data_REH
#
_chem_comp.id REH
_chem_comp.name "1-(4-fluoranylspiro[2~{H}-indole-3,1'-cyclobutane]-1-yl)ethanone"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C13 H14 F N O"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2022-11-30
_chem_comp.pdbx_modified_date 2022-12-09
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 219.255
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code REH
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 8BT5
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
REH C01 C1 C 0 1 N N N N N N -3.837 8.415 6.809 -3.567 0.716 -0.001 C01 REH 1
REH C02 C2 C 0 1 N N N N N N -2.330 8.191 6.698 -2.773 -0.564 0.001 C02 REH 2
REH C05 C3 C 0 1 N N N N N N -0.348 6.642 6.304 -0.545 -1.696 0.003 C05 REH 3
REH C06 C4 C 0 1 N N N N N N -0.270 5.394 5.483 0.872 -1.122 0.001 C06 REH 4
REH C07 C5 C 0 1 N N N N N N 1.209 5.000 5.485 1.814 -1.685 -1.064 C07 REH 5
REH C08 C6 C 0 1 N N N N N N 1.366 5.777 4.184 2.263 -2.706 -0.003 C08 REH 6
REH C09 C7 C 0 1 N N N N N N -0.115 5.504 3.966 1.819 -1.686 1.060 C09 REH 7
REH C10 C8 C 0 1 Y N N N N N -1.650 4.751 5.661 0.700 0.372 0.000 C10 REH 8
REH C11 C9 C 0 1 Y N N N N N -2.075 3.480 5.342 1.624 1.403 0.001 C11 REH 9
REH C12 C10 C 0 1 Y N N N N N -3.389 3.044 5.575 1.197 2.720 -0.000 C12 REH 10
REH C13 C11 C 0 1 Y N N N N N -4.315 3.922 6.151 -0.156 3.004 -0.002 C13 REH 11
REH C14 C12 C 0 1 Y N N N N N -3.898 5.214 6.478 -1.079 1.981 -0.002 C14 REH 12
REH C15 C13 C 0 1 Y N N N N N -2.515 5.592 6.206 -0.660 0.650 -0.000 C15 REH 13
REH F16 F1 F 0 1 N N N N N N -1.109 2.713 4.800 2.945 1.123 0.003 F16 REH 14
REH N04 N1 N 0 1 N N N N N N -1.781 6.881 6.430 -1.426 -0.521 0.002 N04 REH 15
REH O03 O1 O 0 1 N N N N N N -1.575 9.096 6.836 -3.345 -1.633 0.001 O03 REH 16
REH H1 H1 H 0 1 N N N N N N -4.036 9.476 7.020 -4.632 0.483 -0.001 H1 REH 17
REH H2 H2 H 0 1 N N N N N N -4.320 8.133 5.862 -3.323 1.296 0.889 H2 REH 18
REH H3 H3 H 0 1 N N N N N N -4.240 7.797 7.625 -3.322 1.295 -0.891 H3 REH 19
REH H4 H4 H 0 1 N N N N N N 0.113 6.492 7.291 -0.713 -2.297 -0.891 H4 REH 20
REH H5 H5 H 0 1 N N N N N N 0.146 7.481 5.792 -0.713 -2.295 0.899 H5 REH 21
REH H6 H6 H 0 1 N N N N N N 1.394 3.919 5.396 1.297 -2.134 -1.912 H6 REH 22
REH H7 H7 H 0 1 N N N N N N 1.787 5.403 6.330 2.599 -0.991 -1.365 H7 REH 23
REH H8 H8 H 0 1 N N N N N N 2.037 5.315 3.445 1.673 -3.622 -0.002 H8 REH 24
REH H9 H9 H 0 1 N N N N N N 1.630 6.838 4.306 3.337 -2.895 -0.007 H9 REH 25
REH H10 H10 H 0 1 N N N N N N -0.670 6.337 3.510 2.606 -0.993 1.357 H10 REH 26
REH H11 H11 H 0 1 N N N N N N -0.331 4.576 3.417 1.306 -2.135 1.911 H11 REH 27
REH H12 H12 H 0 1 N N N N N N -3.683 2.039 5.312 1.919 3.523 -0.000 H12 REH 28
REH H13 H13 H 0 1 N N N N N N -5.331 3.607 6.339 -0.490 4.031 -0.003 H13 REH 29
REH H14 H14 H 0 1 N N N N N N -4.585 5.919 6.923 -2.135 2.211 -0.002 H14 REH 30
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
REH C09 C08 SING N N 1
REH C09 C06 SING N N 2
REH C08 C07 SING N N 3
REH F16 C11 SING N N 4
REH C11 C12 DOUB Y N 5
