pdbe_chem_comp_drugbank_targets.pharmacologically_active
_pdbe_chem_comp_drugbank_targets.ordinal
RC8 DB08463 'Cyclin-dependent kinase 2' Humans P24941 unknown 1
RC8 DB08463 Cyclin-A2 Humans P20248 unknown 2
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
RC8 C2 C 9.002 5.250 1
RC8 C4 C 11.600 5.250 2
RC8 C5 C 11.600 3.750 3
RC8 C6 C 10.301 3.000 4
RC8 C8 C 13.894 4.500 5
RC8 C9 C 13.485 7.133 6
RC8 C10 C 14.953 7.443 7
RC8 C12 C 6.404 5.250 8
RC8 C14 C 3.805 5.250 9
RC8 O1 O 5.104 3.000 10
RC8 C15 C 6.404 3.750 11
RC8 C13 C 5.104 6.000 12
RC8 N2 N 7.702 6.000 13
RC8 N1 N 9.002 3.750 14
RC8 N9 N 13.019 5.707 15
RC8 C11 C 12.483 8.250 16
RC8 N7 N 13.019 3.293 17
RC8 N3 N 10.301 6.000 18
RC8 N6 N 10.301 1.500 19
RC8 "CA'" C 9.002 0.750 20
RC8 "C1'" C 9.002 -0.750 21
RC8 "C6'" C 7.702 -1.500 22
RC8 "C5'" C 7.702 -3.000 23
RC8 "C4'" C 9.002 -3.750 24
RC8 "C3'" C 10.301 -3.000 25
RC8 "C2'" C 10.301 -1.500 26
RC8 C1B C 9.002 -5.250 27
RC8 N1B N 7.702 -6.000 28
RC8 C5B C 7.702 -7.500 29
RC8 C4B C 9.002 -8.250 30
RC8 C3B C 10.301 -7.500 31
RC8 C2B C 10.301 -6.000 32
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
RC8 N2 C2 SINGLE NONE 1
RC8 N3 C2 DOUBLE NONE 2
RC8 C2 N1 SINGLE NONE 3
RC8 N3 C4 SINGLE NONE 4
RC8 N9 C4 SINGLE NONE 5
RC8 C4 C5 DOUBLE NONE 6
RC8 C5 C6 SINGLE NONE 7
RC8 C5 N7 SINGLE NONE 8
RC8 N1 C6 DOUBLE NONE 9
RC8 C6 N6 SINGLE NONE 10
RC8 N9 C8 SINGLE NONE 11
RC8 C8 N7 DOUBLE NONE 12
RC8 C10 C9 SINGLE NONE 13
RC8 C9 N9 SINGLE NONE 14
RC8 C9 C11 SINGLE NONE 15
RC8 C12 C13 SINGLE BEGINWEDGE 16
RC8 C12 C15 SINGLE NONE 17
RC8 C12 N2 SINGLE NONE 18
RC8 C14 C13 SINGLE NONE 19
RC8 C15 O1 SINGLE NONE 20
RC8 "CA'" N6 SINGLE NONE 21
RC8 "CA'" "C1'" SINGLE NONE 22
RC8 "C6'" "C1'" DOUBLE NONE 23
RC8 "C1'" "C2'" SINGLE NONE 24
RC8 "C6'" "C5'" SINGLE NONE 25
RC8 "C5'" "C4'" DOUBLE NONE 26
RC8 "C4'" "C3'" SINGLE NONE 27
RC8 "C4'" C1B SINGLE NONE 28
RC8 "C2'" "C3'" DOUBLE NONE 29
RC8 C2B C1B SINGLE NONE 30
RC8 C1B N1B DOUBLE NONE 31
RC8 N1B C5B SINGLE NONE 32
RC8 C4B C5B DOUBLE NONE 33
RC8 C3B C4B SINGLE NONE 34
RC8 C2B C3B DOUBLE NONE 35
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
