data_RNR
#
_chem_comp.id RNR
_chem_comp.name "3,6-bis(3-(3'-(R)-fluoropyrrolindino)propionamido)acridine"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C27 H31 F2 N5 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "N,N'-acridine-3,6-diylbis{3-[(3R)-3-fluoropyrrolidin-1-yl]propanamide}"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2010-07-27
_chem_comp.pdbx_modified_date 2020-06-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 495.564
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code RNR
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3NYP
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
RNR N1 N1 N 0 1 Y N N N N N 17.578 17.420 7.408 0.039 0.080 -1.042 N1 RNR 1
RNR C2 C2 C 0 1 Y N N N N N 18.087 16.925 6.183 -1.136 0.550 -0.635 C2 RNR 2
RNR C3 C3 C 0 1 Y N N N N N 19.453 17.167 5.841 -2.338 -0.062 -1.041 C3 RNR 3
RNR C4 C4 C 0 1 Y N N N N N 19.942 16.646 4.600 -3.531 0.439 -0.608 C4 RNR 4
RNR C5 C5 C 0 1 Y N N N N N 19.097 15.928 3.741 -3.597 1.556 0.235 C5 RNR 5
RNR C6 C6 C 0 1 Y N N N N N 17.750 15.687 4.076 -2.475 2.189 0.661 C6 RNR 6
RNR C7 C7 C 0 1 Y N N N N N 17.255 16.210 5.314 -1.211 1.718 0.249 C7 RNR 7
RNR C8 C8 C 0 1 Y N N N N N 15.855 15.977 5.655 -0.034 2.344 0.666 C8 RNR 8
RNR C9 C9 C 0 1 Y N N N N N 15.355 16.511 6.919 1.180 1.821 0.215 C9 RNR 9
RNR C10 C10 C 0 1 Y N N N N N 13.966 16.304 7.284 2.410 2.398 0.594 C10 RNR 10
RNR C11 C11 C 0 1 Y N N N N N 13.509 16.844 8.511 3.570 1.863 0.137 C11 RNR 11
RNR C12 C12 C 0 1 Y N N N N N 14.389 17.577 9.347 3.577 0.744 -0.706 C12 RNR 12
RNR C13 C13 C 0 1 Y N N N N N 15.769 17.774 8.991 2.419 0.142 -1.107 C13 RNR 13
RNR C14 C14 C 0 1 Y N N N N N 16.234 17.221 7.739 1.181 0.649 -0.666 C14 RNR 14
RNR N15 N15 N 0 1 N N N N N N 13.774 18.200 10.523 4.798 0.232 -1.148 N15 RNR 15
RNR C16 C16 C 0 1 N N N N N N 14.416 18.964 11.566 5.874 0.263 -0.337 C16 RNR 16
RNR O17 O17 O 0 1 N N N N N N 15.644 19.094 11.635 5.760 0.646 0.808 O17 RNR 17
RNR C18 C18 C 0 1 N N N N N N 13.507 19.540 12.651 7.220 -0.179 -0.853 C18 RNR 18
RNR C19 C19 C 0 1 N N N N N N 14.178 20.123 13.889 8.262 -0.046 0.260 C19 RNR 19
RNR N20 N20 N 0 1 N N N N N N 13.299 20.571 14.986 9.573 -0.477 -0.244 N20 RNR 20
RNR C21 C21 C 0 1 N N N N N N 12.414 19.614 15.593 10.642 -0.143 0.715 C21 RNR 21
RNR C22 C22 C 0 1 N N R N N N 11.850 20.224 16.833 11.373 -1.457 1.061 C22 RNR 22
RNR F23 F23 F 0 1 N N N N N N 10.569 20.561 16.675 12.752 -1.245 1.161 F23 RNR 23
RNR C24 C24 C 0 1 N N N N N N 12.707 21.395 17.133 11.044 -2.369 -0.150 C24 RNR 24
