data_RND
#
_chem_comp.id RND
_chem_comp.name N-[1-(1H-indol-3-ylmethyl)piperidin-4-yl]-L-tryptophanamide
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C25 H29 N5 O"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2013-12-25
_chem_comp.pdbx_modified_date 2014-03-07
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 415.531
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code RND
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4NYM
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
RND C01 C01 C 0 1 Y N N N N N 35.710 30.014 24.701 -6.444 0.171 -0.631 C01 RND 1
RND C02 C02 C 0 1 Y N N N N N 35.641 30.062 26.141 -7.722 0.203 -0.149 C02 RND 2
RND C03 C03 C 0 1 Y N N N N N 34.450 29.829 26.816 -8.154 -0.744 0.770 C03 RND 3
RND C04 C04 C 0 1 Y N N N N N 33.316 29.536 26.078 -7.302 -1.732 1.212 C04 RND 4
RND C05 C05 C 0 1 Y N N N N N 33.387 29.482 24.607 -5.996 -1.784 0.735 C05 RND 5
RND C06 C06 C 0 1 Y N N N N N 34.554 29.717 23.945 -5.566 -0.825 -0.200 C06 RND 6
RND N07 N07 N 0 1 Y N N N N N 32.405 29.211 23.647 -4.932 -2.623 0.976 N07 RND 7
RND C08 C08 C 0 1 Y N N N N N 34.280 29.582 22.516 -4.168 -1.148 -0.497 C08 RND 8
RND C09 C09 C 0 1 Y N N N N N 32.921 29.269 22.425 -3.851 -2.228 0.235 C09 RND 9
RND C10 C10 C 0 1 N N N N N N 35.202 29.739 21.346 -3.260 -0.410 -1.446 C10 RND 10
RND N11 N11 N 0 1 N N N N N N 36.200 28.636 21.294 -2.738 0.794 -0.787 N11 RND 11
RND C12 C12 C 0 1 N N N N N N 37.170 27.959 22.201 -2.043 1.661 -1.747 C12 RND 12
RND C13 C13 C 0 1 N N N N N N 37.837 26.778 21.604 -1.641 2.968 -1.060 C13 RND 13
RND C14 C14 C 0 1 N N N N N N 38.426 27.140 20.317 -0.727 2.654 0.127 C14 RND 14
RND C15 C15 C 0 1 N N N N N N 37.374 27.646 19.427 -1.457 1.712 1.089 C15 RND 15
RND C16 C16 C 0 1 N N N N N N 36.767 28.901 19.984 -1.863 0.441 0.339 C16 RND 16
RND N17 N17 N 0 1 N N N N N N 39.423 28.233 20.458 0.498 2.010 -0.354 N17 RND 17
RND C18 C18 C 0 1 N N N N N N 40.824 28.032 20.831 1.631 2.091 0.370 C18 RND 18
RND C19 C19 C 0 1 N N S N N N 41.769 29.186 20.931 2.891 1.429 -0.125 C19 RND 19
RND O20 O20 O 0 1 N N N N N N 41.262 26.928 21.052 1.638 2.697 1.421 O20 RND 20
RND C21 C21 C 0 1 N N N N N N 41.679 29.955 22.264 2.840 -0.067 0.193 C21 RND 21
RND N22 N22 N 0 1 N N N N N N 41.599 30.068 19.845 4.055 2.031 0.539 N22 RND 22
RND C23 C23 C 0 1 Y N N N N N 40.471 30.725 22.742 4.040 -0.750 -0.409 C23 RND 23
RND N24 N24 N 0 1 Y N N N N N 38.918 31.536 24.183 5.349 -1.870 -1.809 N24 RND 24
RND C25 C25 C 0 1 Y N N N N N 40.023 30.735 24.066 4.094 -1.368 -1.600 C25 RND 25
RND C26 C26 C 0 1 Y N N N N N 39.552 31.602 22.020 5.372 -0.861 0.191 C26 RND 26