REH C11 C10 SING Y N 6
REH C06 C07 SING N N 7
REH C06 C10 SING N N 8
REH C06 C05 SING N N 9
REH C12 C13 SING Y N 10
REH C10 C15 DOUB Y N 11
REH C13 C14 DOUB Y N 12
REH C15 N04 SING N N 13
REH C15 C14 SING Y N 14
REH C05 N04 SING N N 15
REH N04 C02 SING N N 16
REH C02 C01 SING N N 17
REH C02 O03 DOUB N N 18
REH C01 H1 SING N N 19
REH C01 H2 SING N N 20
REH C01 H3 SING N N 21
REH C05 H4 SING N N 22
REH C05 H5 SING N N 23
REH C07 H6 SING N N 24
REH C07 H7 SING N N 25
REH C08 H8 SING N N 26
REH C08 H9 SING N N 27
REH C09 H10 SING N N 28
REH C09 H11 SING N N 29
REH C12 H12 SING N N 30
REH C13 H13 SING N N 31
REH C14 H14 SING N N 32
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
REH InChI InChI 1.06 InChI=1S/C13H14FNO/c1-9(16)15-8-13(6-3-7-13)12-10(14)4-2-5-11(12)15/h2,4-5H,3,6-8H2,1H3
REH InChIKey InChI 1.06 WXJBYBVEXXHQQN-UHFFFAOYSA-N
REH SMILES_CANONICAL CACTVS 3.385 CC(=O)N1CC2(CCC2)c3c(F)cccc13
REH SMILES CACTVS 3.385 CC(=O)N1CC2(CCC2)c3c(F)cccc13
REH SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 CC(=O)N1CC2(CCC2)c3c1cccc3F
REH SMILES "OpenEye OEToolkits" 3.1.0.0 CC(=O)N1CC2(CCC2)c3c1cccc3F
#
_pdbx_chem_comp_identifier.comp_id REH
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 3.1.0.0
_pdbx_chem_comp_identifier.identifier "1-(4-fluoranylspiro[2~{H}-indole-3,1'-cyclobutane]-1-yl)ethanone"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
REH 'Create component' 2022-11-30 PDBE
REH 'Initial release' 2022-12-14 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
REH C01 C 7.813 3.507 1
REH C02 C 8.423 2.136 2
REH C05 C 8.005 -0.504 3
REH C06 C 6.791 -1.385 4
REH C07 C 5.730 -2.446 5
REH C08 C 6.791 -3.507 6
REH C09 C 7.852 -2.446 7
REH C10 C 5.577 -0.504 8
REH C11 C 4.054 -0.852 9
REH C12 C 3.000 0.301 10
REH C13 C 3.483 1.787 11
REH C14 C 5.014 2.100 12
REH C15 C 6.041 0.923 13
REH F16 F 3.607 -2.284 14
REH N04 N 7.541 0.923 15
REH O03 O 9.915 1.980 16
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
REH C09 C08 SINGLE NONE 1
REH C09 C06 SINGLE NONE 2
REH C08 C07 SINGLE NONE 3
REH F16 C11 SINGLE NONE 4
REH C11 C12 SINGLE NONE 5
REH C11 C10 DOUBLE NONE 6
REH C06 C07 SINGLE NONE 7
REH C06 C10 SINGLE NONE 8
REH C06 C05 SINGLE NONE 9
REH C12 C13 DOUBLE NONE 10
REH C10 C15 SINGLE NONE 11
REH C13 C14 SINGLE NONE 12
REH C15 N04 SINGLE NONE 13
REH C15 C14 DOUBLE NONE 14
REH C05 N04 SINGLE NONE 15
REH N04 C02 SINGLE NONE 16
REH C02 C01 SINGLE NONE 17
REH C02 O03 DOUBLE NONE 18
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
REH MurckoScaffold S1 scaffold c1ccc2c(c1)NCC21CCC1 InChI=1S/C11H13N/c1-2-5-10-9(4-1)11(8-12-10)6-3-7-11/h1-2,4-5,12H,3,6-8H2 KCKYRVLMXBTLOO-UHFFFAOYSA-N
REH amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
REH cyclobutane F2 fragment C1CCC1 InChI=1S/C4H8/c1-2-4-3-1/h1-4H2 PMPVIKIVABFJJI-UHFFFAOYSA-N
REH phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
REH C05 S1 1
REH C06 S1 1
REH C07 S1 1
REH C08 S1 1
REH C09 S1 1
REH C10 S1 1
REH C11 S1 1
REH C12 S1 1
REH C13 S1 1
REH C14 S1 1
REH C15 S1 1
REH N04 S1 1
REH N04 F1 1
REH C02 F1 1
