data_RPW # _chem_comp.id RPW _chem_comp.name 2-[2-[(6-methylpyridin-2-yl)amino]-1,3-thiazol-4-yl]-~{N}-(5-methyl-1,3-thiazol-2-yl)ethanamide _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H15 N5 O S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-12-06 _chem_comp.pdbx_modified_date 2023-09-08 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 345.443 _chem_comp.one_letter_code ? _chem_comp.three_letter_code RPW _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8BUG _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal RPW N1 N1 N 0 1 Y N N N N N -64.457 23.620 -8.457 4.044 0.910 -0.476 N1 RPW 1 RPW C11 C1 C 0 1 Y N N N N N -64.827 25.980 0.734 -4.709 2.208 0.882 C11 RPW 2 RPW C12 C2 C 0 1 Y N N N N N -65.367 26.641 1.812 -6.043 2.325 0.537 C12 RPW 3 RPW O1 O1 O 0 1 N N N N N N -62.453 23.197 -4.864 1.740 0.013 -0.223 O1 RPW 4 RPW C13 C3 C 0 1 Y N N N N N -64.535 27.146 2.792 -6.621 1.317 -0.223 C13 RPW 5 RPW C15 C4 C 0 1 N N N N N N -62.198 27.495 3.684 -6.475 -0.861 -1.435 C15 RPW 6 RPW C14 C5 C 0 1 Y N N N N N -63.169 26.979 2.664 -5.853 0.236 -0.609 C14 RPW 7 RPW N3 N2 N 0 1 Y N N N N N -63.573 23.934 -2.253 -0.742 -0.459 0.823 N3 RPW 8 RPW N4 N3 N 0 1 N N N N N N -62.851 25.171 -0.387 -2.651 0.965 0.795 N4 RPW 9 RPW S1 S1 S 0 1 Y N N N N N -62.181 24.285 -7.540 6.061 -0.298 0.298 S1 RPW 10 RPW N2 N4 N 0 1 N N N N N N -64.318 23.167 -6.175 3.461 -1.176 0.517 N2 RPW 11 RPW S2 S2 S 0 1 Y N N N N N -64.382 23.030 0.035 -2.593 -1.480 -0.465 S2 RPW 12 RPW C1 C6 C 0 1 Y N N N N N -63.768 23.644 -7.351 4.365 -0.203 0.106 C1 RPW 13 RPW C10 C7 C 0 1 Y N N N N N -63.437 25.870 0.655 -3.994 1.094 0.455 C10 RPW 14 RPW C2 C8 C 0 1 Y N N N N N -63.709 24.135 -9.504 5.033 1.722 -0.798 C2 RPW 15 RPW C3 C9 C 0 1 Y N N N N N -62.463 24.548 -9.230 6.247 1.275 -0.472 C3 RPW 16 RPW C4 C10 C 0 1 N N N N N N -61.425 25.153 -10.131 7.550 1.992 -0.718 C4 RPW 17 RPW C5 C11 C 0 1 N N N N N N -63.651 22.980 -5.008 2.140 -0.997 0.315 C5 RPW 18 RPW C6 C12 C 0 1 N N N N N N -64.524 22.422 -3.914 1.161 -2.053 0.760 C6 RPW 19 RPW C7 C13 C 0 1 Y N N N N N -64.327 22.828 -2.496 -0.240 -1.612 0.421 C7 RPW 20 RPW C8 C14 C 0 1 Y N N N N N -63.510 24.143 -0.965 -1.961 -0.194 0.467 C8 RPW 21 RPW C9 C15 C 0 1 Y N N N N N -64.855 22.215 -1.404 -1.073 -2.356 -0.308 C9 RPW 22 RPW N5 N5 N 0 1 Y N N N N N -62.631 26.333 1.612 -4.582 0.151 -0.265 N5 RPW 23 RPW H10 H1 H 0 1 N N N N N N -65.461 25.557 -0.031 -4.227 2.974 1.473 H10 RPW 24 RPW H11 H2 H 0 1 N N N N N N -66.437 26.765 1.892 -6.622 3.180 0.851 H11 RPW 25 RPW H12 H3 H 0 1 N N N N N N -64.946 27.664 3.646 -7.661 1.377 -0.510 H12 RPW 26 RPW H14 H4 H 0 1 N N N N N N -61.173 