data_RKP
#
_chem_comp.id RKP
_chem_comp.name "Lambda-Ru(phen)2(dppz) complex"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C42 H26 N8 Ru"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2011-10-18
_chem_comp.pdbx_modified_date 2013-04-17
_chem_comp.pdbx_ambiguous_flag Y
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 743.779
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code RKP
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag Y
_chem_comp.pdbx_model_coordinates_db_code 3U38
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
RKP RU RU RU 0 0 N N N N N N 9.537 9.528 0.181 ? ? ? RU RKP 1
RKP C1 C1 C 0 1 Y N N N N N 11.807 11.264 -0.869 ? ? ? C1 RKP 2
RKP N1 N1 N 0 1 Y N N N N N 10.422 10.970 1.039 ? ? ? N1 RKP 3
RKP C2 C2 C 0 1 Y N N N N N 11.523 9.857 -2.741 ? ? ? C2 RKP 4
RKP N2 N2 N 0 1 Y N N N N N 11.182 10.226 -1.498 ? ? ? N2 RKP 5
RKP C3 C3 C 0 1 Y N N N N N 12.519 10.518 -3.419 ? ? ? C3 RKP 6
RKP N3 N3 N 0 1 Y N N N N N 14.477 13.724 -1.424 ? ? ? N3 RKP 7
RKP C4 C4 C 0 1 Y N N N N N 13.177 11.567 -2.784 ? ? ? C4 RKP 8
RKP N4 N4 N 0 1 Y N N N N N 13.718 14.385 1.141 ? ? ? N4 RKP 9
RKP C5 C5 C 0 1 Y N N N N N 12.828 11.954 -1.497 ? ? ? C5 RKP 10
RKP N5 N5 N 0 1 Y N N N N N 10.696 8.279 1.026 ? ? ? N5 RKP 11
RKP C6 C6 C 0 1 Y N N N N N 13.471 13.024 -0.829 ? ? ? C6 RKP 12
RKP C7 C7 C 0 1 Y N N N N N 13.090 13.367 0.486 ? ? ? C7 RKP 13
RKP C8 C8 C 0 1 Y N N N N N 12.049 12.664 1.113 ? ? ? C8 RKP 14
RKP N8 N8 N 0 1 Y N N N N N 8.347 8.881 1.471 ? ? ? N8 RKP 15
RKP C9 C9 C 0 1 Y N N N N N 11.631 12.994 2.395 ? ? ? C9 RKP 16
RKP N9 N9 N 0 1 Y N N N N N 8.310 10.781 -0.644 ? ? ? N9 RKP 17
RKP C10 C10 C 0 1 Y N N N N N 11.422 11.627 0.434 ? ? ? C10 RKP 18
RKP C11 C11 C 0 1 Y N N N N N 10.608 12.291 3.011 ? ? ? C11 RKP 19
RKP C12 C12 C 0 1 Y N N N N N 10.014 11.286 2.285 ? ? ? C12 RKP 20
RKP N12 N12 N 0 1 Y N N N N N 8.979 8.462 -1.280 ? ? ? N12 RKP 21
RKP C13 C13 C 0 1 Y N N N N N 14.720 15.079 0.531 ? ? ? C13 RKP 22
RKP C14 C14 C 0 1 Y N N N N N 15.362 16.117 1.183 ? ? ? C14 RKP 23
RKP C15 C15 C 0 1 Y N N N N N 15.107 14.737 -0.770 ? ? ? C15 RKP 24
RKP C16 C16 C 0 1 Y N N N N N 16.131 15.443 -1.377 ? ? ? C16 RKP 25
RKP C17 C17 C 0 1 Y N N N N N 16.769 16.476 -0.709 ? ? ? C17 RKP 26
RKP C18 C18 C 0 1 Y N N N N N 16.383 16.818 0.562 ? ? ? C18 RKP 27
RKP C19 C19 C 0 1 Y N N N N N 10.108 7.581 2.031 ? ? ? C19 RKP 28
RKP C20 C20 C 0 1 Y N N N N N 11.949 7.894 0.703 ? ? ? C20 RKP 29
RKP C21 C21 C 0 1 Y N N N N N 12.633 6.915 1.457 ? ? ? C21 RKP 30
RKP C22 C22 C 0 1 Y N N N N N 10.713 6.596 2.815 ? ? ? C22 RKP 31
RKP C23 C23 C 0 1 Y N N N N N 9.997 5.993 3.862 ? ? ? C23 RKP 32
RKP C24 C24 C 0 1 Y N N N N N 8.686 6.391 4.113 ? ? ? C24 RKP 33