RC8 MurckoScaffold S1 scaffold 'c1ccc(-c2ccc(CNc3ncnc4[nH]cnc34)cc2)nc1' InChI=1S/C17H14N6/c1-2-8-18-14(3-1)13-6-4-12(5-7-13)9-19-16-15-17(21-10-20-15)23-11-22-16/h1-8,10-11H,9H2,(H2,19,20,21,22,23) IBXOQLHVGZMWMZ-UHFFFAOYSA-N
RC8 adenine F1 fragment 'Nc1ncnc2nc[nH]c12' InChI=1S/C5H5N5/c6-4-3-5(9-1-7-3)10-2-8-4/h1-2H,(H3,6,7,8,9,10) GFFGJBXGBJISGV-UHFFFAOYSA-N
RC8 imidazole F2 fragment 'c1c[nH]cn1' InChI=1S/C3H4N2/c1-2-5-3-4-1/h1-3H,(H,4,5) RAXXELZNTBOGNW-UHFFFAOYSA-N
RC8 phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
RC8 purine F4 fragment 'c1ncc2[nH]cnc2n1' InChI=1S/C5H4N4/c1-4-5(8-2-6-1)9-3-7-4/h1-3H,(H,6,7,8,9) KDCGOANMDULRCW-UHFFFAOYSA-N
RC8 pyridine F5 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N
RC8 pyrimidine F6 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
RC8 Z31190928 F7 fragment CC(C)Nc1ncccn1 InChI=1S/C7H11N3/c1-6(2)10-7-8-4-3-5-9-7/h3-6H,1-2H3,(H,8,9,10) FTCYIGBVOHNHCD-UHFFFAOYSA-N
RC8 Z54628578 F8 fragment CNc1ncccn1 InChI=1S/C5H7N3/c1-6-5-7-3-2-4-8-5/h2-4H,1H3,(H,6,7,8) BQNXHDSGGRTFNX-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
RC8 C2 S1 1
RC8 C4 S1 1
RC8 C5 S1 1
RC8 C6 S1 1
RC8 C8 S1 1
RC8 N1 S1 1
RC8 N9 S1 1
RC8 N7 S1 1
RC8 N3 S1 1
RC8 N6 S1 1
RC8 "CA'" S1 1
RC8 "C1'" S1 1
RC8 "C6'" S1 1
RC8 "C5'" S1 1
RC8 "C4'" S1 1
RC8 "C3'" S1 1
RC8 "C2'" S1 1
RC8 C1B S1 1
RC8 N1B S1 1
RC8 C5B S1 1
RC8 C4B S1 1
RC8 C3B S1 1
RC8 C2B S1 1
RC8 N1 F1 1
RC8 C6 F1 1
RC8 C5 F1 1
RC8 C4 F1 1
RC8 N3 F1 1
RC8 C2 F1 1
RC8 N9 F1 1
RC8 C8 F1 1
RC8 N7 F1 1
RC8 N6 F1 1
RC8 C4 F2 1
RC8 C5 F2 1
RC8 N7 F2 1
RC8 C8 F2 1
RC8 N9 F2 1
RC8 "C1'" F3 1
RC8 "C6'" F3 1
RC8 "C5'" F3 1
RC8 "C4'" F3 1
RC8 "C3'" F3 1
RC8 "C2'" F3 1
RC8 N7 F4 1
RC8 C8 F4 1
RC8 N9 F4 1
RC8 C4 F4 1
RC8 C5 F4 1
RC8 C6 F4 1
RC8 N1 F4 1
RC8 C2 F4 1
RC8 N3 F4 1
RC8 C1B F5 1
RC8 C2B F5 1
RC8 C3B F5 1
RC8 C4B F5 1
RC8 C5B F5 1
RC8 N1B F5 1
RC8 C5 F6 1
RC8 C4 F6 1
RC8 N3 F6 1
RC8 C2 F6 1
RC8 N1 F6 1
RC8 C6 F6 1
RC8 C15 F7 1
RC8 C12 F7 1
RC8 C13 F7 1
RC8 N2 F7 1
RC8 C2 F7 1
RC8 N3 F7 1
RC8 C4 F7 1
RC8 C5 F7 1
RC8 C6 F7 1
RC8 N1 F7 1
RC8 C12 F8 1
RC8 N2 F8 1
RC8 C2 F8 1
RC8 N3 F8 1
RC8 C4 F8 1
RC8 C5 F8 1
RC8 C6 F8 1
RC8 N1 F8 1
#
_pdbe_chem_comp_rdkit_properties.comp_id RC8
_pdbe_chem_comp_rdkit_properties.exactmw 431.243
_pdbe_chem_comp_rdkit_properties.amw 431.544