RND C27 C27 C 0 1 Y N N N N N 38.617 32.066 22.960 6.156 -1.577 -0.732 C27 RND 27
RND C28 C28 C 0 1 Y N N N N N 37.536 32.969 22.571 7.488 -1.843 -0.433 C28 RND 28
RND C29 C29 C 0 1 Y N N N N N 37.447 33.363 21.261 8.023 -1.403 0.757 C29 RND 29
RND C30 C30 C 0 1 Y N N N N N 38.382 32.899 20.303 7.246 -0.696 1.665 C30 RND 30
RND C31 C31 C 0 1 Y N N N N N 39.446 32.011 20.689 5.935 -0.424 1.391 C31 RND 31
RND H1 H1 H 0 1 N N N N N N 36.647 30.205 24.200 -6.116 0.911 -1.346 H1 RND 32
RND H2 H2 H 0 1 N N N N N N 36.534 30.284 26.706 -8.403 0.971 -0.486 H2 RND 33
RND H3 H3 H 0 1 N N N N N N 34.409 29.875 27.894 -9.167 -0.706 1.141 H3 RND 34
RND H4 H4 H 0 1 N N N N N N 32.379 29.347 26.580 -7.647 -2.464 1.927 H4 RND 35
RND H5 H5 H 0 1 N N N N N N 31.449 29.003 23.853 -4.946 -3.382 1.580 H5 RND 36
RND H6 H6 H 0 1 N N N N N N 32.377 29.101 21.507 -2.887 -2.714 0.238 H6 RND 37
RND H7 H7 H 0 1 N N N N N N 35.732 30.699 21.434 -2.430 -1.057 -1.731 H7 RND 38
RND H8 H8 H 0 1 N N N N N N 34.610 29.731 20.419 -3.819 -0.124 -2.336 H8 RND 39
RND H10 H10 H 0 1 N N N N N N 37.945 28.687 22.483 -1.150 1.154 -2.114 H10 RND 40
RND H11 H11 H 0 1 N N N N N N 36.630 27.632 23.101 -2.705 1.879 -2.585 H11 RND 41
RND H12 H12 H 0 1 N N N N N N 37.097 25.978 21.455 -1.112 3.604 -1.769 H12 RND 42
RND H13 H13 H 0 1 N N N N N N 38.628 26.424 22.281 -2.535 3.482 -0.706 H13 RND 43
RND H14 H14 H 0 1 N N N N N N 38.906 26.260 19.864 -0.472 3.579 0.645 H14 RND 44
RND H15 H15 H 0 1 N N N N N N 36.590 26.881 19.323 -0.795 1.451 1.915 H15 RND 45
RND H16 H16 H 0 1 N N N N N N 37.809 27.862 18.440 -2.347 2.207 1.477 H16 RND 46
RND H17 H17 H 0 1 N N N N N N 37.544 29.674 20.073 -2.396 -0.226 1.017 H17 RND 47
RND H18 H18 H 0 1 N N N N N N 35.974 29.254 19.308 -0.971 -0.060 -0.037 H18 RND 48
RND H19 H19 H 0 1 N N N N N N 39.116 29.169 20.286 0.493 1.526 -1.194 H19 RND 49
RND H20 H20 H 0 1 N N N N N N 42.787 28.773 20.878 2.975 1.568 -1.203 H20 RND 50
RND H21 H21 H 0 1 N N N N N N 41.879 29.209 23.047 2.845 -0.209 1.274 H21 RND 51
RND H22 H22 H 0 1 N N N N N N 42.500 30.686 22.236 1.929 -0.496 -0.225 H22 RND 52
RND H23 H23 H 0 1 N N N N N N 42.239 30.831 19.931 4.000 1.915 1.540 H23 RND 53
RND H24 H24 H 0 1 N N N N N N 41.774 29.581 18.989 4.916 1.649 0.177 H24 RND 54
RND H26 H26 H 0 1 N N N N N N 38.412 31.706 25.029 5.630 -2.358 -2.599 H26 RND 55
RND H27 H27 H 0 1 N N N N N N 40.481 30.191 24.878 3.268 -1.456 -2.290 H27 RND 56
RND H28 H28 H 0 1 N N N N N N 36.821 33.319 23.301 8.101 -2.392 -1.133 H28 RND 57
RND H29 H29 H 0 1 N N N N N N 36.657 34.033 20.956 9.058 -1.609 0.987 H29 RND 58
RND H30 H30 H 0 1 N N N N N N 38.295 33.215 19.274 7.681 -0.358 2.594 H30 RND 59
