data_RP1
#
_chem_comp.id RP1
_chem_comp.name 6-(6-AMINO-PURIN-9-YL)-2-THIOXO-TETRAHYDRO-2-FURO[3,2-D][1,3,2]DIOXAPHOSPHININE-2,7-DIOL
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C10 H12 N5 O5 P S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "RP-ADENOSINE-3',5'-CYCLIC-MONOPHOSPHOROTHIOATE"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2002-12-13
_chem_comp.pdbx_modified_date 2020-06-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 345.272
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code RP1
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1NE4
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
RP1 P P P 0 1 N N R N N N 38.974 46.920 84.298 -3.849 0.110 0.375 P RP1 1
RP1 S1P S1P S 0 1 N N N N N N 38.362 48.345 83.474 -5.446 -0.826 0.593 S1P RP1 2
RP1 O2P O2P O 0 1 N N N N N N 38.784 45.593 83.667 -3.706 1.195 1.556 O2P RP1 3
RP1 "O5'" O5* O 0 1 N N N N N N 38.358 46.856 85.772 -3.871 0.869 -1.041 "O5'" RP1 4
RP1 "C5'" C5* C 0 1 N N N N N N 39.074 46.196 86.828 -2.597 1.497 -1.242 "C5'" RP1 5
RP1 "C4'" C4* C 0 1 N N R N N N 40.486 46.691 86.816 -1.537 0.411 -1.211 "C4'" RP1 6
RP1 "O4'" O4* O 0 1 N N N N N N 41.341 46.072 87.793 -0.200 0.842 -1.464 "O4'" RP1 7
RP1 "C3'" C3* C 0 1 N N S N N N 41.194 46.368 85.528 -1.455 -0.145 0.235 "C3'" RP1 8
RP1 "O3'" O3* O 0 1 N N N N N N 40.544 47.166 84.555 -2.612 -0.927 0.453 "O3'" RP1 9
RP1 "C2'" C2* C 0 1 N N R N N N 42.643 46.686 85.893 -0.130 -0.926 0.179 "C2'" RP1 10
RP1 "O2'" O2* O 0 1 N N N N N N 42.961 48.068 85.874 -0.367 -2.298 -0.143 "O2'" RP1 11
RP1 "C1'" C1* C 0 1 N N R N N N 42.683 46.205 87.350 0.652 -0.211 -0.951 "C1'" RP1 12
RP1 N9 N9 N 0 1 Y N N N N N 43.364 44.935 87.570 1.888 0.365 -0.415 N9 RP1 13
RP1 C8 C8 C 0 1 Y N N N N N 44.292 44.670 88.545 2.059 1.645 0.022 C8 RP1 14
RP1 N7 N7 N 0 1 Y N N N N N 44.757 43.448 88.507 3.282 1.815 0.431 N7 RP1 15
RP1 C5 C5 C 0 1 Y N N N N N 44.093 42.869 87.438 3.971 0.657 0.289 C5 RP1 16
RP1 C6 C6 C 0 1 Y N N N N N 44.164 41.599 86.874 5.292 0.255 0.547 C6 RP1 17
RP1 N6 N6 N 0 1 N N N N N N 44.995 40.652 87.314 6.210 1.142 1.083 N6 RP1 18
RP1 N1 N1 N 0 1 Y N N N N N 43.360 41.329 85.821 5.639 -0.997 0.269 N1 RP1 19
RP1 C2 C2 C 0 1 Y N N N N N 42.557 42.295 85.368 4.770 -1.850 -0.243 C2 RP1 20
RP1 N3 N3 N 0 1 Y N N N N N 42.415 43.537 85.806 3.524 -1.516 -0.506 N3 RP1 21
RP1 C4 C4 C 0 1 Y N N N N N 43.223 43.766 86.856 3.086 -0.286 -0.262 C4 RP1 22
RP1 HOP2 2HOP H 0 0 N N N N N N 38.743 45.694 82.723 -4.472 1.781 1.491 HOP2 RP1 23
RP1 "H5'1" 1H5* H 0 0 N N N N N N 39.053 45.107 86.678 -2.410 2.218 -0.446 "H5'1" RP1 24
RP1 "H5'2" 2H5* H 0 0 N N N N N N 38.606 46.424 87.797 -2.582 2.000 -2.209 "H5'2" RP1 25
RP1 "H4'" H4* H 0 1 N N N N N N 40.352 47.767 87.002 -1.806 -0.388 -1.901 "H4'" RP1 26
RP1 "H3'" H3* H 0 1 N N N N N N 41.174 45.352 85.108 -1.402 0.674 0.953 "H3'" RP1 27
RP1 "H2'" H2* H 0 1 N N N N N N 43.351 46.227 85.187 0.407 -0.841 1.124 "H2'" RP1 28
RP1 "HO2'" *HO2 H 0 0 N N N N N N 43.032 48.389 86.765 0.496 -2.733 -0.164 "HO2'" RP1 29