RKP C25 C25 C 0 1 Y N N N N N 8.093 7.379 3.308 ? ? ? C25 RKP 34
RKP C26 C26 C 0 1 Y N N N N N 8.811 7.947 2.281 ? ? ? C26 RKP 35
RKP C27 C27 C 0 1 Y N N N N N 6.289 8.801 2.644 ? ? ? C27 RKP 36
RKP C28 C28 C 0 1 Y N N N N N 7.103 9.325 1.638 ? ? ? C28 RKP 37
RKP C29 C29 C 0 1 Y N N N N N 7.681 10.261 -1.727 ? ? ? C29 RKP 38
RKP C30 C30 C 0 1 Y N N N N N 7.909 11.999 -0.246 ? ? ? C30 RKP 39
RKP C31 C31 C 0 1 Y N N N N N 6.966 12.719 -1.001 ? ? ? C31 RKP 40
RKP C32 C32 C 0 1 Y N N N N N 6.734 10.915 -2.519 ? ? ? C32 RKP 41
RKP C33 C33 C 0 1 Y N N N N N 6.190 10.279 -3.648 ? ? ? C33 RKP 42
RKP C34 C34 C 0 1 Y N N N N N 6.606 8.996 -3.989 ? ? ? C34 RKP 43
RKP C35 C35 C 0 1 Y N N N N N 7.554 8.352 -3.183 ? ? ? C35 RKP 44
RKP C36 C36 C 0 1 Y N N N N N 8.064 8.986 -2.070 ? ? ? C36 RKP 45
RKP C37 C37 C 0 1 Y N N N N N 8.950 6.501 -2.604 ? ? ? C37 RKP 46
RKP C38 C38 C 0 1 Y N N N N N 9.417 7.230 -1.507 ? ? ? C38 RKP 47
RKP C41 C41 C 0 1 Y N N N N N 12.033 6.240 2.524 ? ? ? C41 RKP 48
RKP C42 C42 C 0 1 Y N N N N N 6.788 7.810 3.485 ? ? ? C42 RKP 49
RKP C43 C43 C 0 1 Y N N N N N 6.355 12.205 -2.148 ? ? ? C43 RKP 50
RKP C44 C44 C 0 1 Y N N N N N 7.998 7.067 -3.445 ? ? ? C44 RKP 51
RKP H2 H2 H 0 1 N N N N N N 11.010 9.033 -3.214 ? ? ? H2 RKP 52
RKP H3 H3 H 0 1 N N N N N N 12.786 10.229 -4.425 ? ? ? H3 RKP 53
RKP H4 H4 H 0 1 N N N N N N 13.970 12.088 -3.300 ? ? ? H4 RKP 54
RKP H9 H9 H 0 1 N N N N N N 12.109 13.809 2.919 ? ? ? H9 RKP 55
RKP H11 H11 H 0 1 N N N N N N 10.291 12.522 4.017 ? ? ? H11 RKP 56
RKP H12 H12 H 0 1 N N N N N N 9.197 10.734 2.725 ? ? ? H12 RKP 57
RKP H14 H14 H 0 1 N N N N N N 15.064 16.383 2.186 ? ? ? H14 RKP 58
RKP H16 H16 H 0 1 N N N N N N 16.436 15.186 -2.381 ? ? ? H16 RKP 59
RKP H17 H17 H 0 1 N N N N N N 17.573 17.013 -1.191 ? ? ? H17 RKP 60
RKP H18 H18 H 0 1 N N N N N N 16.873 17.631 1.077 ? ? ? H18 RKP 61
RKP H20 H20 H 0 1 N N N N N N 12.438 8.343 -0.149 ? ? ? H20 RKP 62
RKP H21 H21 H 0 1 N N N N N N 13.655 6.680 1.200 ? ? ? H21 RKP 63
RKP H23 H23 H 0 1 N N N N N N 10.459 5.227 4.467 ? ? ? H23 RKP 64
RKP H24 H24 H 0 1 N N N N N N 8.128 5.943 4.922 ? ? ? H24 RKP 65
RKP H27 H27 H 0 1 N N N N N N 5.279 9.162 2.769 ? ? ? H27 RKP 66
RKP H28 H28 H 0 1 N N N N N N 6.720 10.098 0.989 ? ? ? H28 RKP 67
RKP H30 H30 H 0 1 N N N N N N 8.313 12.428 0.659 ? ? ? H30 RKP 68
RKP H31 H31 H 0 1 N N N N N N 6.702 13.716 -0.679 ? ? ? H31 RKP 69
RKP H33 H33 H 0 1 N N N N N N 5.450 10.786 -4.250 ? ? ? H33 RKP 70
RKP H34 H34 H 0 1 N N N N N N 6.204 8.504 -4.862 ? ? ? H34 RKP 71
RKP H37 H37 H 0 1 N N N N N N 9.325 5.507 -2.797 ? ? ? H37 RKP 72
RKP H38 H38 H 0 1 N N N N N N 10.140 6.787 -0.838 ? ? ? H38 RKP 73
RKP H41 H41 H 0 1 N N N N N N 12.559 5.486 3.091 ? ? ? H41 RKP 74