REH O03 F1 1
REH C01 F1 1
REH C06 F2 1
REH C09 F2 1
REH C08 F2 1
REH C07 F2 1
REH C10 F3 1
REH C11 F3 1
REH C12 F3 1
REH C13 F3 1
REH C14 F3 1
REH C15 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id REH
_pdbe_chem_comp_rdkit_properties.exactmw 219.106
_pdbe_chem_comp_rdkit_properties.amw 219.259
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 2
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 0
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 1
_pdbe_chem_comp_rdkit_properties.NumHBD 0
_pdbe_chem_comp_rdkit_properties.NumHBA 1
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 16
_pdbe_chem_comp_rdkit_properties.NumAtoms 30
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 3
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.462
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 1
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 113.731
_pdbe_chem_comp_rdkit_properties.tpsa 20.310
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.179
_pdbe_chem_comp_rdkit_properties.CrippenMR 58.866
_pdbe_chem_comp_rdkit_properties.chi0v 7.733
_pdbe_chem_comp_rdkit_properties.chi1v 4.314
_pdbe_chem_comp_rdkit_properties.chi2v 2.391
_pdbe_chem_comp_rdkit_properties.chi3v 2.391
_pdbe_chem_comp_rdkit_properties.chi4v 1.684
_pdbe_chem_comp_rdkit_properties.chi0n 21.733
_pdbe_chem_comp_rdkit_properties.chi1n 11.314
_pdbe_chem_comp_rdkit_properties.chi2n 2.391
_pdbe_chem_comp_rdkit_properties.chi3n 2.391
_pdbe_chem_comp_rdkit_properties.chi4n 1.684
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.380
_pdbe_chem_comp_rdkit_properties.kappa1 2.893
_pdbe_chem_comp_rdkit_properties.kappa2 3.061
_pdbe_chem_comp_rdkit_properties.kappa3 1.086
_pdbe_chem_comp_rdkit_properties.Phi 0.553
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
REH UniChem PDBe REH
REH UniChem PubChem 127270027
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
REH C01 3.832 -0.672 0.013 ETKDGv3 1
REH C02 2.864 0.426 0.327 ETKDGv3 2
REH C05 0.823 -1.089 0.009 ETKDGv3 3
REH C06 -0.718 -0.849 0.012 ETKDGv3 4
REH C07 -1.512 -1.640 1.056 ETKDGv3 5
REH C08 -2.294 -2.316 -0.067 ETKDGv3 6
REH C09 -1.497 -1.541 -1.112 ETKDGv3 7
REH C10 -0.878 0.640 0.086 ETKDGv3 8
REH C11 -1.991 1.391 0.079 ETKDGv3 9
REH C12 -1.846 2.867 0.124 ETKDGv3 10
REH C13 -0.621 3.425 0.158 ETKDGv3 11
REH C14 0.592 2.571 0.162 ETKDGv3 12
REH C15 0.435 1.237 0.151 ETKDGv3 13
REH F16 -3.224 0.829 0.021 ETKDGv3 14
REH N04 1.450 0.235 0.131 ETKDGv3 15
REH O03 3.303 1.501 0.815 ETKDGv3 16
REH H1 3.630 -1.074 -1.002 ETKDGv3 17
REH H2 3.728 -1.486 0.760 ETKDGv3 18
REH H3 4.875 -0.291 0.039 ETKDGv3 19
REH H4 1.159 -1.563 -0.938 ETKDGv3 20
REH H5 1.140 -1.727 0.861 ETKDGv3 21
REH H6 -2.163 -1.011 1.702 ETKDGv3 22
REH H7 -0.907 -2.372 1.634 ETKDGv3 23
REH H8 -2.109 -3.411 -0.115 ETKDGv3 24
REH H9 -3.371 -2.040 -0.062 ETKDGv3 25
REH H10 -2.137 -0.856 -1.710 ETKDGv3 26
REH H11 -0.882 -2.219 -1.742 ETKDGv3 27
REH H12 -2.728 3.494 0.120 ETKDGv3 28
REH H13 -0.519 4.503 0.181 ETKDGv3 29
REH H14 1.565 3.037 0.157 ETKDGv3 30
#