RND H31 H31 H 0 1 N N N N N N 40.158 31.663 19.955 5.336 0.126 2.102 H31 RND 60
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
RND C15 C16 SING N N 1
RND C15 C14 SING N N 2
RND N22 C19 SING N N 3
RND C16 N11 SING N N 4
RND C30 C31 DOUB Y N 5
RND C30 C29 SING Y N 6
RND C14 N17 SING N N 7
RND C14 C13 SING N N 8
RND N17 C18 SING N N 9
RND C31 C26 SING Y N 10
RND C18 C19 SING N N 11
RND C18 O20 DOUB N N 12
RND C19 C21 SING N N 13
RND C29 C28 DOUB Y N 14
RND N11 C10 SING N N 15
RND N11 C12 SING N N 16
RND C10 C08 SING N N 17
RND C13 C12 SING N N 18
RND C26 C23 SING Y N 19
RND C26 C27 DOUB Y N 20
RND C21 C23 SING N N 21
RND C09 C08 DOUB Y N 22
RND C09 N07 SING Y N 23
RND C08 C06 SING Y N 24
RND C28 C27 SING Y N 25
RND C23 C25 DOUB Y N 26
RND C27 N24 SING Y N 27
RND N07 C05 SING Y N 28
RND C06 C05 DOUB Y N 29
RND C06 C01 SING Y N 30
RND C25 N24 SING Y N 31
RND C05 C04 SING Y N 32
RND C01 C02 DOUB Y N 33
RND C04 C03 DOUB Y N 34
RND C02 C03 SING Y N 35
RND C01 H1 SING N N 36
RND C02 H2 SING N N 37
RND C03 H3 SING N N 38
RND C04 H4 SING N N 39
RND N07 H5 SING N N 40
RND C09 H6 SING N N 41
RND C10 H7 SING N N 42
RND C10 H8 SING N N 43
RND C12 H10 SING N N 44
RND C12 H11 SING N N 45
RND C13 H12 SING N N 46
RND C13 H13 SING N N 47
RND C14 H14 SING N N 48
RND C15 H15 SING N N 49
RND C15 H16 SING N N 50
RND C16 H17 SING N N 51
RND C16 H18 SING N N 52
RND N17 H19 SING N N 53
RND C19 H20 SING N N 54
RND C21 H21 SING N N 55
RND C21 H22 SING N N 56
RND N22 H23 SING N N 57
RND N22 H24 SING N N 58
RND N24 H26 SING N N 59
RND C25 H27 SING N N 60
RND C28 H28 SING N N 61
RND C29 H29 SING N N 62
RND C30 H30 SING N N 63
RND C31 H31 SING N N 64
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
RND SMILES ACDLabs 12.01 O=C(NC3CCN(Cc1cnc2ccccc12)CC3)C(N)Cc5c4ccccc4nc5
RND InChI InChI 1.03 InChI=1S/C25H29N5O/c26-22(13-17-14-27-23-7-3-1-5-20(17)23)25(31)29-19-9-11-30(12-10-19)16-18-15-28-24-8-4-2-6-21(18)24/h1-8,14-15,19,22,27-28H,9-13,16,26H2,(H,29,31)/t22-/m0/s1
RND InChIKey InChI 1.03 YLGBZXMOCLUOKZ-QFIPXVFZSA-N
RND SMILES_CANONICAL CACTVS 3.385 N[C@@H](Cc1c[nH]c2ccccc12)C(=O)NC3CCN(CC3)Cc4c[nH]c5ccccc45
RND SMILES CACTVS 3.385 N[CH](Cc1c[nH]c2ccccc12)C(=O)NC3CCN(CC3)Cc4c[nH]c5ccccc45
RND SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 c1ccc2c(c1)c(c[nH]2)C[C@@H](C(=O)NC3CCN(CC3)Cc4c[nH]c5c4cccc5)N
RND SMILES "OpenEye OEToolkits" 1.7.6 c1ccc2c(c1)c(c[nH]2)CC(C(=O)NC3CCN(CC3)Cc4c[nH]c5c4cccc5)N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
RND "SYSTEMATIC NAME" ACDLabs 12.01 N-[1-(1H-indol-3-ylmethyl)piperidin-4-yl]-L-tryptophanamide