RKP H42 H42 H 0 1 N N N N N N 6.169 7.385 4.261 ? ? ? H42 RKP 75
RKP H43 H43 H 0 1 N N N N N N 5.632 12.773 -2.714 ? ? ? H43 RKP 76
RKP H44 H44 H 0 1 N N N N N N 7.612 6.514 -4.288 ? ? ? H44 RKP 77
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
RKP C1 N2 SING Y N 1
RKP C1 C5 DOUB Y N 2
RKP C1 C10 SING Y N 3
RKP N1 C10 SING Y N 4
RKP N1 C12 DOUB Y N 5
RKP C2 N2 DOUB Y N 6
RKP C2 C3 SING Y N 7
RKP C3 C4 DOUB Y N 8
RKP N3 C6 SING Y N 9
RKP N3 C15 DOUB Y N 10
RKP C4 C5 SING Y N 11
RKP N4 C7 SING Y N 12
RKP N4 C13 DOUB Y N 13
RKP C5 C6 SING Y N 14
RKP N5 C19 SING Y N 15
RKP N5 C20 DOUB Y N 16
RKP C6 C7 DOUB Y N 17
RKP C7 C8 SING Y N 18
RKP C8 C9 SING Y N 19
RKP C8 C10 DOUB Y N 20
RKP N8 C26 SING Y N 21
RKP N8 C28 DOUB Y N 22
RKP C9 C11 DOUB Y N 23
RKP N9 C29 SING Y N 24
RKP N9 C30 DOUB Y N 25
RKP C11 C12 SING Y N 26
RKP N12 C36 SING Y N 27
RKP N12 C38 DOUB Y N 28
RKP C13 C14 SING Y N 29
RKP C13 C15 SING Y N 30
RKP C14 C18 DOUB Y N 31
RKP C15 C16 SING Y N 32
RKP C16 C17 DOUB Y N 33
RKP C17 C18 SING Y N 34
RKP C19 C22 DOUB Y N 35
RKP C19 C26 SING Y N 36
RKP C20 C21 SING Y N 37
RKP C21 C41 DOUB Y N 38
RKP C22 C23 SING Y N 39
RKP C22 C41 SING Y N 40
RKP C23 C24 DOUB Y N 41
RKP C24 C25 SING Y N 42
RKP C25 C26 DOUB Y N 43
RKP C25 C42 SING Y N 44
RKP C27 C28 SING Y N 45
RKP C27 C42 DOUB Y N 46
RKP C29 C32 DOUB Y N 47
RKP C29 C36 SING Y N 48
RKP C30 C31 SING Y N 49
RKP C31 C43 DOUB Y N 50
RKP C32 C33 SING Y N 51
RKP C32 C43 SING Y N 52
RKP C33 C34 DOUB Y N 53
RKP C34 C35 SING Y N 54
RKP C35 C36 DOUB Y N 55
RKP C35 C44 SING Y N 56
RKP C37 C38 SING Y N 57
RKP C37 C44 DOUB Y N 58
RKP C2 H2 SING N N 59
RKP C3 H3 SING N N 60
RKP C4 H4 SING N N 61
RKP C9 H9 SING N N 62
RKP C11 H11 SING N N 63
RKP C12 H12 SING N N 64
RKP C14 H14 SING N N 65
RKP C16 H16 SING N N 66
RKP C17 H17 SING N N 67
RKP C18 H18 SING N N 68
RKP C20 H20 SING N N 69
RKP C21 H21 SING N N 70
RKP C23 H23 SING N N 71
RKP C24 H24 SING N N 72
RKP C27 H27 SING N N 73
RKP C28 H28 SING N N 74
RKP C30 H30 SING N N 75
RKP C31 H31 SING N N 76
RKP C33 H33 SING N N 77
RKP C34 H34 SING N N 78
RKP C37 H37 SING N N 79
RKP C38 H38 SING N N 80
RKP C41 H41 SING N N 81
RKP C42 H42 SING N N 82
RKP C43 H43 SING N N 83
RKP C44 H44 SING N N 84
RKP RU N1 SING N N 85
RKP RU N2 SING N N 86
RKP RU N5 SING N N 87
RKP RU N8 SING N N 88
RKP RU N9 SING N N 89
RKP RU N12 SING N N 90
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
RKP SMILES ACDLabs 12.01 n1c3c6c5c4c(c3nc2c1cccc2)cccn4[Ru]%10%14(n5ccc6)(n8c7c9c(ccc7ccc8)cccn9%10)n%12cccc%11ccc%13c(c%11%12)n%14ccc%13
RKP InChI InChI 1.03 InChI=1S/C18H10N4.2C12H8N2.Ru/c1-2-8-14-13(7-1)21-17-11-5-3-9-19-15(11)16-12(18(17)22-14)6-4-10-20-16;2*1-3-9-5-6-10-4-2-8-14-12(10)11(9)13-7-1;/h1-10H;2*1-8H;
