data_RQT
#
_chem_comp.id RQT
_chem_comp.name '~{N}-[3-(1~{H}-pyrrolo[2,3-b]pyridin-3-yl)phenyl]propanamide'
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula 'C16 H15 N3 O'
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2020-10-20
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 265.310
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code RQT
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7APG
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
RQT C7 C1 C 0 1 Y N N N N N -41.965 -13.120 -49.392 4.221 -0.289 1.726 C7 RQT 1
RQT C9 C2 C 0 1 Y N N N N N -40.349 -15.084 -48.527 3.338 1.014 -0.515 C9 RQT 2
RQT N1 N1 N 0 1 Y N N N N N -40.124 -14.640 -49.765 4.523 1.301 0.009 N1 RQT 3
RQT C2 C3 C 0 1 Y N N N N N -41.085 -15.163 -43.889 -1.159 -0.366 -0.453 C2 RQT 4
RQT N2 N2 N 0 1 Y N N N N N -39.569 -15.985 -47.860 2.654 1.498 -1.606 N2 RQT 5
RQT C10 C4 C 0 1 Y N N N N N -40.028 -16.092 -46.575 1.442 0.877 -1.719 C10 RQT 6
RQT C4 C5 C 0 1 Y N N N N N -41.104 -15.270 -46.384 1.295 -0.024 -0.717 C4 RQT 7
RQT C6 C6 C 0 1 Y N N N N N -42.168 -13.612 -48.111 2.973 -0.621 1.232 C6 RQT 8
RQT O O1 O 0 1 N N N N N N -42.487 -14.210 -39.956 -2.828 1.206 0.760 O RQT 9
RQT C C7 C 0 1 N N N N N N -41.461 -14.832 -40.202 -3.746 0.586 0.266 C RQT 10
RQT C14 C8 C 0 1 N N N N N N -40.571 -15.385 -39.121 -5.117 1.208 0.184 C14 RQT 11
RQT C15 C9 C 0 1 N N N N N N -39.189 -14.705 -39.071 -5.077 2.613 0.788 C15 RQT 12
RQT N N3 N 0 1 N N N N N N -41.002 -15.064 -41.451 -3.541 -0.659 -0.208 N RQT 13
RQT C1 C10 C 0 1 Y N N N N N -41.729 -14.994 -42.666 -2.249 -1.194 -0.232 C1 RQT 14
RQT C13 C11 C 0 1 Y N N N N N -43.091 -14.714 -42.639 -2.057 -2.556 -0.036 C13 RQT 15
RQT C12 C12 C 0 1 Y N N N N N -43.798 -14.608 -43.826 -0.782 -3.089 -0.059 C12 RQT 16
RQT C11 C13 C 0 1 Y N N N N N -43.153 -14.766 -45.042 0.309 -2.271 -0.278 C11 RQT 17
RQT C3 C14 C 0 1 Y N N N N N -41.793 -15.050 -45.085 0.125 -0.904 -0.482 C3 RQT 18
RQT C5 C15 C 0 1 Y N N N N N -41.341 -14.629 -47.652 2.522 0.042 0.090 C5 RQT 19
RQT C8 C16 C 0 1 Y N N N N N -40.941 -13.654 -50.170 4.971 0.684 1.082 C8 RQT 20
RQT H1 H1 H 0 1 N N N N N N -42.593 -12.333 -49.781 4.607 -0.779 2.608 H1 RQT 21
RQT H2 H2 H 0 1 N N N N N N -40.028 -15.384 -43.911 -1.306 0.693 -0.606 H2 RQT 22
RQT H3 H3 H 0 1 N N N N N N -38.792 -16.483 -48.246 2.984 2.182 -2.208 H3 RQT 23
RQT H4 H4 H 0 1 N N N N N N -39.601 -16.734 -45.819 0.713 1.074 -2.490 H4 RQT 24
RQT H5 H5 H 0 1 N N N N N N -42.952 -13.213 -47.484 2.366 -1.372 1.715 H5 RQT 25
RQT H6 H6 H 0 1 N N N N N N -41.068 -15.241 -38.150 -5.425 1.269 -0.860 H6 RQT 26
RQT H7 H7 H 0 1 N N N N N N -40.426 -16.460 -39.302 -5.828 0.595 0.737 H7 RQT 27
RQT H8 H8 H 0 1 N N N N N N -38.589 -15.151 -38.264 -4.365 3.226 0.234 H8 RQT 28
RQT H9 H9 H 0 1 N N N N N N -38.675 -14.849 -40.033 -6.068 3.063 0.728 H9 RQT 29