RNR C25 C25 C 0 1 N N N N N N 13.723 21.474 16.033 9.595 -1.935 -0.485 C25 RNR 25
RNR N26 N26 N 0 1 N N N N N N 21.308 16.969 4.068 -4.716 -0.175 -1.017 N26 RNR 26
RNR C27 C27 C 0 1 N N N N N N 22.371 17.649 4.732 -5.769 -0.236 -0.177 C27 RNR 27
RNR O28 O28 O 0 1 N N N N N N 22.390 17.848 5.948 -5.656 0.157 0.965 O28 RNR 28
RNR C29 C29 C 0 1 N N N N N N 23.563 18.055 3.880 -7.085 -0.791 -0.657 C29 RNR 29
RNR C30 C30 C 0 1 N N N N N N 24.708 18.713 4.618 -8.104 -0.747 0.484 C30 RNR 30
RNR N31 N31 N 0 1 N N N N N N 25.400 19.818 3.975 -9.387 -1.288 0.016 N31 RNR 31
RNR C32 C32 C 0 1 N N N N N N 26.412 20.592 4.627 -10.319 -1.483 1.141 C32 RNR 32
RNR C33 C33 C 0 1 N N R N N N 27.396 21.010 3.590 -11.595 -0.676 0.822 C33 RNR 33
RNR F34 F34 F 0 1 N N N N N N 27.254 22.291 3.358 -12.738 -1.383 1.211 F34 RNR 34
RNR C35 C35 C 0 1 N N N N N N 27.074 20.266 2.378 -11.540 -0.529 -0.721 C35 RNR 35
RNR C36 C36 C 0 1 N N N N N N 25.691 19.747 2.576 -10.017 -0.381 -0.967 C36 RNR 36
RNR H3 H3 H 0 1 N N N N N N 20.099 17.728 6.500 -2.315 -0.924 -1.692 H3 RNR 37
RNR H5 H5 H 0 1 N N N N N N 19.486 15.553 2.806 -4.562 1.921 0.554 H5 RNR 38
RNR H6 H6 H 0 1 N N N N N N 17.107 15.123 3.416 -2.549 3.048 1.311 H6 RNR 39
RNR H8 H8 H 0 1 N N N N N N 15.207 15.425 4.991 -0.062 3.206 1.316 H8 RNR 40
RNR H10 H10 H 0 1 N N N N N N 13.299 15.753 6.638 2.428 3.261 1.243 H10 RNR 41
RNR H11 H11 H 0 1 N N N N N N 12.482 16.696 8.812 4.509 2.309 0.430 H11 RNR 42
RNR H13 H13 H 0 1 N N N N N N 16.438 18.319 9.640 2.452 -0.719 -1.758 H13 RNR 43
RNR HN15 HN15 H 0 0 N N N N N N 12.785 18.081 10.614 4.872 -0.146 -2.038 HN15 RNR 44
RNR H18 H18 H 0 1 N N N N N N 12.929 20.353 12.187 7.162 -1.219 -1.175 H18 RNR 45
RNR H18A H18A H 0 0 N N N N N N 12.859 18.720 12.994 7.508 0.447 -1.697 H18A RNR 46
RNR H19 H19 H 0 1 N N N N N N 14.830 19.338 14.300 8.319 0.993 0.581 H19 RNR 47
RNR H19A H19A H 0 0 N N N N N N 14.752 21.001 13.559 7.973 -0.672 1.104 H19A RNR 48
RNR H21 H21 H 0 1 N N N N N N 11.601 19.361 14.897 11.340 0.561 0.262 H21 RNR 49
RNR H21A H21A H 0 0 N N N N N N 12.968 18.698 15.845 10.210 0.290 1.617 H21A RNR 50
RNR H22 H22 H 0 1 N N N N N N 11.855 19.512 17.671 10.982 -1.883 1.985 H22 RNR 51
RNR H24 H24 H 0 1 N N N N N N 12.104 22.314 17.166 11.715 -2.166 -0.985 H24 RNR 52
RNR H24A H24A H 0 0 N N N N N N 13.203 21.269 18.106 11.081 -3.421 0.132 H24A RNR 53
RNR H25 H25 H 0 1 N N N N N N 14.713 21.179 16.410 8.887 -2.439 0.173 H25 RNR 54
RNR H25A H25A H 0 0 N N N N N N 13.783 22.502 15.646 9.366 -2.151 -1.528 H25A RNR 55
RNR HN26 HN26 H 0 0 N N N N N N 21.496 16.670 3.132 -4.782 -0.559 -1.906 HN26 RNR 56