RKP InChIKey InChI 1.03 OYSRBLHMGIHFCB-UHFFFAOYSA-N
RKP SMILES_CANONICAL CACTVS 3.370 "[Ru]|1|2|3(|n4cccc5ccc6cccn|1c6c45)(|n7cccc8ccc9cccn|2c9c78)|n%10cccc%11c%10c%12n|3cccc%12c%13nc%14ccccc%14nc%11%13"
RKP SMILES CACTVS 3.370 "[Ru]|1|2|3(|n4cccc5ccc6cccn|1c6c45)(|n7cccc8ccc9cccn|2c9c78)|n%10cccc%11c%10c%12n|3cccc%12c%13nc%14ccccc%14nc%11%13"
RKP SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 c1ccc2c(c1)nc3c4c5c6c(c3n2)C=CC=[N]6[Ru]78([N]5=CC=C4)([N]9=CC=Cc1c9c2c(cc1)C=CC=[N]72)[N]1=CC=Cc2c1c1c(cc2)C=CC=[N]81
RKP SMILES "OpenEye OEToolkits" 1.7.6 c1ccc2c(c1)nc3c4c5c6c(c3n2)C=CC=[N]6[Ru]78([N]5=CC=C4)([N]9=CC=Cc1c9c2c(cc1)C=CC=[N]72)[N]1=CC=Cc2c1c1c(cc2)C=CC=[N]81
#
_pdbx_chem_comp_identifier.comp_id RKP
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program ACDLabs
_pdbx_chem_comp_identifier.program_version 12.01
_pdbx_chem_comp_identifier.identifier
"(dipyrido[3,2-a:2',3'-c]phenazine-kappa~2~N~4~,N~5~)[bis(1,10-phenanthroline-kappa~2~N~1~,N~10~)]ruthenium"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
RKP 'Create component' 2011-10-18 PDBJ
RKP 'Modify model coordinates code' 2011-10-19 PDBJ
RKP 'Modify name' 2013-04-17 PDBJ
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
RKP RU Ru 9.446 -0.513 1
RKP C1 C 12.617 -2.886 2
RKP N1 N 12.617 -0.289 3
RKP C2 C 10.368 -4.184 4
RKP N2 N 11.118 -2.886 5
RKP C3 C 11.118 -5.482 6
RKP N3 N 15.051 -3.464 7
RKP C4 C 12.617 -5.482 8
RKP N4 N 15.505 -1.209 9
RKP C5 C 13.367 -4.184 10
RKP N5 N 6.338 -0.256 11
RKP C6 C 13.926 -2.472 12
RKP C7 C 14.222 -1.002 13
RKP C8 C 14.866 -1.588 14
RKP N8 N 7.837 -2.853 15
RKP C9 C 15.615 -0.289 16
RKP N9 N 8.013 1.588 17
RKP C10 C 13.367 -1.588 18
RKP C11 C 14.866 1.009 19
RKP C12 C 13.367 1.009 20
RKP N12 N 11.011 1.588 21
RKP C13 C 16.769 -1.514 22
RKP C14 C 18.190 -1.035 23
RKP C15 C 16.473 -2.985 24
RKP C16 C 17.598 -3.976 25
RKP C17 C 19.020 -3.498 26
RKP C18 C 19.316 -2.027 27
RKP C19 C 5.588 -1.554 28
RKP C20 C 5.588 1.042 29
RKP C21 C 4.090 1.042 30
RKP C22 C 4.090 -1.554 31
RKP C23 C 5.088 1.371 32
RKP C24 C 5.824 2.678 33
RKP C25 C 5.588 -4.151 34
RKP C26 C 6.338 -2.853 35
RKP C27 C 7.837 -5.449 36
RKP C28 C 8.586 -4.151 37
RKP C29 C 8.763 2.886 38
RKP C30 C 6.514 1.588 39
RKP C31 C 5.765 2.886 40
RKP C32 C 8.013 4.184 41
RKP C33 C 8.763 5.482 42
RKP C34 C 10.262 5.482 43
RKP C35 C 11.011 4.184 44
RKP C36 C 10.262 2.886 45
RKP C37 C 13.260 2.886 46
RKP C38 C 12.510 1.588 47
RKP C41 C 3.340 -0.256 48
RKP C42 C 6.338 -5.449 49
RKP C43 C 6.514 4.184 50
RKP C44 C 12.510 4.184 51
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
RKP C1 N2 SINGLE NONE 1
RKP C1 C5 DOUBLE NONE 2
RKP C1 C10 SINGLE NONE 3
RKP N1 C10 DOUBLE NONE 4
RKP N1 C12 SINGLE NONE 5
RKP C2 N2 DOUBLE NONE 6