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 8
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 13
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 8
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 32
_pdbe_chem_comp_rdkit_properties.NumAtoms 61
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 8
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.333
_pdbe_chem_comp_rdkit_properties.NumRings 4
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 4
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 228.285
_pdbe_chem_comp_rdkit_properties.tpsa 100.780
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.640
_pdbe_chem_comp_rdkit_properties.CrippenMR 122.053
_pdbe_chem_comp_rdkit_properties.chi0v 15.539
_pdbe_chem_comp_rdkit_properties.chi1v 8.308
_pdbe_chem_comp_rdkit_properties.chi2v 3.562
_pdbe_chem_comp_rdkit_properties.chi3v 3.562
_pdbe_chem_comp_rdkit_properties.chi4v 2.228
_pdbe_chem_comp_rdkit_properties.chi0n 44.539
_pdbe_chem_comp_rdkit_properties.chi1n 22.611
_pdbe_chem_comp_rdkit_properties.chi2n 3.562
_pdbe_chem_comp_rdkit_properties.chi3n 3.562
_pdbe_chem_comp_rdkit_properties.chi4n 2.228
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.520
_pdbe_chem_comp_rdkit_properties.kappa1 5.880
_pdbe_chem_comp_rdkit_properties.kappa2 9.739
_pdbe_chem_comp_rdkit_properties.kappa3 4.700
_pdbe_chem_comp_rdkit_properties.Phi 1.789
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
RC8 UniChem ChEMBL CHEMBL518800
RC8 UniChem DrugBank DB08463
RC8 UniChem PDBe RC8
RC8 UniChem 'Guide to Pharmacology' 11065
RC8 UniChem 'PubChem DOTF' 136350043
RC8 UniChem ZINC ZINC000016052807
RC8 UniChem 'EPA CompTox Dashboard' DTXSID80436984
RC8 UniChem BRENDA 213645
RC8 UniChem ChemicalBook CB32518863
RC8 UniChem MedChemExpress HY-18340
RC8 UniChem 'Probes And Drugs' PD004376
RC8 UniChem BindingDb 50154937
RC8 UniChem eMolecules 29914649
RC8 UniChem SureChEMBL SCHEMBL13001902
RC8 UniChem 'PubChem TPHARMA' 15225697
RC8 UniChem PubChem 10224714
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
RC8 C2 -2.629 0.149 1.240 ETKDGv3 1
RC8 C4 -2.299 -1.882 0.081 ETKDGv3 2
RC8 C5 -1.021 -1.667 -0.067 ETKDGv3 3
RC8 C6 -0.421 -0.442 0.478 ETKDGv3 4