RNR H29 H29 H 0 1 N N N N N N 23.957 17.142 3.409 -7.449 -0.193 -1.493 H29 RNR 57
RNR H29A H29A H 0 0 N N N N N N 23.201 18.772 3.128 -6.948 -1.822 -0.982 H29A RNR 58
RNR H30 H30 H 0 1 N N N N N N 24.292 19.106 5.557 -7.740 -1.345 1.319 H30 RNR 59
RNR H30A H30A H 0 0 N N N N N N 25.461 17.930 4.793 -8.241 0.285 0.808 H30A RNR 60
RNR H32 H32 H 0 1 N N N N N N 25.964 21.477 5.102 -10.565 -2.540 1.240 H32 RNR 61
RNR H32A H32A H 0 0 N N N N N N 26.910 19.989 5.400 -9.870 -1.117 2.063 H32A RNR 62
RNR H33 H33 H 0 1 N N N N N N 28.428 20.815 3.916 -11.565 0.301 1.306 H33 RNR 63
RNR H35 H35 H 0 1 N N N N N N 27.121 20.921 1.495 -11.930 -1.420 -1.212 H35 RNR 64
RNR H35A H35A H 0 0 N N N N N N 27.783 19.438 2.230 -12.076 0.362 -1.048 H35A RNR 65
RNR H36 H36 H 0 1 N N N N N N 25.624 18.706 2.228 -9.703 0.648 -0.790 H36 RNR 66
RNR H36A H36A H 0 0 N N N N N N 24.973 20.357 2.009 -9.766 -0.687 -1.982 H36A RNR 67
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
RNR N1 C2 DOUB Y N 1
RNR N1 C14 SING Y N 2
RNR C2 C3 SING Y N 3
RNR C2 C7 SING Y N 4
RNR C3 C4 DOUB Y N 5
RNR C4 C5 SING Y N 6
RNR C4 N26 SING N N 7
RNR C5 C6 DOUB Y N 8
RNR C6 C7 SING Y N 9
RNR C7 C8 DOUB Y N 10
RNR C8 C9 SING Y N 11
RNR C9 C10 SING Y N 12
RNR C9 C14 DOUB Y N 13
RNR C10 C11 DOUB Y N 14
RNR C11 C12 SING Y N 15
RNR C12 C13 DOUB Y N 16
RNR C12 N15 SING N N 17
RNR C13 C14 SING Y N 18
RNR N15 C16 SING N N 19
RNR C16 O17 DOUB N N 20
RNR C16 C18 SING N N 21
RNR C18 C19 SING N N 22
RNR C19 N20 SING N N 23
RNR N20 C21 SING N N 24
RNR N20 C25 SING N N 25
RNR C21 C22 SING N N 26
RNR C22 F23 SING N N 27
RNR C22 C24 SING N N 28
RNR C24 C25 SING N N 29
RNR N26 C27 SING N N 30
RNR C27 O28 DOUB N N 31
RNR C27 C29 SING N N 32
RNR C29 C30 SING N N 33
RNR C30 N31 SING N N 34
RNR N31 C32 SING N N 35
RNR N31 C36 SING N N 36
RNR C32 C33 SING N N 37
RNR C33 F34 SING N N 38
RNR C33 C35 SING N N 39
RNR C35 C36 SING N N 40
RNR C3 H3 SING N N 41
RNR C5 H5 SING N N 42
RNR C6 H6 SING N N 43
RNR C8 H8 SING N N 44
RNR C10 H10 SING N N 45
RNR C11 H11 SING N N 46
RNR C13 H13 SING N N 47
RNR N15 HN15 SING N N 48
RNR C18 H18 SING N N 49
RNR C18 H18A SING N N 50
RNR C19 H19 SING N N 51
RNR C19 H19A SING N N 52
RNR C21 H21 SING N N 53
RNR C21 H21A SING N N 54
RNR C22 H22 SING N N 55
RNR C24 H24 SING N N 56
RNR C24 H24A SING N N 57
RNR C25 H25 SING N N 58
RNR C25 H25A SING N N 59
RNR N26 HN26 SING N N 60
RNR C29 H29 SING N N 61
RNR C29 H29A SING N N 62
RNR C30 H30 SING N N 63
RNR C30 H30A SING N N 64
RNR C32 H32 SING N N 65
RNR C32 H32A SING N N 66
RNR C33 H33 SING N N 67
RNR C35 H35 SING N N 68