27.242 3.376 -6.359 -0.630 -2.493 H14 RPW 27 RPW H13 H5 H 0 1 N N N N N N -62.297 28.588 3.765 -5.980 -1.807 -1.213 H13 RPW 28 RPW H15 H6 H 0 1 N N N N N N -62.412 27.034 4.660 -7.535 -0.941 -1.194 H15 RPW 29 RPW H9 H7 H 0 1 N N N N N N -61.940 25.427 -0.711 -2.197 1.684 1.262 H9 RPW 30 RPW H2 H8 H 0 1 N N N N N N -65.292 22.940 -6.186 3.781 -1.984 0.947 H2 RPW 31 RPW H1 H9 H 0 1 N N N N N N -64.114 24.201 -10.503 4.872 2.672 -1.287 H1 RPW 32 RPW H4 H10 H 0 1 N N N N N N -60.520 25.378 -9.548 7.786 2.622 0.140 H4 RPW 33 RPW H3 H11 H 0 1 N N N N N N -61.177 24.443 -10.933 8.345 1.260 -0.862 H3 RPW 34 RPW H5 H12 H 0 1 N N N N N N -61.818 26.081 -10.571 7.460 2.611 -1.610 H5 RPW 35 RPW H6 H13 H 0 1 N N N N N N -65.560 22.686 -4.174 1.380 -2.990 0.250 H6 RPW 36 RPW H7 H14 H 0 1 N N N N N N -64.406 21.329 -3.946 1.246 -2.197 1.837 H7 RPW 37 RPW H8 H15 H 0 1 N N N N N N -65.484 21.338 -1.435 -0.854 -3.326 -0.728 H8 RPW 38 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal RPW C4 C3 SING N N 1 RPW C2 C3 DOUB Y N 2 RPW C2 N1 SING Y N 3 RPW C3 S1 SING Y N 4 RPW N1 C1 DOUB Y N 5 RPW S1 C1 SING Y N 6 RPW C1 N2 SING N N 7 RPW N2 C5 SING N N 8 RPW C5 O1 DOUB N N 9 RPW C5 C6 SING N N 10 RPW C6 C7 SING N N 11 RPW C7 N3 SING Y N 12 RPW C7 C9 DOUB Y N 13 RPW N3 C8 DOUB Y N 14 RPW C9 S2 SING Y N 15 RPW C8 N4 SING N N 16 RPW C8 S2 SING Y N 17 RPW N4 C10 SING N N 18 RPW C10 C11 DOUB Y N 19 RPW C10 N5 SING Y N 20 RPW C11 C12 SING Y N 21 RPW N5 C14 DOUB Y N 22 RPW C12 C13 DOUB Y N 23 RPW C14 C13 SING Y N 24 RPW C14 C15 SING N N 25 RPW C11 H10 SING N N 26 RPW C12 H11 SING N N 27 RPW C13 H12 SING N N 28 RPW C15 H14 SING N N 29 RPW C15 H13 SING N N 30 RPW C15 H15 SING N N 31 RPW N4 H9 SING N N 32 RPW N2 H2 SING N N 33 RPW C2 H1 SING N N 34 RPW C4 H4 SING N N 35 RPW C4 H3 SING N N 36 RPW C4 H5 SING N N 37 RPW C6 H6 SING N N 38 RPW C6 H7 SING N N 39 RPW C9 H8 SING N N 40 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor RPW InChI InChI 1.06 InChI=1S/C15H15N5OS2/c1-9-4-3-5-12(17-9)19-15-18-11(8-22-15)6-13(21)20-14-16-7-10(2)23-14/h3-5,7-8H,6H2,1-2H3,(H,16,20,21)(H,17,18,19) RPW InChIKey InChI 1.06 QMRBCNQCRMTXBE-UHFFFAOYSA-N RPW SMILES_CANONICAL CACTVS 3.385 Cc1sc(NC(=O)Cc2csc(Nc3cccc(C)n3)n2)nc1 RPW SMILES CACTVS 3.385 Cc1sc(NC(=O)Cc2csc(Nc3cccc(C)n3)n2)nc1 RPW SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 Cc1cccc(n1)Nc2nc(cs2)CC(=O)Nc3ncc(s3)C RPW SMILES "OpenEye OEToolkits" 3.1.0.0 Cc1cccc(n1)Nc2nc(cs2)CC(=O)Nc3ncc(s3)C # _pdbx_chem_comp_identifier.comp_id RPW _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 3.1.0.0 _pdbx_chem_comp_identifier.identifier 2-[2-[(6-methylpyridin-2-yl)amino]-1,3-thiazol-4-yl]-~{N}-(5-methyl-1,3-thiazol-2-yl)ethanamide # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site RPW 'Create component' 2022-12-06 PDBE RPW 'Other modification' 2023-09-08 PDBE RPW 'Initial release' 2023-09-13 RCSB # loop_ _software.name _software.version _software.description rdkit 2023.03.3 'Core functionality.' pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.' # loop_ _pdbe_chem_comp_atom_depiction.comp_id _pdbe_chem_comp_atom_depiction.atom_id _pdbe_chem_comp_atom_depiction.element _pdbe_chem_comp_atom_depiction.model_Cartn_x _pdbe_chem_comp_atom_depiction.model_Cartn_y _pdbe_chem_comp_atom_depiction.pdbx_ordinal RPW N1 N 5.923 3.918 1 RPW C11 C 15.099 -0.739 2 RPW C12 C 16.398 0.012 3 RPW O1 O 7.893 -0.121 4 RPW C13 C 17.697 -0.739 5 RPW C15 C 18.996 -2.988 6 RPW C14 C 17.697 -2.238 7 RPW N3 N 12.344 -0.747 8 RPW N4 N 13.800 -2.988 9 RPW S1 S 5.669 1.505 10 RPW N2 N 8.165 2.463 11 RPW S2 S 11.131 -2.849 12 RPW C1 C 6.673 2.619 13 RPW C10 C 15.099 -2.238 14 RPW C2 C 4.456 3.607 15 RPW C3 C 4.299 2.115 16 RPW C4 C 3.000 1.365 17 RPW C5 C 8.775 1.092 18 RPW C6 C 10.267 0.936 19 RPW C7 C 10.877 -0.435 20 RPW C8 C 12.501 -2.238 21 RPW C9 C 10.127 -1.734 22 RPW N5 N 16.398 -2.988 23 # loop_ _pdbe_chem_comp_bond_depiction.comp_id _pdbe_chem_comp_bond_depiction.atom_id_1 _pdbe_chem_comp_bond_depiction.atom_id_2 _pdbe_chem_comp_bond_depiction.value_order _pdbe_chem_comp_bond_depiction.bond_dir _pdbe_chem_comp_bond_depiction.pdbx_ordinal RPW C4 C3 SINGLE NONE 1 RPW C2 C3 DOUBLE NONE 2 RPW C2 N1 SINGLE NONE 3 RPW C3 S1 SINGLE NONE 4 RPW N1 C1 DOUBLE NONE 5 RPW S1 C1 SINGLE NONE 6 RPW C1 N2 SINGLE NONE 7 RPW N2 C5 SINGLE NONE 8 RPW C5 O1 DOUBLE NONE 9 RPW C5 C6 SINGLE NONE 10 RPW C6 C7 SINGLE NONE 11 RPW C7 N3 SINGLE NONE 12 RPW C7 C9 DOUBLE NONE 13 RPW N3 C8 DOUBLE NONE 14 RPW C9 S2 SINGLE NONE 15 RPW C8 N4 SINGLE NONE 16 RPW C8 S2 SINGLE NONE 17 RPW N4 C10 SINGLE NONE 18 RPW C10 C11 DOUBLE NONE 19 RPW C10 N5 SINGLE NONE 20 RPW C11 C12 SINGLE NONE 21 RPW N5 C14 DOUBLE NONE 22 RPW C12 C13 DOUBLE NONE 23 RPW C14 C13 SINGLE NONE 24 RPW C14 C15 SINGLE NONE 25 # loop_ _pdbe_chem_comp_substructure.comp_id _pdbe_chem_comp_substructure.substructure_name _pdbe_chem_comp_substructure.id _pdbe_chem_comp_substructure.substructure_type _pdbe_chem_comp_substructure.substructure_smiles _pdbe_chem_comp_substructure.substructure_inchis _pdbe_chem_comp_substructure.substructure_inchikeys RPW MurckoScaffold S1 scaffold O=C(Cc1csc(Nc2ccccn2)n1)Nc1nccs1 InChI=1S/C13H11N5OS2/c19-11(18-12-15-5-6-20-12)7-9-8-21-13(16-9)17-10-3-1-2-4-14-10/h1-6,8H,7H2,(H,14,16,17)(H,15,18,19) YTURMXBHADYLBV-UHFFFAOYSA-N RPW amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N RPW pyridine F2 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N RPW thiazole F3 fragment c1cscn1 InChI=1S/C3H3NS/c1-2-5-3-4-1/h1-3H FZWLAAWBMGSTSO-UHFFFAOYSA-N # loop_ _pdbe_chem_comp_substructure_mapping.comp_id _pdbe_chem_comp_substructure_mapping.atom_id _pdbe_chem_comp_substructure_mapping.substructure_id _pdbe_chem_comp_substructure_mapping.substructure_ordinal RPW N1 S1 1 RPW C11 S1 1 RPW C12 S1 1 RPW O1 S1 1 RPW C13 S1 1 RPW C14 S1 1 RPW N3 S1 1 RPW N4 S1 1 RPW S1 S1 1 RPW N2 S1 1 RPW S2 S1 1 RPW C1 S1 1 RPW C10 S1 1 RPW C2 S1 1 RPW C3 S1 1 RPW C5 S1 1 RPW C6 S1 1 RPW C7 S1 1 RPW C8 S1 1 RPW C9 S1 1 RPW N5 S1 1 RPW N2 F1 1 RPW C5 F1 1 RPW O1 F1 1 RPW C6 F1 1 RPW C14 F2 1 RPW C13 F2 1 RPW C12 F2 1 RPW C11 F2 1 RPW C10 F2 1 RPW N5 F2 1 RPW C3 F3 1 RPW C2 F3 1 RPW N1 F3 1 RPW C1 F3 1 RPW S1 F3 1 RPW C9 F3 2 RPW C7 F3 2 RPW N3 F3 2 RPW C8 F3 2 RPW S2 F3 2 # _pdbe_chem_comp_rdkit_properties.comp_id RPW _pdbe_chem_comp_rdkit_properties.exactmw 345.072 _pdbe_chem_comp_rdkit_properties.amw 345.453 _pdbe_chem_comp_rdkit_properties.lipinskiHBA 6 _pdbe_chem_comp_rdkit_properties.lipinskiHBD 2 _pdbe_chem_comp_rdkit_properties.NumRotatableBonds 7 _pdbe_chem_comp_rdkit_properties.NumHBD 2 _pdbe_chem_comp_rdkit_properties.NumHBA 7 _pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 23 _pdbe_chem_comp_rdkit_properties.NumAtoms 38 _pdbe_chem_comp_rdkit_properties.NumHeteroatoms 8 _pdbe_chem_comp_rdkit_properties.NumAmideBonds 1 _pdbe_chem_comp_rdkit_properties.FractionCSP3 0.200 _pdbe_chem_comp_rdkit_properties.NumRings 3 _pdbe_chem_comp_rdkit_properties.NumAromaticRings 3 _pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0 _pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0 _pdbe_chem_comp_rdkit_properties.NumHeterocycles 3 _pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 3 _pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0 _pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0 _pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0 _pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0 _pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0 _pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0 _pdbe_chem_comp_rdkit_properties.labuteASA 162.397 _pdbe_chem_comp_rdkit_properties.tpsa 79.800 _pdbe_chem_comp_rdkit_properties.CrippenClogP 2.230 _pdbe_chem_comp_rdkit_properties.CrippenMR 90.285 _pdbe_chem_comp_rdkit_properties.chi0v 12.594 _pdbe_chem_comp_rdkit_properties.chi1v 7.390 _pdbe_chem_comp_rdkit_properties.chi2v 3.411 _pdbe_chem_comp_rdkit_properties.chi3v 3.411 _pdbe_chem_comp_rdkit_properties.chi4v 2.335 _pdbe_chem_comp_rdkit_properties.chi0n 