RKP C2 C3 SINGLE NONE 7
RKP C3 C4 DOUBLE NONE 8
RKP N3 C6 DOUBLE NONE 9
RKP N3 C15 SINGLE NONE 10
RKP C4 C5 SINGLE NONE 11
RKP N4 C7 DOUBLE NONE 12
RKP N4 C13 SINGLE NONE 13
RKP C5 C6 SINGLE NONE 14
RKP N5 C19 SINGLE NONE 15
RKP N5 C20 DOUBLE NONE 16
RKP C6 C7 SINGLE NONE 17
RKP C7 C8 SINGLE NONE 18
RKP C8 C9 DOUBLE NONE 19
RKP C8 C10 SINGLE NONE 20
RKP N8 C26 DOUBLE NONE 21
RKP N8 C28 SINGLE NONE 22
RKP C9 C11 SINGLE NONE 23
RKP N9 C29 SINGLE NONE 24
RKP N9 C30 DOUBLE NONE 25
RKP C11 C12 DOUBLE NONE 26
RKP N12 C36 DOUBLE NONE 27
RKP N12 C38 SINGLE NONE 28
RKP C13 C14 SINGLE NONE 29
RKP C13 C15 DOUBLE NONE 30
RKP C14 C18 DOUBLE NONE 31
RKP C15 C16 SINGLE NONE 32
RKP C16 C17 DOUBLE NONE 33
RKP C17 C18 SINGLE NONE 34
RKP C19 C22 DOUBLE NONE 35
RKP C19 C26 SINGLE NONE 36
RKP C20 C21 SINGLE NONE 37
RKP C21 C41 DOUBLE NONE 38
RKP C22 C23 SINGLE NONE 39
RKP C22 C41 SINGLE NONE 40
RKP C23 C24 DOUBLE NONE 41
RKP C24 C25 SINGLE NONE 42
RKP C25 C26 SINGLE NONE 43
RKP C25 C42 DOUBLE NONE 44
RKP C27 C28 DOUBLE NONE 45
RKP C27 C42 SINGLE NONE 46
RKP C29 C32 DOUBLE NONE 47
RKP C29 C36 SINGLE NONE 48
RKP C30 C31 SINGLE NONE 49
RKP C31 C43 DOUBLE NONE 50
RKP C32 C33 SINGLE NONE 51
RKP C32 C43 SINGLE NONE 52
RKP C33 C34 DOUBLE NONE 53
RKP C34 C35 SINGLE NONE 54
RKP C35 C36 SINGLE NONE 55
RKP C35 C44 DOUBLE NONE 56
RKP C37 C38 DOUBLE NONE 57
RKP C37 C44 SINGLE NONE 58
RKP RU N1 SINGLE NONE 59
RKP RU N2 SINGLE NONE 60
RKP RU N5 SINGLE NONE 61
RKP RU N8 SINGLE NONE 62
RKP RU N9 SINGLE NONE 63
RKP RU N12 SINGLE NONE 64
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
RKP MurckoScaffold S1 scaffold 'c1ccc2nc3c4ccc[n+]5c4c4c(ccc[n+]4[Ru@OH21-6]546([n+]5cccc7ccc8ccc[n+]4c8c75)[n+]4cccc5ccc7ccc[n+]6c7c54)c3nc2c1' 'InChI=1S/C18H10N4.2C12H8N2.Ru/c1-2-8-14-13(7-1)21-17-11-5-3-9-19-15(11)16-12(18(17)22-14)6-4-10-20-16;2*1-3-9-5-6-10-4-2-8-14-12(10)11(9)13-7-1;/h1-10H;2*1-8H;' OYSRBLHMGIHFCB-UHFFFAOYSA-N
RKP phenanthroline F1 fragment c1cnc2c(c1)ccc1cccnc12 InChI=1S/C12H8N2/c1-3-9-5-6-10-4-2-8-14-12(10)11(9)13-7-1/h1-8H DGEZNRSVGBDHLK-UHFFFAOYSA-N
RKP phenazine F2 fragment c1ccc2nc3ccccc3nc2c1 InChI=1S/C12H8N2/c1-2-6-10-9(5-1)13-11-7-3-4-8-12(11)14-10/h1-8H PCNDJXKNXGMECE-UHFFFAOYSA-N
RKP phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
RKP pyrazine F4 fragment c1cnccn1 InChI=1S/C4H4N2/c1-2-6-4-3-5-1/h1-4H KYQCOXFCLRTKLS-UHFFFAOYSA-N
RKP pyridine F5 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N
RKP quinoline F6 fragment c1ccc2ncccc2c1 InChI=1S/C9H7N/c1-2-6-9-8(4-1)5-3-7-10-9/h1-7H SMWDFEZZVXVKRB-UHFFFAOYSA-N
RKP quinoxaline F7 fragment c1ccc2nccnc2c1 InChI=1S/C8H6N2/c1-2-4-8-7(3-1)9-5-6-10-8/h1-6H XSCHRSMBECNVNS-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
RKP RU S1 1
RKP C1 S1 1