RNR C35 H35A SING N N 69
RNR C36 H36 SING N N 70
RNR C36 H36A SING N N 71
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
RNR SMILES ACDLabs 12.01 O=C(Nc4cc3nc2cc(NC(=O)CCN1CCC(F)C1)ccc2cc3cc4)CCN5CCC(F)C5
RNR SMILES_CANONICAL CACTVS 3.370 F[C@@H]1CCN(CCC(=O)Nc2ccc3cc4ccc(NC(=O)CCN5CC[C@@H](F)C5)cc4nc3c2)C1
RNR SMILES CACTVS 3.370 F[CH]1CCN(CCC(=O)Nc2ccc3cc4ccc(NC(=O)CCN5CC[CH](F)C5)cc4nc3c2)C1
RNR SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 c1cc(cc2c1cc3ccc(cc3n2)NC(=O)CC[N@@]4CC[C@H](C4)F)NC(=O)CC[N@@]5CC[C@H](C5)F
RNR SMILES "OpenEye OEToolkits" 1.7.0 c1cc(cc2c1cc3ccc(cc3n2)NC(=O)CCN4CCC(C4)F)NC(=O)CCN5CCC(C5)F
RNR InChI InChI 1.03 InChI=1S/C27H31F2N5O2/c28-20-5-9-33(16-20)11-7-26(35)30-22-3-1-18-13-19-2-4-23(15-25(19)32-24(18)14-22)31-27(36)8-12-34-10-6-21(29)17-34/h1-4,13-15,20-21H,5-12,16-17H2,(H,30,35)(H,31,36)/t20-,21-/m1/s1
RNR InChIKey InChI 1.03 LWWRDCOEZPEHNJ-NHCUHLMSSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
RNR "SYSTEMATIC NAME" ACDLabs 12.01 "N,N'-acridine-3,6-diylbis{3-[(3R)-3-fluoropyrrolidin-1-yl]propanamide}"
RNR "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 3-[(1R,3R)-3-fluoropyrrolidin-1-yl]-N-[6-[3-[(1R,3R)-3-fluoropyrrolidin-1-yl]propanoylamino]acridin-3-yl]propanamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
RNR 'Create component' 2010-07-27 RCSB
RNR 'Modify aromatic_flag' 2011-06-04 RCSB
RNR 'Modify descriptor' 2011-06-04 RCSB
RNR 'Modify synonyms' 2020-06-05 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id RNR
_pdbx_chem_comp_synonyms.name "N,N'-acridine-3,6-diylbis{3-[(3R)-3-fluoropyrrolidin-1-yl]propanamide}"
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_synonyms.comp_id RNR
_pdbe_chem_comp_synonyms.name "N,N'-acridine-3,6-diylbis{3-[(3R)-3-fluoropyrrolidin-1-yl]propanamide}"
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
RNR N1 N 15.863 -0.093 1
RNR C2 C 14.564 -0.844 2
RNR C3 C 13.223 -0.041 3
RNR C4 C 11.864 -0.812 4
RNR C5 C 11.864 -2.375 5
RNR C6 C 13.223 -3.145 6
RNR C7 C 14.564 -2.343 7
RNR C8 C 15.863 -3.093 8
RNR C9 C 17.162 -2.343 9
RNR C10 C 18.503 -3.145 10
RNR C11 C 19.862 -2.375 11
RNR C12 C 19.862 -0.812 12
RNR C13 C 18.503 -0.041 13
RNR C14 C 17.162 -0.844 14
RNR N15 N 21.159 -0.057 15
RNR C16 C 22.460 -0.802 16
RNR O17 O 22.466 -2.302 17
RNR C18 C 23.757 -0.047 18
RNR C19 C 25.059 -0.792 19
RNR N20 N 26.355 -0.037 20
RNR C21 C 27.727 -0.642 21
RNR C22 C 28.727 0.476 22
RNR F23 F 30.219 0.326 23
RNR C24 C 27.972 1.773 24
RNR C25 C 26.506 1.455 25
RNR N26 N 10.568 -0.057 26
RNR C27 C 9.266 -0.802 27
RNR O28 O 9.260 -2.302 28