RQT H10 H10 H 0 1 N N N N N N -39.317 -13.629 -38.881 -4.768 2.551 1.831 H10 RQT 30
RQT H11 H11 H 0 1 N N N N N N -40.037 -15.314 -41.528 -4.290 -1.184 -0.532 H11 RQT 31
RQT H12 H12 H 0 1 N N N N N N -43.597 -14.579 -41.694 -2.906 -3.201 0.136 H12 RQT 32
RQT H13 H13 H 0 1 N N N N N N -44.858 -14.401 -43.803 -0.638 -4.148 0.095 H13 RQT 33
RQT H14 H14 H 0 1 N N N N N N -43.710 -14.668 -45.962 1.304 -2.691 -0.296 H14 RQT 34
RQT H15 H15 H 0 1 N N N N N N -40.795 -13.250 -51.161 5.941 0.949 1.476 H15 RQT 35
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
RQT C8 N1 DOUB Y N 1
RQT C8 C7 SING Y N 2
RQT N1 C9 SING Y N 3
RQT C7 C6 DOUB Y N 4
RQT C9 N2 SING Y N 5
RQT C9 C5 DOUB Y N 6
RQT C6 C5 SING Y N 7
RQT N2 C10 SING Y N 8
RQT C5 C4 SING Y N 9
RQT C10 C4 DOUB Y N 10
RQT C4 C3 SING N N 11
RQT C3 C11 DOUB Y N 12
RQT C3 C2 SING Y N 13
RQT C11 C12 SING Y N 14
RQT C2 C1 DOUB Y N 15
RQT C12 C13 DOUB Y N 16
RQT C1 C13 SING Y N 17
RQT C1 N SING N N 18
RQT N C SING N N 19
RQT C O DOUB N N 20
RQT C C14 SING N N 21
RQT C14 C15 SING N N 22
RQT C7 H1 SING N N 23
RQT C2 H2 SING N N 24
RQT N2 H3 SING N N 25
RQT C10 H4 SING N N 26
RQT C6 H5 SING N N 27
RQT C14 H6 SING N N 28
RQT C14 H7 SING N N 29
RQT C15 H8 SING N N 30
RQT C15 H9 SING N N 31
RQT C15 H10 SING N N 32
RQT N H11 SING N N 33
RQT C13 H12 SING N N 34
RQT C12 H13 SING N N 35
RQT C11 H14 SING N N 36
RQT C8 H15 SING N N 37
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
RQT InChI InChI 1.03 'InChI=1S/C16H15N3O/c1-2-15(20)19-12-6-3-5-11(9-12)14-10-18-16-13(14)7-4-8-17-16/h3-10H,2H2,1H3,(H,17,18)(H,19,20)'
RQT InChIKey InChI 1.03 CXHYISUBNJBKTE-UHFFFAOYSA-N
RQT SMILES_CANONICAL CACTVS 3.385 'CCC(=O)Nc1cccc(c1)c2c[nH]c3ncccc23'
RQT SMILES CACTVS 3.385 'CCC(=O)Nc1cccc(c1)c2c[nH]c3ncccc23'
RQT SMILES_CANONICAL 'OpenEye OEToolkits' 2.0.7 'CCC(=O)Nc1cccc(c1)c2c[nH]c3c2cccn3'
RQT SMILES 'OpenEye OEToolkits' 2.0.7 'CCC(=O)Nc1cccc(c1)c2c[nH]c3c2cccn3'
#
_pdbx_chem_comp_identifier.comp_id RQT
_pdbx_chem_comp_identifier.type 'SYSTEMATIC NAME'
_pdbx_chem_comp_identifier.program 'OpenEye OEToolkits'
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier '~{N}-[3-(1~{H}-pyrrolo[2,3-b]pyridin-3-yl)phenyl]propanamide'
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
RQT 'Create component' 2020-10-20 PDBE
RQT 'Initial release' 2020-12-02 RCSB
RQT 'Modify PCM' 2024-09-27 PDBE
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id RQT
_pdbx_chem_comp_pcm.modified_residue_id CYS
_pdbx_chem_comp_pcm.type None
_pdbx_chem_comp_pcm.category 'Covalent chemical modification'
_pdbx_chem_comp_pcm.position 'Amino-acid side chain'
_pdbx_chem_comp_pcm.polypeptide_position 'Any position'
_pdbx_chem_comp_pcm.comp_id_linking_atom C15
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.09.6 'Core functionality.'