RP1 "H1'" H1* H 0 1 N N N N N N 43.263 46.954 87.909 0.886 -0.919 -1.746 "H1'" RP1 30
RP1 H8 H8 H 0 1 N N N N N N 44.609 45.401 89.274 1.292 2.405 0.027 H8 RP1 31
RP1 HN61 1HN6 H 0 0 N N N N N N 45.841 41.075 87.637 7.118 0.851 1.260 HN61 RP1 32
RP1 HN62 2HN6 H 0 0 N N N N N N 45.203 40.018 86.569 5.946 2.055 1.277 HN62 RP1 33
RP1 H2 H2 H 0 1 N N N N N N 41.936 42.026 84.526 5.094 -2.858 -0.453 H2 RP1 34
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
RP1 P S1P DOUB N N 1
RP1 P O2P SING N N 2
RP1 P "O5'" SING N N 3
RP1 P "O3'" SING N N 4
RP1 O2P HOP2 SING N N 5
RP1 "O5'" "C5'" SING N N 6
RP1 "C5'" "C4'" SING N N 7
RP1 "C5'" "H5'1" SING N N 8
RP1 "C5'" "H5'2" SING N N 9
RP1 "C4'" "O4'" SING N N 10
RP1 "C4'" "C3'" SING N N 11
RP1 "C4'" "H4'" SING N N 12
RP1 "O4'" "C1'" SING N N 13
RP1 "C3'" "O3'" SING N N 14
RP1 "C3'" "C2'" SING N N 15
RP1 "C3'" "H3'" SING N N 16
RP1 "C2'" "O2'" SING N N 17
RP1 "C2'" "C1'" SING N N 18
RP1 "C2'" "H2'" SING N N 19
RP1 "O2'" "HO2'" SING N N 20
RP1 "C1'" N9 SING N N 21
RP1 "C1'" "H1'" SING N N 22
RP1 N9 C8 SING Y N 23
RP1 N9 C4 SING Y N 24
RP1 C8 N7 DOUB Y N 25
RP1 C8 H8 SING N N 26
RP1 N7 C5 SING Y N 27
RP1 C5 C6 DOUB Y N 28
RP1 C5 C4 SING Y N 29
RP1 C6 N6 SING N N 30
RP1 C6 N1 SING Y N 31
RP1 N6 HN61 SING N N 32
RP1 N6 HN62 SING N N 33
RP1 N1 C2 DOUB Y N 34
RP1 C2 N3 SING Y N 35
RP1 C2 H2 SING N N 36
RP1 N3 C4 DOUB Y N 37
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
RP1 SMILES ACDLabs 10.04 S=P3(OCC4OC(n1c2ncnc(N)c2nc1)C(O)C4O3)O
RP1 SMILES_CANONICAL CACTVS 3.341 Nc1ncnc2n(cnc12)[C@@H]3O[C@@H]4CO[P@@](O)(=S)O[C@H]4[C@H]3O
RP1 SMILES CACTVS 3.341 Nc1ncnc2n(cnc12)[CH]3O[CH]4CO[P](O)(=S)O[CH]4[CH]3O
RP1 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@H]4[C@H](O3)CO[P@@](=S)(O4)O)O)N
RP1 SMILES "OpenEye OEToolkits" 1.5.0 c1nc(c2c(n1)n(cn2)C3C(C4C(O3)COP(=S)(O4)O)O)N
RP1 InChI InChI 1.03 InChI=1S/C10H12N5O5PS/c11-8-5-9(13-2-12-8)15(3-14-5)10-6(16)7-4(19-10)1-18-21(17,22)20-7/h2-4,6-7,10,16H,1H2,(H,17,22)(H2,11,12,13)/t4-,6-,7-,10-,21-/m1/s1
RP1 InChIKey InChI 1.03 SMPNJFHAPJOHPP-PUHOFUEYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
RP1 "SYSTEMATIC NAME" ACDLabs 10.04 "(2R,4aR,6R,7R,7aS)-6-(6-amino-9H-purin-9-yl)tetrahydro-4H-furo[3,2-d][1,3,2]dioxaphosphinine-2,7-diol 2-sulfide"
RP1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (1R,4R,6S,7R,8R)-8-(6-aminopurin-9-yl)-4-hydroxy-4-sulfanylidene-3,5,9-trioxa-4$l^{5}-phosphabicyclo[4.3.0]nonan-7-ol
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
RP1 'Create component' 2002-12-13 RCSB
RP1 'Modify descriptor' 2011-06-04 RCSB
RP1 'Modify synonyms' 2020-06-05 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id RP1
_pdbx_chem_comp_synonyms.name "RP-ADENOSINE-3',5'-CYCLIC-MONOPHOSPHOROTHIOATE"
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_drugbank_details.comp_id RP1
_pdbe_chem_comp_drugbank_details.drugbank_id DB01790
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name (Rp)-cAMPS
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number ?