RNR C29 C 7.970 -0.047 29
RNR C30 C 6.668 -0.792 30
RNR N31 N 5.372 -0.037 31
RNR C32 C 5.221 1.455 32
RNR C33 C 3.755 1.773 33
RNR F34 F 3.150 3.145 34
RNR C35 C 3.000 0.476 35
RNR C36 C 3.999 -0.642 36
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
RNR N1 C2 DOUBLE NONE 1
RNR N1 C14 SINGLE NONE 2
RNR C2 C3 SINGLE NONE 3
RNR C2 C7 SINGLE NONE 4
RNR C3 C4 DOUBLE NONE 5
RNR C4 C5 SINGLE NONE 6
RNR C4 N26 SINGLE NONE 7
RNR C5 C6 DOUBLE NONE 8
RNR C6 C7 SINGLE NONE 9
RNR C7 C8 DOUBLE NONE 10
RNR C8 C9 SINGLE NONE 11
RNR C9 C10 SINGLE NONE 12
RNR C9 C14 DOUBLE NONE 13
RNR C10 C11 DOUBLE NONE 14
RNR C11 C12 SINGLE NONE 15
RNR C12 C13 DOUBLE NONE 16
RNR C12 N15 SINGLE NONE 17
RNR C13 C14 SINGLE NONE 18
RNR N15 C16 SINGLE NONE 19
RNR C16 O17 DOUBLE NONE 20
RNR C16 C18 SINGLE NONE 21
RNR C18 C19 SINGLE NONE 22
RNR C19 N20 SINGLE NONE 23
RNR N20 C21 SINGLE NONE 24
RNR N20 C25 SINGLE NONE 25
RNR C21 C22 SINGLE NONE 26
RNR C22 F23 SINGLE BEGINWEDGE 27
RNR C22 C24 SINGLE NONE 28
RNR C24 C25 SINGLE NONE 29
RNR N26 C27 SINGLE NONE 30
RNR C27 O28 DOUBLE NONE 31
RNR C27 C29 SINGLE NONE 32
RNR C29 C30 SINGLE NONE 33
RNR C30 N31 SINGLE NONE 34
RNR N31 C32 SINGLE NONE 35
RNR N31 C36 SINGLE NONE 36
RNR C32 C33 SINGLE NONE 37
RNR C33 F34 SINGLE BEGINWEDGE 38
RNR C33 C35 SINGLE NONE 39
RNR C35 C36 SINGLE NONE 40
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
RNR MurckoScaffold S1 scaffold O=C(CCN1CCCC1)Nc1ccc2cc3ccc(NC(=O)CCN4CCCC4)cc3nc2c1 InChI=1S/C27H33N5O2/c33-26(9-15-31-11-1-2-12-31)28-22-7-5-20-17-21-6-8-23(19-25(21)30-24(20)18-22)29-27(34)10-16-32-13-3-4-14-32/h5-8,17-19H,1-4,9-16H2,(H,28,33)(H,29,34) WQSTTZVZUNIDBE-UHFFFAOYSA-N
RNR acridine F1 fragment c1ccc2nc3ccccc3cc2c1 InChI=1S/C13H9N/c1-3-7-12-10(5-1)9-11-6-2-4-8-13(11)14-12/h1-9H DZBUGLKDJFMEHC-UHFFFAOYSA-N
RNR amide F2 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
RNR phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
RNR pyridine F4 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N
RNR quinoline F5 fragment c1ccc2ncccc2c1 InChI=1S/C9H7N/c1-2-6-9-8(4-1)5-3-7-10-9/h1-7H SMWDFEZZVXVKRB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
RNR N1 S1 1
RNR C2 S1 1
RNR C3 S1 1
RNR C4 S1 1
RNR C5 S1 1
RNR C6 S1 1
RNR C7 S1 1
RNR C8 S1 1
RNR C9 S1 1
RNR C10 S1 1
RNR C11 S1 1
RNR C12 S1 1
RNR C13 S1 1
RNR C14 S1 1
RNR N15 S1 1
RNR C16 S1 1
RNR O17 S1 1
RNR C18 S1 1
RNR C19 S1 1
RNR N20 S1 1
RNR C21 S1 1
RNR C22 S1 1
RNR C24 S1 1
RNR C25 S1 1
RNR N26 S1 1
RNR C27 S1 1
RNR O28 S1 1
RNR C29 S1 1
RNR C30 S1 1
RNR N31 S1 1
RNR C32 S1 1
RNR C33 S1 1
RNR C35 S1 1