pdbeccdutils 0.8.6 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
RQT C7 C 3.000 -3.334 1
RQT C9 C 5.598 -4.834 2
RQT N1 N 4.299 -5.584 3
RQT C2 C 6.482 -0.335 4
RQT N2 N 7.018 -5.291 5
RQT C10 C 7.893 -4.084 6
RQT C4 C 7.018 -2.877 7
RQT C6 C 4.299 -2.584 8
RQT O O 7.880 3.942 9
RQT C C 6.412 3.633 10
RQT C14 C 5.410 4.750 11
RQT C15 C 5.876 6.175 12
RQT N N 5.946 2.207 13
RQT C1 C 6.948 1.091 14
RQT C13 C 8.415 1.400 15
RQT C12 C 9.417 0.284 16
RQT C11 C 8.951 -1.142 17
RQT C3 C 7.483 -1.451 18
RQT C5 C 5.598 -3.334 19
RQT C8 C 3.000 -4.834 20
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
RQT C8 N1 SINGLE NONE 1
RQT C8 C7 DOUBLE NONE 2
RQT N1 C9 DOUBLE NONE 3
RQT C7 C6 SINGLE NONE 4
RQT C9 N2 SINGLE NONE 5
RQT C9 C5 SINGLE NONE 6
RQT C6 C5 DOUBLE NONE 7
RQT N2 C10 SINGLE NONE 8
RQT C5 C4 SINGLE NONE 9
RQT C10 C4 DOUBLE NONE 10
RQT C4 C3 SINGLE NONE 11
RQT C3 C11 SINGLE NONE 12
RQT C3 C2 DOUBLE NONE 13
RQT C11 C12 DOUBLE NONE 14
RQT C2 C1 SINGLE NONE 15
RQT C12 C13 SINGLE NONE 16
RQT C1 C13 DOUBLE NONE 17
RQT C1 N SINGLE NONE 18
RQT N C SINGLE NONE 19
RQT C O DOUBLE NONE 20
RQT C C14 SINGLE NONE 21
RQT C14 C15 SINGLE NONE 22
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
RQT MurckoScaffold S1 scaffold 'c1ccc(-c2c[nH]c3ncccc23)cc1' InChI=1S/C13H10N2/c1-2-5-10(6-3-1)12-9-15-13-11(12)7-4-8-14-13/h1-9H,(H,14,15) BUUJJRZHZGUPPQ-UHFFFAOYSA-N
RQT amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
RQT phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
RQT pyridine F3 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N
RQT pyrrole F4 fragment 'c1cc[nH]c1' InChI=1S/C4H5N/c1-2-4-5-3-1/h1-5H KAESVJOAVNADME-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
RQT C7 S1 1
RQT C9 S1 1
RQT N1 S1 1
RQT C2 S1 1
RQT N2 S1 1
RQT C10 S1 1
RQT C4 S1 1
RQT C6 S1 1
RQT C1 S1 1
RQT C13 S1 1
RQT C12 S1 1
RQT C11 S1 1
RQT C3 S1 1
RQT C5 S1 1
RQT C8 S1 1
RQT N F1 1
RQT C F1 1
RQT O F1 1
RQT C14 F1 1
RQT C2 F2 1
RQT C3 F2 1
RQT C11 F2 1
RQT C12 F2 1
RQT C13 F2 1
RQT C1 F2 1
RQT C9 F3 1
RQT C5 F3 1
RQT C6 F3 1
RQT C7 F3 1
RQT C8 F3 1
RQT N1 F3 1
RQT C9 F4 1
RQT C5 F4 1
RQT C4 F4 1
RQT C10 F4 1
RQT N2 F4 1
#
_pdbe_chem_comp_rdkit_properties.comp_id RQT
_pdbe_chem_comp_rdkit_properties.exactmw 265.122
_pdbe_chem_comp_rdkit_properties.amw 265.316
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 4
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 2
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 20
_pdbe_chem_comp_rdkit_properties.NumAtoms 35
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 4