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
RP1 "RP-ADENOSINE-3',5'-CYCLIC-MONOPHOSPHOROTHIOATE" wwPDB ?
RP1 "(Rp)-adenosine-3',5'-cyclic monophosphorothioate" DrugBank ?
RP1 "adenosine-3',5'-cyclic monophosphorothioate, Rp-isomer" DrugBank ?
RP1 Rp-cAMPS DrugBank ?
#
_pdbe_chem_comp_drugbank_classification.comp_id RP1
_pdbe_chem_comp_drugbank_classification.drugbank_id DB01790
_pdbe_chem_comp_drugbank_classification.parent "3',5'-cyclic purine nucleoside phosphorothioates"
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Nucleoside and nucleotide analogues'
_pdbe_chem_comp_drugbank_classification.superclass 'Nucleosides, nucleotides, and analogues'
_pdbe_chem_comp_drugbank_classification.description
"This compound belongs to the class of organic compounds known as 3',5'-cyclic purine nucleoside phosphorothioates. These are 3',5'-cyclic purine nucleoside phosphate analogues, where a phosphate oxygen has been exchanged for sulphur generating a chiral phosphorothioate. In 3',5'-cyclic nucleoside phosphorothioate, the oxygen atoms at the 3'- and 5'-positions of the ribose are part of the phosphorothioate group."
#
_pdbe_chem_comp_drugbank_targets.comp_id RP1
_pdbe_chem_comp_drugbank_targets.drugbank_id DB01790
_pdbe_chem_comp_drugbank_targets.name 'cAMP-dependent protein kinase type I-alpha regulatory subunit'
_pdbe_chem_comp_drugbank_targets.organism Humans
_pdbe_chem_comp_drugbank_targets.uniprot_id P10644
_pdbe_chem_comp_drugbank_targets.pharmacologically_active unknown
_pdbe_chem_comp_drugbank_targets.ordinal 1
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
RP1 P P 4.878 1.087 1
RP1 S1P S 5.389 2.497 2
RP1 O2P O 6.355 0.828 3
RP1 "O5'" O 4.879 -0.413 4
RP1 "C5'" C 3.580 -1.163 5
RP1 "C4'" C 2.281 -0.414 6
RP1 "O4'" O 0.855 -0.879 7
RP1 "C3'" C 2.280 1.086 8
RP1 "O3'" O 3.578 1.837 9
RP1 "C2'" C 0.853 1.548 10
RP1 "O2'" O 0.388 2.974 11
RP1 "C1'" C -0.028 0.334 12
RP1 N9 N -1.528 0.332 13
RP1 C8 C -2.411 1.545 14
RP1 N7 N -3.837 1.081 15
RP1 C5 C -3.836 -0.419 16
RP1 C6 C -4.949 -1.424 17
RP1 N6 N -6.377 -0.961 18
RP1 N1 N -4.637 -2.891 19
RP1 C2 C -3.209 -3.353 20
RP1 N3 N -2.096 -2.348 21
RP1 C4 C -2.409 -0.882 22
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
RP1 P S1P DOUBLE NONE 1
RP1 P O2P SINGLE BEGINWEDGE 2
RP1 P "O5'" SINGLE NONE 3
RP1 P "O3'" SINGLE NONE 4
RP1 "O5'" "C5'" SINGLE NONE 5
RP1 "C5'" "C4'" SINGLE NONE 6
RP1 "C4'" "O4'" SINGLE NONE 7
RP1 "C4'" "C3'" SINGLE NONE 8
RP1 "O4'" "C1'" SINGLE NONE 9
RP1 "C3'" "O3'" SINGLE NONE 10
RP1 "C3'" "C2'" SINGLE NONE 11
RP1 "C2'" "O2'" SINGLE BEGINDASH 12
RP1 "C2'" "C1'" SINGLE NONE 13
RP1 "C1'" N9 SINGLE BEGINWEDGE 14
RP1 N9 C8 SINGLE NONE 15