RC8 C8 -1.461 -3.353 -1.327 ETKDGv3 5
RC8 C9 -4.054 -3.246 -1.197 ETKDGv3 6
RC8 C10 -4.316 -2.413 -2.455 ETKDGv3 7
RC8 C12 -4.910 0.976 2.019 ETKDGv3 8
RC8 C14 -5.278 2.646 0.093 ETKDGv3 9
RC8 O1 -5.028 1.412 4.394 ETKDGv3 10
RC8 C15 -5.459 1.875 3.143 ETKDGv3 11
RC8 C13 -5.596 1.262 0.664 ETKDGv3 12
RC8 N2 -3.452 1.115 1.906 ETKDGv3 13
RC8 N1 -1.208 0.399 1.100 ETKDGv3 14
RC8 N9 -2.701 -2.996 -0.694 ETKDGv3 15
RC8 C11 -4.262 -4.738 -1.469 ETKDGv3 16
RC8 N7 -0.457 -2.603 -0.978 ETKDGv3 17
RC8 N3 -3.154 -0.942 0.742 ETKDGv3 18
RC8 N6 0.978 -0.172 0.325 ETKDGv3 19
RC8 "CA'" 1.586 1.050 0.851 ETKDGv3 20
RC8 "C1'" 3.061 1.077 0.555 ETKDGv3 21
RC8 "C6'" 3.518 1.575 -0.605 ETKDGv3 22
RC8 "C5'" 4.964 1.559 -0.908 ETKDGv3 23
RC8 "C4'" 5.843 1.036 -0.030 ETKDGv3 24
RC8 "C3'" 5.327 0.458 1.240 ETKDGv3 25
RC8 "C2'" 4.017 0.478 1.514 ETKDGv3 26
RC8 C1B 7.299 0.995 -0.316 ETKDGv3 27
RC8 N1B 8.035 0.077 0.250 ETKDGv3 28
RC8 C5B 9.451 -0.022 0.022 ETKDGv3 29
RC8 C4B 10.061 0.847 -0.789 ETKDGv3 30
RC8 C3B 9.268 1.909 -1.435 ETKDGv3 31
RC8 C2B 7.952 1.988 -1.212 ETKDGv3 32
RC8 H8 -1.365 -4.150 -2.051 ETKDGv3 33
RC8 H9 -4.786 -2.940 -0.417 ETKDGv3 34
RC8 H10 -4.187 -1.333 -2.226 ETKDGv3 35
RC8 H10A -5.356 -2.573 -2.811 ETKDGv3 36
RC8 H10B -3.609 -2.695 -3.264 ETKDGv3 37
RC8 H12 -5.150 -0.074 2.301 ETKDGv3 38
RC8 H14 -4.183 2.778 -0.033 ETKDGv3 39
RC8 H14A -5.674 3.445 0.753 ETKDGv3 40
RC8 H14B -5.758 2.752 -0.902 ETKDGv3 41
RC8 HO1 -4.110 1.764 4.532 ETKDGv3 42
RC8 H15 -5.150 2.935 2.995 ETKDGv3 43
RC8 H15A -6.570 1.846 3.131 ETKDGv3 44
RC8 H13 -6.698 1.163 0.776 ETKDGv3 45
RC8 H13A -5.278 0.497 -0.076 ETKDGv3 46
RC8 HN2 -2.981 1.954 2.314 ETKDGv3 47
RC8 H11 -5.320 -4.930 -1.747 ETKDGv3 48
RC8 H11A -3.609 -5.086 -2.297 ETKDGv3 49
RC8 H11B -4.028 -5.324 -0.555 ETKDGv3 50
RC8 HN6 1.570 -0.873 -0.176 ETKDGv3 51
RC8 "HA'" 1.426 1.098 1.950 ETKDGv3 52
RC8 "HA'A" 1.088 1.936 0.400 ETKDGv3 53
RC8 "H6'" 2.833 1.989 -1.336 ETKDGv3 54
RC8 "H5'" 5.286 1.949 -1.864 ETKDGv3 55
RC8 "H3'" 6.009 0.022 1.958 ETKDGv3 56
RC8 "H2'" 3.658 0.051 2.442 ETKDGv3 57
RC8 H5B 10.020 -0.804 0.508 ETKDGv3 58
RC8 H4B 11.126 0.779 -0.966 ETKDGv3 59
RC8 H3B 9.755 2.630 -2.079 ETKDGv3 60
RC8 H2B 7.387 2.791 -1.667 ETKDGv3 61
#