RNR C36 S1 1
RNR C4 F1 1
RNR C5 F1 1
RNR C6 F1 1
RNR C7 F1 1
RNR C2 F1 1
RNR C3 F1 1
RNR N1 F1 1
RNR C14 F1 1
RNR C9 F1 1
RNR C8 F1 1
RNR C10 F1 1
RNR C11 F1 1
RNR C12 F1 1
RNR C13 F1 1
RNR N15 F2 1
RNR C16 F2 1
RNR O17 F2 1
RNR C18 F2 1
RNR N26 F2 2
RNR C27 F2 2
RNR O28 F2 2
RNR C29 F2 2
RNR C2 F3 1
RNR C3 F3 1
RNR C4 F3 1
RNR C5 F3 1
RNR C6 F3 1
RNR C7 F3 1
RNR C9 F3 2
RNR C10 F3 2
RNR C11 F3 2
RNR C12 F3 2
RNR C13 F3 2
RNR C14 F3 2
RNR C2 F4 1
RNR C7 F4 1
RNR C8 F4 1
RNR C9 F4 1
RNR C14 F4 1
RNR N1 F4 1
RNR C5 F5 1
RNR C6 F5 1
RNR C7 F5 1
RNR C2 F5 1
RNR C3 F5 1
RNR C4 F5 1
RNR N1 F5 1
RNR C14 F5 1
RNR C9 F5 1
RNR C8 F5 1
RNR C11 F5 2
RNR C10 F5 2
RNR C9 F5 2
RNR C14 F5 2
RNR C13 F5 2
RNR C12 F5 2
RNR N1 F5 2
RNR C2 F5 2
RNR C7 F5 2
RNR C8 F5 2
#
_pdbe_chem_comp_rdkit_properties.comp_id RNR
_pdbe_chem_comp_rdkit_properties.exactmw 495.245
_pdbe_chem_comp_rdkit_properties.amw 495.574
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 7
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 8
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 5
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 36
_pdbe_chem_comp_rdkit_properties.NumAtoms 67
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 9
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.444
_pdbe_chem_comp_rdkit_properties.NumRings 5
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 2
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 2
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 252.056
_pdbe_chem_comp_rdkit_properties.tpsa 77.570
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.515
_pdbe_chem_comp_rdkit_properties.CrippenMR 131.588
_pdbe_chem_comp_rdkit_properties.chi0v 17.308
_pdbe_chem_comp_rdkit_properties.chi1v 9.469
_pdbe_chem_comp_rdkit_properties.chi2v 3.983
_pdbe_chem_comp_rdkit_properties.chi3v 3.983
_pdbe_chem_comp_rdkit_properties.chi4v 2.567
_pdbe_chem_comp_rdkit_properties.chi0n 48.308
_pdbe_chem_comp_rdkit_properties.chi1n 24.864
_pdbe_chem_comp_rdkit_properties.chi2n 3.983
_pdbe_chem_comp_rdkit_properties.chi3n 3.983
_pdbe_chem_comp_rdkit_properties.chi4n 2.567
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.170
_pdbe_chem_comp_rdkit_properties.kappa1 7.229
_pdbe_chem_comp_rdkit_properties.kappa2 10.840
_pdbe_chem_comp_rdkit_properties.kappa3 6.142
_pdbe_chem_comp_rdkit_properties.Phi 2.177
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
RNR UniChem PDBe RNR
RNR UniChem ZINC ZINC000058638472
RNR UniChem PubChem 46850863
RNR UniChem Nikkaji J2.926.128H
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
