data_RG6
#
_chem_comp.id RG6
_chem_comp.name 2-chloro-4,6-bis[(trifluoromethyl)sulfanyl]phenol
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C8 H3 Cl F6 O S2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2023-05-09
_chem_comp.pdbx_modified_date 2023-06-09
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 328.682
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code RG6
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7FXG
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
RG6 C11 C1 C 0 1 Y N N N N N 4.892 7.425 20.698 0.760 0.422 0.006 C11 RG6 1
RG6 C15 C2 C 0 1 N N N N N N 6.028 7.193 23.198 3.422 1.287 -0.005 C15 RG6 2
RG6 C1 C3 C 0 1 N N N N N N 1.275 5.266 18.768 -3.461 1.192 0.002 C1 RG6 3
RG6 S2 S1 S 0 1 N N N N N N 2.620 4.309 19.333 -3.137 -0.592 0.003 S2 RG6 4
RG6 F3 F1 F 0 1 N N N N N N 0.303 4.439 18.667 -2.894 1.769 -1.140 F3 RG6 5
RG6 F4 F2 F 0 1 N N N N N N 0.997 6.291 19.577 -4.842 1.416 0.000 F4 RG6 6
RG6 F5 F3 F 0 1 N N N N N N 1.513 5.827 17.579 -2.897 1.770 1.145 F5 RG6 7
RG6 C6 C4 C 0 1 Y N N N N N 3.798 5.640 19.434 -1.377 -0.676 0.005 C6 RG6 8
RG6 C7 C5 C 0 1 Y N N N N N 4.662 5.961 18.323 -0.738 -1.913 0.006 C7 RG6 9
RG6 C8 C6 C 0 1 Y N N N N N 3.940 6.371 20.616 -0.626 0.491 0.005 C8 RG6 10
RG6 C9 C7 C 0 1 Y N N N N N 5.623 6.936 18.477 0.647 -1.978 0.013 C9 RG6 11
RG6 O10 O1 O 0 1 N N N N N N 4.628 5.280 17.136 -1.472 -3.059 0.006 O10 RG6 12
RG6 C12 C8 C 0 1 Y N N N N N 5.739 7.657 19.657 1.395 -0.814 0.007 C12 RG6 13
RG6 CL13 CL1 CL 0 0 N N N N N N 6.733 7.429 17.259 1.443 -3.520 0.014 CL13 RG6 14
RG6 S14 S2 S 0 1 N N N N N N 5.146 8.352 22.182 1.716 1.903 -0.001 S14 RG6 15
RG6 F16 F4 F 0 1 N N N N N N 6.391 7.794 24.339 3.633 0.505 -1.146 F16 RG6 16
RG6 F17 F5 F 0 1 N N N N N N 7.082 6.598 22.666 4.308 2.369 -0.011 F17 RG6 17
RG6 F18 F6 F 0 1 N N N N N N 5.341 6.114 23.477 3.641 0.511 1.139 F18 RG6 18
RG6 H19 H1 H 0 1 N N N N N N 3.324 6.135 21.471 -1.120 1.452 0.004 H19 RG6 19
RG6 H20 H3 H 0 1 N N N N N N 5.272 5.646 16.542 -1.684 -3.391 -0.877 H20 RG6 20
RG6 H21 H4 H 0 1 N N N N N N 6.508 8.409 19.751 2.474 -0.867 0.004 H21 RG6 21
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
RG6 C1 S2 SING N N 1
RG6 C1 F3 SING N N 2
RG6 C1 F4 SING N N 3
RG6 C1 F5 SING N N 4
RG6 S2 C6 SING N N 5
RG6 C6 C7 DOUB Y N 6
RG6 C6 C8 SING Y N 7
RG6 C7 C9 SING Y N 8
RG6 C7 O10 SING N N 9
RG6 C8 C11 DOUB Y N 10
RG6 C9 C12 DOUB Y N 11
RG6 C11 C12 SING Y N 12
RG6 C11 S14 SING N N 13
RG6 S14 C15 SING N N 14
RG6 C15 F16 SING N N 15
RG6 C15 F17 SING N N 16
RG6 C15 F18 SING N N 17
RG6 C8 H19 SING N N 18
RG6 O10 H20 SING N N 19
RG6 C12 H21 SING N N 20
RG6 CL13 C9 SING N N 21
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
RG6 SMILES ACDLabs 12.01 Oc1c(SC(F)(F)F)cc(cc1Cl)SC(F)(F)F
RG6 InChI InChI 1.06 InChI=1S/C8H3ClF6OS2/c9-4-1-3(17-7(10,11)12)2-5(6(4)16)18-8(13,14)15/h1-2,16H
RG6 InChIKey InChI 1.06 VFNOHWLGFSZWDJ-UHFFFAOYSA-N
RG6 SMILES_CANONICAL CACTVS 3.385 Oc1c(Cl)cc(SC(F)(F)F)cc1SC(F)(F)F
RG6 SMILES CACTVS 3.385 Oc1c(Cl)cc(SC(F)(F)F)cc1SC(F)(F)F
RG6 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 c1c(cc(c(c1SC(F)(F)F)O)Cl)SC(F)(F)F
RG6 SMILES "OpenEye OEToolkits" 2.0.7 c1c(cc(c(c1SC(F)(F)F)O)Cl)SC(F)(F)F
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
RG6 "SYSTEMATIC NAME" ACDLabs 12.01 2-chloro-4,6-bis[(trifluoromethyl)sulfanyl]phenol
RG6 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 2-chloranyl-4,6-bis(trifluoromethylsulfanyl)phenol
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
RG6 'Create component' 2023-05-09 RCSB
RG6 'Initial release' 2023-06-14 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
RG6 C11 C 7.702 -1.024 1
RG6 C15 C 9.002 -3.275 2