RND "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 (2S)-2-azanyl-3-(1H-indol-3-yl)-N-[1-(1H-indol-3-ylmethyl)piperidin-4-yl]propanamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
RND 'Create component' 2013-12-25 RCSB
RND 'Initial release' 2014-03-12 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
RND C01 C 14.219 7.152 1
RND C02 C 15.105 8.363 2
RND C03 C 16.596 8.201 3
RND C04 C 17.201 6.828 4
RND C05 C 16.316 5.618 5
RND C06 C 14.824 5.780 6
RND N07 N 16.617 4.157 7
RND C08 C 14.217 4.418 8
RND C09 C 15.322 3.417 9
RND C10 C 12.749 4.109 10
RND N11 N 12.283 2.683 11
RND C12 C 13.285 1.567 12
RND C13 C 12.819 0.141 13
RND C14 C 11.351 -0.169 14
RND C15 C 10.349 0.948 15
RND C16 C 10.815 2.374 16
RND N17 N 10.885 -1.594 17
RND C18 C 9.417 -1.904 18
RND C19 C 8.951 -3.329 19
RND O20 O 8.415 -0.787 20
RND C21 C 7.483 -3.639 21
RND N22 N 9.953 -4.446 22
RND C23 C 7.018 -5.065 23
RND N24 N 7.018 -7.479 24
RND C25 C 7.893 -6.272 25
RND C26 C 5.598 -5.522 26
RND C27 C 5.598 -7.022 27
RND C28 C 4.299 -7.772 28
RND C29 C 3.000 -7.022 29
RND C30 C 3.000 -5.522 30
RND C31 C 4.299 -4.772 31
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
RND C15 C16 SINGLE NONE 1
RND C15 C14 SINGLE NONE 2
RND C19 N22 SINGLE BEGINWEDGE 3
RND C16 N11 SINGLE NONE 4
RND C30 C31 DOUBLE NONE 5
RND C30 C29 SINGLE NONE 6
RND C14 N17 SINGLE NONE 7
RND C14 C13 SINGLE NONE 8
RND N17 C18 SINGLE NONE 9
RND C31 C26 SINGLE NONE 10
RND C18 C19 SINGLE NONE 11
RND C18 O20 DOUBLE NONE 12
RND C19 C21 SINGLE NONE 13
RND C29 C28 DOUBLE NONE 14
RND N11 C10 SINGLE NONE 15
RND N11 C12 SINGLE NONE 16
RND C10 C08 SINGLE NONE 17
RND C13 C12 SINGLE NONE 18
RND C26 C23 SINGLE NONE 19
RND C26 C27 DOUBLE NONE 20
RND C21 C23 SINGLE NONE 21
RND C09 C08 DOUBLE NONE 22
RND C09 N07 SINGLE NONE 23
RND C08 C06 SINGLE NONE 24
RND C28 C27 SINGLE NONE 25
RND C23 C25 DOUBLE NONE 26
RND C27 N24 SINGLE NONE 27
RND N07 C05 SINGLE NONE 28
RND C06 C05 SINGLE NONE 29
RND C06 C01 DOUBLE NONE 30
RND C25 N24 SINGLE NONE 31
RND C05 C04 DOUBLE NONE 32
RND C01 C02 SINGLE NONE 33
RND C04 C03 SINGLE NONE 34
RND C02 C03 DOUBLE NONE 35
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
RND MurckoScaffold S1 scaffold 'O=C(CCc1c[nH]c2ccccc12)NC1CCN(Cc2c[nH]c3ccccc23)CC1' InChI=1S/C25H28N4O/c30-25(10-9-18-15-26-23-7-3-1-5-21(18)23)28-20-11-13-29(14-12-20)17-19-16-27-24-8-4-2-6-22(19)24/h1-8,15-16,20,26-27H,9-14,17H2,(H,28,30) MMWYCSGTMACPQI-UHFFFAOYSA-N
RND amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
RND indole F2 fragment 'c1ccc2[nH]ccc2c1' InChI=1S/C8H7N/c1-2-4-8-7(3-1)5-6-9-8/h1-6,9H SIKJAQJRHWYJAI-UHFFFAOYSA-N
RND peptide F3 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