RP1 N9 C4 SINGLE NONE 16
RP1 C8 N7 DOUBLE NONE 17
RP1 N7 C5 SINGLE NONE 18
RP1 C5 C6 SINGLE NONE 19
RP1 C5 C4 DOUBLE NONE 20
RP1 C6 N6 SINGLE NONE 21
RP1 C6 N1 DOUBLE NONE 22
RP1 N1 C2 SINGLE NONE 23
RP1 C2 N3 DOUBLE NONE 24
RP1 N3 C4 SINGLE NONE 25
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
RP1 MurckoScaffold S1 scaffold 'S=[PH]1OC[C@H]2O[C@@H](n3cnc4cncnc43)C[C@@H]2O1' InChI=1S/C10H11N4O3PS/c19-18-15-3-8-7(17-18)1-9(16-8)14-5-13-6-2-11-4-12-10(6)14/h2,4-5,7-9,18H,1,3H2/t7-,8+,9+/m0/s1 FYSNPIJJMHZKBM-DJLDLDEBSA-N
RP1 adenine F1 fragment 'Nc1ncnc2nc[nH]c12' InChI=1S/C5H5N5/c6-4-3-5(9-1-7-3)10-2-8-4/h1-2H,(H3,6,7,8,9,10) GFFGJBXGBJISGV-UHFFFAOYSA-N
RP1 imidazole F2 fragment 'c1c[nH]cn1' InChI=1S/C3H4N2/c1-2-5-3-4-1/h1-3H,(H,4,5) RAXXELZNTBOGNW-UHFFFAOYSA-N
RP1 purine F3 fragment 'c1ncc2[nH]cnc2n1' InChI=1S/C5H4N4/c1-4-5(8-2-6-1)9-3-7-4/h1-3H,(H,6,7,8,9) KDCGOANMDULRCW-UHFFFAOYSA-N
RP1 pyrimidine F4 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
RP1 ribose F5 fragment OCC1OCC(O)C1O InChI=1S/C5H10O4/c6-1-4-5(8)3(7)2-9-4/h3-8H,1-2H2 KZVAAIRBJJYZOW-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
RP1 P S1 1
RP1 S1P S1 1
RP1 "O5'" S1 1
RP1 "C5'" S1 1
RP1 "C4'" S1 1
RP1 "O4'" S1 1
RP1 "C3'" S1 1
RP1 "O3'" S1 1
RP1 "C2'" S1 1
RP1 "C1'" S1 1
RP1 N9 S1 1
RP1 C8 S1 1
RP1 N7 S1 1
RP1 C5 S1 1
RP1 C6 S1 1
RP1 N1 S1 1
RP1 C2 S1 1
RP1 N3 S1 1
RP1 C4 S1 1
RP1 N1 F1 1
RP1 C6 F1 1
RP1 C5 F1 1
RP1 C4 F1 1
RP1 N3 F1 1
RP1 C2 F1 1
RP1 N9 F1 1
RP1 C8 F1 1
RP1 N7 F1 1
RP1 N6 F1 1
RP1 C5 F2 1
RP1 C4 F2 1
RP1 N9 F2 1
RP1 C8 F2 1
RP1 N7 F2 1
RP1 N7 F3 1
RP1 C8 F3 1
RP1 N9 F3 1
RP1 C4 F3 1
RP1 C5 F3 1
RP1 C6 F3 1
RP1 N1 F3 1
RP1 C2 F3 1
RP1 N3 F3 1
RP1 C5 F4 1
RP1 C6 F4 1
RP1 N1 F4 1
RP1 C2 F4 1
RP1 N3 F4 1
RP1 C4 F4 1
RP1 "C2'" F5 1
RP1 "C3'" F5 1
RP1 "C4'" F5 1
RP1 "O4'" F5 1
RP1 "C1'" F5 1
RP1 "C5'" F5 1
RP1 "O5'" F5 1
RP1 "O3'" F5 1
RP1 "O2'" F5 1
#
_pdbe_chem_comp_rdkit_properties.comp_id RP1
_pdbe_chem_comp_rdkit_properties.exactmw 345.030
_pdbe_chem_comp_rdkit_properties.amw 345.277
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 10
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 4
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 4
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 11
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 22
_pdbe_chem_comp_rdkit_properties.NumAtoms 34
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 12
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.500
_pdbe_chem_comp_rdkit_properties.NumRings 4
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 2
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 4
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 5