RG6 C1 C 7.702 3.475 3
RG6 S2 S 6.404 2.725 4
RG6 F3 F 9.002 4.226 5
RG6 F4 F 6.952 4.774 6
RG6 F5 F 8.453 2.176 7
RG6 C6 C 6.404 1.226 8
RG6 C7 C 5.104 0.475 9
RG6 C8 C 7.702 0.475 10
RG6 C9 C 5.104 -1.024 11
RG6 O10 O 3.805 1.226 12
RG6 C12 C 6.404 -1.774 13
RG6 CL13 Cl 3.805 -1.774 14
RG6 S14 S 9.002 -1.774 15
RG6 F16 F 9.002 -4.774 16
RG6 F17 F 10.502 -3.275 17
RG6 F18 F 7.502 -3.275 18
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
RG6 C1 S2 SINGLE NONE 1
RG6 C1 F3 SINGLE NONE 2
RG6 C1 F4 SINGLE NONE 3
RG6 C1 F5 SINGLE NONE 4
RG6 S2 C6 SINGLE NONE 5
RG6 C6 C7 DOUBLE NONE 6
RG6 C6 C8 SINGLE NONE 7
RG6 C7 C9 SINGLE NONE 8
RG6 C7 O10 SINGLE NONE 9
RG6 C8 C11 DOUBLE NONE 10
RG6 C9 C12 DOUBLE NONE 11
RG6 C11 C12 SINGLE NONE 12
RG6 C11 S14 SINGLE NONE 13
RG6 S14 C15 SINGLE NONE 14
RG6 C15 F16 SINGLE NONE 15
RG6 C15 F17 SINGLE NONE 16
RG6 C15 F18 SINGLE NONE 17
RG6 CL13 C9 SINGLE NONE 18
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
RG6 MurckoScaffold S1 scaffold c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
RG6 phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
RG6 C11 S1 1
RG6 C6 S1 1
RG6 C7 S1 1
RG6 C8 S1 1
RG6 C9 S1 1
RG6 C12 S1 1
RG6 C11 F1 1
RG6 C8 F1 1
RG6 C6 F1 1
RG6 C7 F1 1
RG6 C9 F1 1
RG6 C12 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id RG6
_pdbe_chem_comp_rdkit_properties.exactmw 327.922
_pdbe_chem_comp_rdkit_properties.amw 328.686
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 1
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 3
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 18
_pdbe_chem_comp_rdkit_properties.NumAtoms 21
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 10
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.250
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 114.800
_pdbe_chem_comp_rdkit_properties.tpsa 20.230
_pdbe_chem_comp_rdkit_properties.CrippenClogP 4.591
_pdbe_chem_comp_rdkit_properties.CrippenMR 57.471
_pdbe_chem_comp_rdkit_properties.chi0v 10.259
_pdbe_chem_comp_rdkit_properties.chi1v 5.854
_pdbe_chem_comp_rdkit_properties.chi2v 2.920
_pdbe_chem_comp_rdkit_properties.chi3v 2.920
_pdbe_chem_comp_rdkit_properties.chi4v 2.284
_pdbe_chem_comp_rdkit_properties.chi0n 10.870
_pdbe_chem_comp_rdkit_properties.chi1n 5.252
_pdbe_chem_comp_rdkit_properties.chi2n 1.291
_pdbe_chem_comp_rdkit_properties.chi3n 1.291
_pdbe_chem_comp_rdkit_properties.chi4n 0.802
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.410
_pdbe_chem_comp_rdkit_properties.kappa1 11.419
_pdbe_chem_comp_rdkit_properties.kappa2 5.297
_pdbe_chem_comp_rdkit_properties.kappa3 5.068
_pdbe_chem_comp_rdkit_properties.Phi 3.361
#
_pdbe_chem_comp_external_mappings.comp_id RG6
_pdbe_chem_comp_external_mappings.source UniChem
_pdbe_chem_comp_external_mappings.resource PDBe
_pdbe_chem_comp_external_mappings.resource_id RG6
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
RG6 C11 1.014 -0.733 0.733 ETKDGv3 1
RG6 C15 3.611 -0.232 1.092 ETKDGv3 2
RG6 C1 -3.037 1.395 1.111 ETKDGv3 3
RG6 S2 -1.753 2.179 0.079 ETKDGv3 4
RG6 F3 -3.983 2.343 1.448 ETKDGv3 5
RG6 F4 -2.473 0.891 2.269 ETKDGv3 6
RG6 F5 -3.653 0.373 0.414 ETKDGv3 7
RG6 C6 -0.787 0.676 -0.142 ETKDGv3 8
RG6 C7 -0.973 -0.151 -1.195 ETKDGv3 9
RG6 C8 0.259 0.365 0.859 ETKDGv3 10
RG6 C9 -0.142 -1.373 -1.320 ETKDGv3 11
RG6 O10 -1.930 0.107 -2.180 ETKDGv3 12
RG6 C12 0.796 -1.648 -0.405 ETKDGv3 13
RG6 CL13 -0.383 -2.468 -2.672 ETKDGv3 14
RG6 S14 2.271 -1.115 1.958 ETKDGv3 15
RG6 F16 3.296 1.108 0.967 ETKDGv3 16
RG6 F17 4.776 -0.354 1.825 ETKDGv3 17
RG6 F18 3.809 -0.780 -0.162 ETKDGv3 18
RG6 H19 0.411 1.034 1.697 ETKDGv3 19
RG6 H20 -2.531 0.921 -2.173 ETKDGv3 20
RG6 H21 1.402 -2.541 -0.497 ETKDGv3 21
#