RKP N1 S1 1
RKP C2 S1 1
RKP N2 S1 1
RKP C3 S1 1
RKP N3 S1 1
RKP C4 S1 1
RKP N4 S1 1
RKP C5 S1 1
RKP N5 S1 1
RKP C6 S1 1
RKP C7 S1 1
RKP C8 S1 1
RKP N8 S1 1
RKP C9 S1 1
RKP N9 S1 1
RKP C10 S1 1
RKP C11 S1 1
RKP C12 S1 1
RKP N12 S1 1
RKP C13 S1 1
RKP C14 S1 1
RKP C15 S1 1
RKP C16 S1 1
RKP C17 S1 1
RKP C18 S1 1
RKP C19 S1 1
RKP C20 S1 1
RKP C21 S1 1
RKP C22 S1 1
RKP C23 S1 1
RKP C24 S1 1
RKP C25 S1 1
RKP C26 S1 1
RKP C27 S1 1
RKP C28 S1 1
RKP C29 S1 1
RKP C30 S1 1
RKP C31 S1 1
RKP C32 S1 1
RKP C33 S1 1
RKP C34 S1 1
RKP C35 S1 1
RKP C36 S1 1
RKP C37 S1 1
RKP C38 S1 1
RKP C41 S1 1
RKP C42 S1 1
RKP C43 S1 1
RKP C44 S1 1
RKP C3 F1 1
RKP C2 F1 1
RKP N2 F1 1
RKP C1 F1 1
RKP C5 F1 1
RKP C4 F1 1
RKP C6 F1 1
RKP C7 F1 1
RKP C8 F1 1
RKP C10 F1 1
RKP N1 F1 1
RKP C12 F1 1
RKP C11 F1 1
RKP C9 F1 1
RKP C21 F1 2
RKP C20 F1 2
RKP N5 F1 2
RKP C19 F1 2
RKP C22 F1 2
RKP C41 F1 2
RKP C23 F1 2
RKP C24 F1 2
RKP C25 F1 2
RKP C26 F1 2
RKP N8 F1 2
RKP C28 F1 2
RKP C27 F1 2
RKP C42 F1 2
RKP C31 F1 3
RKP C30 F1 3
RKP N9 F1 3
RKP C29 F1 3
RKP C32 F1 3
RKP C43 F1 3
RKP C33 F1 3
RKP C34 F1 3
RKP C35 F1 3
RKP C36 F1 3
RKP N12 F1 3
RKP C38 F1 3
RKP C37 F1 3
RKP C44 F1 3
RKP C1 F2 1
RKP C10 F2 1
RKP C8 F2 1
RKP C7 F2 1
RKP C6 F2 1
RKP C5 F2 1
RKP N3 F2 1
RKP C15 F2 1
RKP C13 F2 1
RKP N4 F2 1
RKP C14 F2 1
RKP C18 F2 1
RKP C17 F2 1
RKP C16 F2 1
RKP C1 F3 1
RKP C5 F3 1
RKP C6 F3 1
RKP C7 F3 1
RKP C8 F3 1
RKP C10 F3 1
RKP C13 F3 2
RKP C14 F3 2
RKP C18 F3 2
RKP C17 F3 2
RKP C16 F3 2
RKP C15 F3 2
RKP C19 F3 3
RKP C22 F3 3
RKP C23 F3 3
RKP C24 F3 3
RKP C25 F3 3
RKP C26 F3 3
RKP C29 F3 4
RKP C32 F3 4
RKP C33 F3 4
RKP C34 F3 4
RKP C35 F3 4
RKP C36 F3 4
RKP C6 F4 1
RKP C7 F4 1
RKP N4 F4 1
RKP C13 F4 1
RKP C15 F4 1
RKP N3 F4 1
RKP C1 F5 1
RKP C5 F5 1
RKP C4 F5 1
RKP C3 F5 1
RKP C2 F5 1
RKP N2 F5 1
RKP C10 F5 2
RKP C8 F5 2
RKP C9 F5 2
RKP C11 F5 2
RKP C12 F5 2
RKP N1 F5 2
RKP C19 F5 3
RKP C22 F5 3
RKP C41 F5 3
RKP C21 F5 3
RKP C20 F5 3
RKP N5 F5 3
RKP C26 F5 4
RKP C25 F5 4
RKP C42 F5 4
RKP C27 F5 4
RKP C28 F5 4
RKP N8 F5 4
RKP C29 F5 5
RKP C32 F5 5
RKP C43 F5 5
RKP C31 F5 5
RKP C30 F5 5
RKP N9 F5 5
RKP C36 F5 6
RKP C35 F5 6
RKP C44 F5 6
RKP C37 F5 6
RKP C38 F5 6
RKP N12 F5 6
RKP C6 F6 1
RKP C7 F6 1
RKP C8 F6 1
RKP C10 F6 1
RKP C1 F6 1
RKP C5 F6 1
RKP N1 F6 1
RKP C12 F6 1
RKP C11 F6 1
RKP C9 F6 1
RKP C7 F6 2
RKP C6 F6 2
RKP C5 F6 2
RKP C1 F6 2
RKP C10 F6 2
RKP C8 F6 2
RKP N2 F6 2
RKP C2 F6 2
RKP C3 F6 2
RKP C4 F6 2
RKP C23 F6 3
RKP C24 F6 3
RKP C25 F6 3
RKP C26 F6 3
RKP C19 F6 3
RKP C22 F6 3
RKP N8 F6 3
RKP C28 F6 3
RKP C27 F6 3
RKP C42 F6 3
RKP C24 F6 4
RKP C23 F6 4
RKP C22 F6 4
RKP C19 F6 4
RKP C26 F6 4
RKP C25 F6 4
RKP N5 F6 4
RKP C20 F6 4
RKP C21 F6 4
RKP C41 F6 4
RKP C33 F6 5
RKP C34 F6 5
RKP C35 F6 5
RKP C36 F6 5