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 145.802
_pdbe_chem_comp_rdkit_properties.tpsa 137.770
_pdbe_chem_comp_rdkit_properties.CrippenClogP -1.510
_pdbe_chem_comp_rdkit_properties.CrippenMR 73.951
_pdbe_chem_comp_rdkit_properties.chi0v 11.844
_pdbe_chem_comp_rdkit_properties.chi1v 8.043
_pdbe_chem_comp_rdkit_properties.chi2v 3.839
_pdbe_chem_comp_rdkit_properties.chi3v 3.839
_pdbe_chem_comp_rdkit_properties.chi4v 2.742
_pdbe_chem_comp_rdkit_properties.chi0n 22.133
_pdbe_chem_comp_rdkit_properties.chi1n 11.198
_pdbe_chem_comp_rdkit_properties.chi2n 2.671
_pdbe_chem_comp_rdkit_properties.chi3n 2.671
_pdbe_chem_comp_rdkit_properties.chi4n 1.785
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.200
_pdbe_chem_comp_rdkit_properties.kappa1 6.362
_pdbe_chem_comp_rdkit_properties.kappa2 4.898
_pdbe_chem_comp_rdkit_properties.kappa3 2.137
_pdbe_chem_comp_rdkit_properties.Phi 1.416
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
RP1 UniChem ChEMBL CHEMBL1235719
RP1 UniChem DrugBank DB01790
RP1 UniChem PDBe RP1
RP1 UniChem 'Guide to Pharmacology' 5262
RP1 UniChem ChEBI 84622
RP1 UniChem ZINC ZINC000014806300
RP1 UniChem BRENDA 135725
RP1 UniChem BRENDA 135898
RP1 UniChem MedChemExpress HY-100530A
RP1 UniChem 'Probes And Drugs' PD047969
RP1 UniChem eMolecules 1933003
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
RP1 P 4.477 -0.229 0.506 ETKDGv3 1
RP1 S1P 5.399 -1.618 0.047 ETKDGv3 2
RP1 O2P 5.532 1.005 0.984 ETKDGv3 3
RP1 "O5'" 3.436 -0.615 1.818 ETKDGv3 4
RP1 "C5'" 2.342 -1.421 1.394 ETKDGv3 5
RP1 "C4'" 1.779 -1.075 -0.003 ETKDGv3 6
RP1 "O4'" 0.376 -1.100 -0.057 ETKDGv3 7
RP1 "C3'" 2.213 0.311 -0.421 ETKDGv3 8
RP1 "O3'" 3.559 0.317 -0.830 ETKDGv3 9
RP1 "C2'" 1.230 0.614 -1.526 ETKDGv3 10
RP1 "O2'" 1.735 0.285 -2.800 ETKDGv3 11
RP1 "C1'" 0.014 -0.266 -1.146 ETKDGv3 12
RP1 N9 -1.133 0.566 -0.773 ETKDGv3 13
RP1 C8 -1.788 1.512 -1.636 ETKDGv3 14
RP1 N7 -3.039 1.723 -1.344 ETKDGv3 15
RP1 C5 -3.282 0.869 -0.235 ETKDGv3 16
RP1 C6 -4.551 0.566 0.438 ETKDGv3 17
RP1 N6 -5.750 1.272 0.119 ETKDGv3 18
RP1 N1 -4.557 -0.379 1.341 ETKDGv3 19
RP1 C2 -3.352 -1.117 1.666 ETKDGv3 20
RP1 N3 -2.227 -0.851 1.054 ETKDGv3 21
RP1 C4 -2.209 0.194 0.073 ETKDGv3 22
RP1 HOP2 5.832 0.748 1.892 ETKDGv3 23
RP1 "H5'1" 1.531 -1.304 2.144 ETKDGv3 24
RP1 "H5'2" 2.645 -2.490 1.420 ETKDGv3 25
RP1 "H4'" 2.174 -1.828 -0.727 ETKDGv3 26
RP1 "H3'" 2.043 1.051 0.400 ETKDGv3 27
RP1 "H2'" 0.985 1.698 -1.516 ETKDGv3 28
RP1 "HO2'" 1.954 -0.683 -2.810 ETKDGv3 29
RP1 "H1'" -0.287 -0.911 -2.001 ETKDGv3 30
RP1 H8 -1.301 1.989 -2.476 ETKDGv3 31
RP1 HN61 -6.644 1.041 0.606 ETKDGv3 32
RP1 HN62 -5.747 2.027 -0.601 ETKDGv3 33
RP1 H2 -3.386 -1.899 2.411 ETKDGv3 34
#