RND phenyl F4 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
RND pyrrole F5 fragment 'c1cc[nH]c1' InChI=1S/C4H5N/c1-2-4-5-3-1/h1-5H KAESVJOAVNADME-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
RND C01 S1 1
RND C02 S1 1
RND C03 S1 1
RND C04 S1 1
RND C05 S1 1
RND C06 S1 1
RND N07 S1 1
RND C08 S1 1
RND C09 S1 1
RND C10 S1 1
RND N11 S1 1
RND C12 S1 1
RND C13 S1 1
RND C14 S1 1
RND C15 S1 1
RND C16 S1 1
RND N17 S1 1
RND C18 S1 1
RND C19 S1 1
RND O20 S1 1
RND C21 S1 1
RND C23 S1 1
RND N24 S1 1
RND C25 S1 1
RND C26 S1 1
RND C27 S1 1
RND C28 S1 1
RND C29 S1 1
RND C30 S1 1
RND C31 S1 1
RND N17 F1 1
RND C18 F1 1
RND O20 F1 1
RND C19 F1 1
RND C05 F2 1
RND C06 F2 1
RND C08 F2 1
RND C09 F2 1
RND N07 F2 1
RND C01 F2 1
RND C02 F2 1
RND C03 F2 1
RND C04 F2 1
RND C27 F2 2
RND C26 F2 2
RND C23 F2 2
RND C25 F2 2
RND N24 F2 2
RND C31 F2 2
RND C30 F2 2
RND C29 F2 2
RND C28 F2 2
RND O20 F3 1
RND C18 F3 1
RND C19 F3 1
RND N22 F3 1
RND C01 F4 1
RND C06 F4 1
RND C05 F4 1
RND C04 F4 1
RND C03 F4 1
RND C02 F4 1
RND C26 F4 2
RND C31 F4 2
RND C30 F4 2
RND C29 F4 2
RND C28 F4 2
RND C27 F4 2
RND C05 F5 1
RND C06 F5 1
RND C08 F5 1
RND C09 F5 1
RND N07 F5 1
RND C25 F5 2
RND C23 F5 2
RND C26 F5 2
RND C27 F5 2
RND N24 F5 2
#
_pdbe_chem_comp_rdkit_properties.comp_id RND
_pdbe_chem_comp_rdkit_properties.exactmw 415.237
_pdbe_chem_comp_rdkit_properties.amw 415.541
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 6
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 5
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 7
_pdbe_chem_comp_rdkit_properties.NumHBD 4
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 31
_pdbe_chem_comp_rdkit_properties.NumAtoms 60
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 6
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.320
_pdbe_chem_comp_rdkit_properties.NumRings 5
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 4
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 222.394
_pdbe_chem_comp_rdkit_properties.tpsa 89.940
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.334
_pdbe_chem_comp_rdkit_properties.CrippenMR 119.775
_pdbe_chem_comp_rdkit_properties.chi0v 15.144
_pdbe_chem_comp_rdkit_properties.chi1v 8.440
_pdbe_chem_comp_rdkit_properties.chi2v 3.850
_pdbe_chem_comp_rdkit_properties.chi3v 3.850
_pdbe_chem_comp_rdkit_properties.chi4v 2.475
_pdbe_chem_comp_rdkit_properties.chi0n 44.144
_pdbe_chem_comp_rdkit_properties.chi1n 22.676
_pdbe_chem_comp_rdkit_properties.chi2n 3.850
_pdbe_chem_comp_rdkit_properties.chi3n 3.850
_pdbe_chem_comp_rdkit_properties.chi4n 2.475
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.090
_pdbe_chem_comp_rdkit_properties.kappa1 5.448