RKP C29 F6 5
RKP C32 F6 5
RKP N12 F6 5
RKP C38 F6 5
RKP C37 F6 5
RKP C44 F6 5
RKP C34 F6 6
RKP C33 F6 6
RKP C32 F6 6
RKP C29 F6 6
RKP C36 F6 6
RKP C35 F6 6
RKP N9 F6 6
RKP C30 F6 6
RKP C31 F6 6
RKP C43 F6 6
RKP C1 F7 1
RKP C10 F7 1
RKP C8 F7 1
RKP C7 F7 1
RKP C6 F7 1
RKP C5 F7 1
RKP N3 F7 1
RKP C15 F7 1
RKP C13 F7 1
RKP N4 F7 1
RKP C17 F7 2
RKP C18 F7 2
RKP C14 F7 2
RKP C13 F7 2
RKP C15 F7 2
RKP C16 F7 2
RKP N3 F7 2
RKP C6 F7 2
RKP C7 F7 2
RKP N4 F7 2
#
_pdbe_chem_comp_rdkit_properties.comp_id RKP
_pdbe_chem_comp_rdkit_properties.exactmw 744.132
_pdbe_chem_comp_rdkit_properties.amw 743.796
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 8
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 0
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 0
_pdbe_chem_comp_rdkit_properties.NumHBD 0
_pdbe_chem_comp_rdkit_properties.NumHBA 2
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 51
_pdbe_chem_comp_rdkit_properties.NumAtoms 77
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 9
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0
_pdbe_chem_comp_rdkit_properties.NumRings 14
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 11
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 3
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 10
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 7
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 1
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 324.512
_pdbe_chem_comp_rdkit_properties.tpsa 49.060
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.245
_pdbe_chem_comp_rdkit_properties.CrippenMR 170.874
_pdbe_chem_comp_rdkit_properties.chi0v 26.669
_pdbe_chem_comp_rdkit_properties.chi1v 19.690
_pdbe_chem_comp_rdkit_properties.chi2v 23.738
_pdbe_chem_comp_rdkit_properties.chi3v 23.738
_pdbe_chem_comp_rdkit_properties.chi4v 23.979
_pdbe_chem_comp_rdkit_properties.chi0n 50.931
_pdbe_chem_comp_rdkit_properties.chi1n 28.026
_pdbe_chem_comp_rdkit_properties.chi2n 9.812
_pdbe_chem_comp_rdkit_properties.chi3n 9.812
_pdbe_chem_comp_rdkit_properties.chi4n 8.090
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -6.437
_pdbe_chem_comp_rdkit_properties.kappa1 12.111
_pdbe_chem_comp_rdkit_properties.kappa2 7.503
_pdbe_chem_comp_rdkit_properties.kappa3 2.072
_pdbe_chem_comp_rdkit_properties.Phi 1.782
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
RKP UniChem PDBe 0TN
RKP UniChem PDBe RKP
RKP UniChem PubChem 57339425
RKP UniChem PubChem 76516056
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
RKP RU -17.183 -45.555 -23.506 ETKDGv3 1
RKP C1 1.102 -0.097 -2.675 ETKDGv3 2
RKP N1 0.832 2.160 -3.442 ETKDGv3 3
RKP C2 0.097 -1.841 -3.974 ETKDGv3 4
RKP N2 0.344 -0.576 -3.799 ETKDGv3 5