RNR N1 -0.378 -0.535 -0.479 ETKDGv3 1
RNR C2 -1.323 -0.706 -1.358 ETKDGv3 2
RNR C3 -2.673 -1.120 -0.947 ETKDGv3 3
RNR C4 -3.650 -1.273 -1.859 ETKDGv3 4
RNR C5 -3.365 -1.073 -3.311 ETKDGv3 5
RNR C6 -2.157 -0.698 -3.751 ETKDGv3 6
RNR C7 -1.057 -0.481 -2.795 ETKDGv3 7
RNR C8 0.167 -0.100 -3.187 ETKDGv3 8
RNR C9 1.228 0.091 -2.174 ETKDGv3 9
RNR C10 2.586 0.520 -2.570 ETKDGv3 10
RNR C11 3.534 0.684 -1.639 ETKDGv3 11
RNR C12 3.239 0.429 -0.208 ETKDGv3 12
RNR C13 1.994 0.062 0.153 ETKDGv3 13
RNR C14 0.945 -0.126 -0.871 ETKDGv3 14
RNR N15 4.272 0.648 0.766 ETKDGv3 15
RNR C16 4.447 -0.143 1.953 ETKDGv3 16
RNR O17 3.779 -1.198 2.126 ETKDGv3 17
RNR C18 5.495 0.231 2.960 ETKDGv3 18
RNR C19 6.805 -0.522 2.704 ETKDGv3 19
RNR N20 7.384 -0.157 1.394 ETKDGv3 20
RNR C21 8.424 -1.103 0.985 ETKDGv3 21
RNR C22 9.324 -0.357 0.014 ETKDGv3 22
RNR F23 10.647 -0.732 0.182 ETKDGv3 23
RNR C24 9.127 1.116 0.337 ETKDGv3 24
RNR C25 8.044 1.155 1.407 ETKDGv3 25
RNR N26 -4.956 -1.682 -1.421 ETKDGv3 26
RNR C27 -6.178 -1.187 -1.990 ETKDGv3 27
RNR O28 -6.158 -0.272 -2.858 ETKDGv3 28
RNR C29 -7.499 -1.713 -1.512 ETKDGv3 29
RNR C30 -8.261 -0.691 -0.657 ETKDGv3 30
RNR N31 -7.663 -0.560 0.690 ETKDGv3 31
RNR C32 -8.640 -0.057 1.662 ETKDGv3 32
RNR C33 -7.849 0.671 2.727 ETKDGv3 33
RNR F34 -8.607 1.662 3.327 ETKDGv3 34
RNR C35 -6.676 1.254 1.973 ETKDGv3 35
RNR C36 -6.519 0.370 0.739 ETKDGv3 36
RNR H3 -2.879 -1.283 0.105 ETKDGv3 37
RNR H5 -4.144 -1.260 -4.039 ETKDGv3 38
RNR H6 -1.990 -0.570 -4.813 ETKDGv3 39
RNR H8 0.383 0.068 -4.235 ETKDGv3 40
RNR H10 2.817 0.704 -3.612 ETKDGv3 41
RNR H11 4.527 0.999 -1.936 ETKDGv3 42
RNR H13 1.733 -0.071 1.195 ETKDGv3 43
RNR HN15 5.006 1.356 0.539 ETKDGv3 44
RNR H18 5.669 1.328 2.941 ETKDGv3 45
RNR H18A 5.126 -0.024 3.977 ETKDGv3 46
RNR H19 7.520 -0.319 3.533 ETKDGv3 47
RNR H19A 6.585 -1.614 2.729 ETKDGv3 48
RNR H21 7.963 -1.986 0.492 ETKDGv3 49
RNR H21A 9.025 -1.444 1.860 ETKDGv3 50
RNR H22 9.010 -0.564 -1.033 ETKDGv3 51
RNR H24 8.792 1.664 -0.570 ETKDGv3 52
RNR H24A 10.066 1.580 0.713 ETKDGv3 53
RNR H25 7.309 1.956 1.182 ETKDGv3 54
RNR H25A 8.518 1.368 2.393 ETKDGv3 55
RNR HN26 -5.023 -2.280 -0.566 ETKDGv3 56
RNR H29 -8.115 -1.965 -2.403 ETKDGv3 57
RNR H29A -7.358 -2.652 -0.934 ETKDGv3 58
RNR H30 -8.333 0.292 -1.176 ETKDGv3 59
RNR H30A -9.302 -1.076 -0.565 ETKDGv3 60
RNR H32 -9.209 -0.902 2.106 ETKDGv3 61
RNR H32A -9.353 0.658 1.187 ETKDGv3 62
RNR H33 -7.491 -0.051 3.494 ETKDGv3 63
RNR H35 -5.757 1.249 2.599 ETKDGv3 64
RNR H35A -6.901 2.298 1.662 ETKDGv3 65
RNR H36 -6.441 1.012 -0.167 ETKDGv3 66
RNR H36A -5.582 -0.219 0.829 ETKDGv3 67
#