_pdbe_chem_comp_rdkit_properties.kappa2 8.571
_pdbe_chem_comp_rdkit_properties.kappa3 4.219
_pdbe_chem_comp_rdkit_properties.Phi 1.506
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
RND UniChem ChEMBL CHEMBL4172691
RND UniChem PDBe RND
RND UniChem ZINC ZINC000098209370
RND UniChem PubChem 73167576
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
RND C01 6.215 -1.433 0.055 ETKDGv3 1
RND C02 7.193 -2.292 0.777 ETKDGv3 2
RND C03 8.143 -1.736 1.563 ETKDGv3 3
RND C04 8.223 -0.257 1.717 ETKDGv3 4
RND C05 7.333 0.479 1.050 ETKDGv3 5
RND C06 6.324 -0.112 0.213 ETKDGv3 6
RND N07 7.191 1.889 1.042 ETKDGv3 7
RND C08 5.550 1.007 -0.314 ETKDGv3 8
RND C09 6.068 2.138 0.185 ETKDGv3 9
RND C10 4.344 0.912 -1.204 ETKDGv3 10
RND N11 3.226 0.242 -0.507 ETKDGv3 11
RND C12 2.140 -0.129 -1.452 ETKDGv3 12
RND C13 1.006 0.906 -1.484 ETKDGv3 13
RND C14 0.352 1.076 -0.091 ETKDGv3 14
RND C15 1.321 0.697 1.052 ETKDGv3 15
RND C16 2.764 1.035 0.664 ETKDGv3 16
RND N17 -0.884 0.288 -0.002 ETKDGv3 17
RND C18 -2.095 0.690 -0.664 ETKDGv3 18
RND C19 -3.340 -0.151 -0.568 ETKDGv3 19
RND O20 -2.126 1.762 -1.328 ETKDGv3 20
RND C21 -3.859 -0.183 0.885 ETKDGv3 21
RND N22 -3.067 -1.495 -1.085 ETKDGv3 22
RND C23 -5.197 -0.854 0.978 ETKDGv3 23
RND N24 -6.809 -2.433 1.231 ETKDGv3 24
RND C25 -5.420 -2.120 1.335 ETKDGv3 25
RND C26 -6.488 -0.288 0.598 ETKDGv3 26
RND C27 -7.397 -1.230 0.759 ETKDGv3 27
RND C28 -8.815 -0.992 0.442 ETKDGv3 28
RND C29 -9.167 0.222 -0.019 ETKDGv3 29
RND C30 -8.138 1.289 -0.202 ETKDGv3 30
RND C31 -6.847 1.048 0.092 ETKDGv3 31
RND H1 5.445 -1.864 -0.572 ETKDGv3 32
RND H2 7.139 -3.368 0.671 ETKDGv3 33
RND H3 8.849 -2.368 2.086 ETKDGv3 34
RND H4 8.973 0.202 2.348 ETKDGv3 35
RND H5 7.759 2.593 1.564 ETKDGv3 36
RND H6 5.682 3.129 -0.016 ETKDGv3 37
RND H7 4.037 1.921 -1.563 ETKDGv3 38
RND H8 4.652 0.320 -2.094 ETKDGv3 39
RND H10 1.719 -1.109 -1.139 ETKDGv3 40
RND H11 2.521 -0.281 -2.486 ETKDGv3 41
RND H12 1.427 1.880 -1.815 ETKDGv3 42
RND H13 0.253 0.602 -2.243 ETKDGv3 43
RND H14 0.094 2.152 0.039 ETKDGv3 44
RND H15 1.269 -0.391 1.276 ETKDGv3 45
RND H16 1.042 1.247 1.977 ETKDGv3 46
RND H17 2.828 2.129 0.464 ETKDGv3 47
RND H18 3.422 0.811 1.532 ETKDGv3 48
RND H19 -0.902 -0.577 0.582 ETKDGv3 49
RND H20 -4.121 0.319 -1.209 ETKDGv3 50
RND H21 -3.966 0.858 1.261 ETKDGv3 51
RND H22 -3.133 -0.701 1.549 ETKDGv3 52
RND H23 -3.976 -1.984 -1.251 ETKDGv3 53
RND H24 -2.540 -2.052 -0.373 ETKDGv3 54
RND H26 -7.277 -3.347 1.421 ETKDGv3 55
RND H27 -4.659 -2.827 1.638 ETKDGv3 56
RND H28 -9.552 -1.772 0.576 ETKDGv3 57
RND H29 -10.201 0.429 -0.262 ETKDGv3 58
RND H30 -8.434 2.260 -0.576 ETKDGv3 59
RND H31 -6.094 1.814 -0.040 ETKDGv3 60
#