RKP C3 0.612 -2.834 -3.015 ETKDGv3 6
RKP N3 2.756 -1.338 0.331 ETKDGv3 7
RKP C4 1.331 -2.421 -1.967 ETKDGv3 8
RKP N4 3.222 1.362 0.679 ETKDGv3 9
RKP C5 1.593 -0.974 -1.767 ETKDGv3 10
RKP N5 -3.480 -0.432 -2.122 ETKDGv3 11
RKP C6 2.345 -0.499 -0.578 ETKDGv3 12
RKP C7 2.592 0.952 -0.386 ETKDGv3 13
RKP C8 2.077 1.899 -1.391 ETKDGv3 14
RKP N8 -3.740 0.070 0.674 ETKDGv3 15
RKP C9 2.250 3.229 -1.296 ETKDGv3 16
RKP N9 0.213 2.332 1.527 ETKDGv3 17
RKP C10 1.316 1.354 -2.541 ETKDGv3 18
RKP C11 1.690 4.115 -2.335 ETKDGv3 19
RKP C12 1.016 3.583 -3.360 ETKDGv3 20
RKP N12 -0.557 -0.324 0.830 ETKDGv3 21
RKP C13 3.672 0.433 1.677 ETKDGv3 22
RKP C14 4.337 0.916 2.905 ETKDGv3 23
RKP C15 3.442 -0.885 1.509 ETKDGv3 24
RKP C16 3.853 -1.846 2.553 ETKDGv3 25
RKP C17 4.450 -1.404 3.668 ETKDGv3 26
RKP C18 4.703 0.043 3.852 ETKDGv3 27
RKP C19 -3.100 0.820 -1.525 ETKDGv3 28
RKP C20 -3.339 -0.649 -3.398 ETKDGv3 29
RKP C21 -2.786 0.404 -4.272 ETKDGv3 30
RKP C22 -2.586 1.810 -2.289 ETKDGv3 31
RKP C23 -2.191 3.114 -1.694 ETKDGv3 32
RKP C24 -2.327 3.357 -0.384 ETKDGv3 33
RKP C25 -2.873 2.317 0.509 ETKDGv3 34
RKP C26 -3.272 1.020 -0.081 ETKDGv3 35
RKP C27 -3.522 1.402 2.670 ETKDGv3 36
RKP C28 -3.873 0.243 2.096 ETKDGv3 37
RKP C29 0.367 1.224 2.429 ETKDGv3 38
RKP C30 0.544 3.543 1.871 ETKDGv3 39
RKP C31 1.121 3.802 3.204 ETKDGv3 40
RKP C32 0.901 1.415 3.656 ETKDGv3 41
RKP C33 1.111 0.277 4.588 ETKDGv3 42
RKP C34 0.783 -0.977 4.249 ETKDGv3 43
RKP C35 0.190 -1.255 2.928 ETKDGv3 44
RKP C36 -0.034 -0.122 2.004 ETKDGv3 45
RKP C37 -0.735 -2.697 1.199 ETKDGv3 46
RKP C38 -0.930 -1.644 0.396 ETKDGv3 47
RKP C41 -2.428 1.578 -3.741 ETKDGv3 48
RKP C42 -2.999 2.500 1.831 ETKDGv3 49
RKP C43 1.296 2.784 4.053 ETKDGv3 50
RKP C44 -0.143 -2.492 2.537 ETKDGv3 51
RKP H2 -0.486 -2.163 -4.826 ETKDGv3 52
RKP H3 0.410 -3.887 -3.161 ETKDGv3 53
RKP H4 1.706 -3.151 -1.261 ETKDGv3 54
RKP H9 2.791 3.667 -0.467 ETKDGv3 55
RKP H11 1.823 5.187 -2.264 ETKDGv3 56
RKP H12 0.594 4.223 -4.124 ETKDGv3 57
RKP H14 4.514 1.975 3.044 ETKDGv3 58
RKP H16 3.661 -2.903 2.422 ETKDGv3 59
RKP H17 4.746 -2.103 4.439 ETKDGv3 60
RKP H18 5.183 0.393 4.757 ETKDGv3 61
RKP H20 -3.630 -1.602 -3.817 ETKDGv3 62
RKP H21 -2.668 0.223 -5.333 ETKDGv3 63
RKP H23 -1.787 3.889 -2.333 ETKDGv3 64
RKP H24 -2.029 4.318 0.016 ETKDGv3 65
RKP H27 -3.615 1.534 3.740 ETKDGv3 66
RKP H28 -4.253 -0.569 2.702 ETKDGv3 67
RKP H30 0.414 4.356 1.169 ETKDGv3 68
RKP H31 1.407 4.807 3.486 ETKDGv3 69
RKP H33 1.551 0.461 5.561 ETKDGv3 70
RKP H34 0.961 -1.785 4.949 ETKDGv3 71
RKP H37 -1.008 -3.692 0.872 ETKDGv3 72
RKP H38 -1.362 -1.782 -0.586 ETKDGv3 73
RKP H41 -2.019 2.354 -4.377 ETKDGv3 74
RKP H42 -2.707 3.434 2.293 ETKDGv3 75
RKP H43 1.727 2.965 5.030 ETKDGv3 76
RKP H44 0.014 -3.343 3.188 ETKDGv3 77
#