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.125
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 137.596
_pdbe_chem_comp_rdkit_properties.tpsa 57.780
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.389
_pdbe_chem_comp_rdkit_properties.CrippenMR 76.098
_pdbe_chem_comp_rdkit_properties.chi0v 9.750
_pdbe_chem_comp_rdkit_properties.chi1v 5.296
_pdbe_chem_comp_rdkit_properties.chi2v 2.335
_pdbe_chem_comp_rdkit_properties.chi3v 2.335
_pdbe_chem_comp_rdkit_properties.chi4v 1.528
_pdbe_chem_comp_rdkit_properties.chi0n 24.750
_pdbe_chem_comp_rdkit_properties.chi1n 12.690
_pdbe_chem_comp_rdkit_properties.chi2n 2.335
_pdbe_chem_comp_rdkit_properties.chi3n 2.335
_pdbe_chem_comp_rdkit_properties.chi4n 1.528
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.620
_pdbe_chem_comp_rdkit_properties.kappa1 3.945
_pdbe_chem_comp_rdkit_properties.kappa2 5.168
_pdbe_chem_comp_rdkit_properties.kappa3 2.276
_pdbe_chem_comp_rdkit_properties.Phi 1.020
#
_pdbe_chem_comp_external_mappings.comp_id RQT
_pdbe_chem_comp_external_mappings.source UniChem
_pdbe_chem_comp_external_mappings.resource PubChem
_pdbe_chem_comp_external_mappings.resource_id 155804528
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
RQT C7 3.909 2.139 -0.718 ETKDGv3 1
RQT C9 4.274 -0.303 0.506 ETKDGv3 2
RQT N1 5.286 0.509 0.447 ETKDGv3 3
RQT C2 -0.130 -0.405 -0.119 ETKDGv3 4
RQT N2 4.287 -1.630 0.993 ETKDGv3 5
RQT C10 2.966 -2.118 0.724 ETKDGv3 6
RQT C4 2.183 -1.196 0.135 ETKDGv3 7
RQT C6 2.778 1.174 -0.675 ETKDGv3 8
RQT O -4.306 -0.733 0.429 ETKDGv3 9
RQT C -3.857 0.355 -0.022 ETKDGv3 10
RQT C14 -4.765 1.545 -0.102 ETKDGv3 11
RQT C15 -4.691 2.364 1.181 ETKDGv3 12
RQT N -2.470 0.486 -0.374 ETKDGv3 13
RQT C1 -1.553 -0.616 -0.480 ETKDGv3 14
RQT C13 -1.939 -1.812 -0.960 ETKDGv3 15
RQT C12 -0.964 -2.914 -1.082 ETKDGv3 16
RQT C11 0.314 -2.723 -0.740 ETKDGv3 17
RQT C3 0.767 -1.399 -0.243 ETKDGv3 18
RQT C5 2.989 0.015 -0.046 ETKDGv3 19
RQT C8 5.100 1.804 -0.172 ETKDGv3 20
RQT H1 3.779 3.102 -1.194 ETKDGv3 21
RQT H2 0.164 0.556 0.285 ETKDGv3 22
RQT H3 5.087 -2.150 1.417 ETKDGv3 23
RQT H4 2.642 -3.116 0.992 ETKDGv3 24
RQT H5 1.838 1.400 -1.159 ETKDGv3 25
RQT H6 -4.470 2.181 -0.964 ETKDGv3 26
RQT H7 -5.811 1.209 -0.266 ETKDGv3 27
RQT H8 -3.656 2.732 1.347 ETKDGv3 28
RQT H9 -5.005 1.747 2.051 ETKDGv3 29
RQT H10 -5.371 3.239 1.103 ETKDGv3 30
RQT H11 -2.081 1.452 -0.463 ETKDGv3 31
RQT H12 -2.955 -1.982 -1.290 ETKDGv3 32
RQT H13 -1.287 -3.876 -1.458 ETKDGv3 33
RQT H14 1.020 -3.537 -0.847 ETKDGv3 34
RQT H15 5.927 2.501 -0.209 ETKDGv3 35
#