25.961 _pdbe_chem_comp_rdkit_properties.chi1n 13.151 _pdbe_chem_comp_rdkit_properties.chi2n 2.090 _pdbe_chem_comp_rdkit_properties.chi3n 2.090 _pdbe_chem_comp_rdkit_properties.chi4n 1.288 _pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.320 _pdbe_chem_comp_rdkit_properties.kappa1 5.641 _pdbe_chem_comp_rdkit_properties.kappa2 6.842 _pdbe_chem_comp_rdkit_properties.kappa3 4.333 _pdbe_chem_comp_rdkit_properties.Phi 1.678 # loop_ _pdbe_chem_comp_external_mappings.comp_id _pdbe_chem_comp_external_mappings.source _pdbe_chem_comp_external_mappings.resource _pdbe_chem_comp_external_mappings.resource_id RPW UniChem ChEMBL CHEMBL5175040 RPW UniChem PDBe RPW RPW UniChem ZINC ZINC000049029609 RPW UniChem eMolecules 32183390 RPW UniChem 'Probes And Drugs' PD167164 RPW UniChem SureChEMBL SCHEMBL24101439 RPW UniChem PubChem 49677967 RPW UniChem Mcule MCULE-2723925809 # loop_ _pdbe_chem_comp_rdkit_conformer.comp_id _pdbe_chem_comp_rdkit_conformer.atom_id _pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit _pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit _pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit _pdbe_chem_comp_rdkit_conformer.rdkit_method _pdbe_chem_comp_rdkit_conformer.rdkit_ordinal RPW N1 -4.963 -1.800 -0.348 ETKDGv3 1 RPW C11 4.384 1.885 1.543 ETKDGv3 2 RPW C12 5.685 1.414 2.057 ETKDGv3 3 RPW O1 -2.991 1.816 -1.180 ETKDGv3 4 RPW C13 6.212 0.277 1.592 ETKDGv3 5 RPW C15 6.033 -1.779 0.046 ETKDGv3 6 RPW C14 5.481 -0.489 0.560 ETKDGv3 7 RPW N3 0.552 1.352 -1.288 ETKDGv3 8 RPW N4 2.471 1.620 0.104 ETKDGv3 9 RPW S1 -5.148 0.651 0.426 ETKDGv3 10 RPW N2 -3.319 -0.491 -1.478 ETKDGv3 11 RPW S2 1.668 -0.936 -0.935 ETKDGv3 12 RPW C1 -4.407 -0.647 -0.556 ETKDGv3 13 RPW C10 3.730 1.158 0.621 ETKDGv3 14 RPW C2 -6.029 -1.745 0.612 ETKDGv3 15 RPW C3 -6.281 -0.536 1.112 ETKDGv3 16 RPW C4 -7.287 -0.240 2.175 ETKDGv3 17 RPW C5 -2.649 0.750 -1.757 ETKDGv3 18 RPW C6 -1.495 0.775 -2.712 ETKDGv3 19 RPW C7 -0.236 0.384 -2.001 ETKDGv3 20 RPW C8 1.582 0.832 -0.700 ETKDGv3 21 RPW C9 0.190 -0.879 -1.922 ETKDGv3 22 RPW N5 4.326 -0.061 0.135 ETKDGv3 23 RPW H10 3.967 2.810 1.920 ETKDGv3 24 RPW H11 6.208 1.989 2.809 ETKDGv3 25 RPW H12 7.164 -0.075 1.967 ETKDGv3 26 RPW H14 5.528 -2.072 -0.899 ETKDGv3 27 RPW H13 5.876 -2.576 0.803 ETKDGv3 28 RPW H15 7.121 -1.674 -0.152 ETKDGv3 29 RPW H9 2.177 2.601 0.315 ETKDGv3 30 RPW H2 -2.987 -1.347 -1.977 ETKDGv3 31 RPW H1 -6.575 -2.630 0.911 ETKDGv3 32 RPW H4 -8.215 -0.823 1.998 ETKDGv3 33 RPW H3 -6.867 -0.509 3.167 ETKDGv3 34 RPW H5 -7.536 0.841 2.167 ETKDGv3 35 RPW H6 -1.376 1.797 -3.132 ETKDGv3 36 RPW H7 -1.693 0.086 -3.562 ETKDGv3 37 RPW H8 -0.299 -1.731 -2.375 ETKDGv3 38 #