data_RRK
#
_chem_comp.id RRK
_chem_comp.name (1R,2R)-1,2-diphenylethane-1,2-diamine
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C14 H16 N2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2015-08-21
_chem_comp.pdbx_modified_date 2017-10-06
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 212.290
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code ?
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5XF3
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
RRK C1 C1 C 0 1 N N R N N N -28.671 -52.318 36.712 -0.393 0.178 0.650 C1 RRK 1
RRK C2 C2 C 0 1 Y N N N N N -28.017 -51.033 36.297 -1.867 0.181 0.337 C2 RRK 2
RRK C3 C3 C 0 1 Y N N N N N -27.370 -50.892 35.058 -2.502 -0.997 -0.011 C3 RRK 3
RRK C4 C4 C 0 1 Y N N N N N -26.786 -49.682 34.685 -3.853 -0.994 -0.299 C4 RRK 4
RRK C5 C5 C 0 1 Y N N N N N -26.845 -48.588 35.540 -4.571 0.186 -0.239 C5 RRK 5
RRK C6 C6 C 0 1 Y N N N N N -27.490 -48.711 36.768 -3.936 1.364 0.109 C6 RRK 6
RRK C7 C7 C 0 1 Y N N N N N -28.076 -49.923 37.141 -2.585 1.360 0.402 C7 RRK 7
RRK C8 C8 C 0 1 N N R N N N -27.669 -53.332 37.298 0.407 0.184 -0.654 C8 RRK 8
RRK C9 C9 C 0 1 Y N N N N N -28.354 -54.568 37.784 1.880 0.181 -0.340 C9 RRK 9
RRK C10 C10 C 0 1 Y N N N N N -29.722 -54.553 38.043 2.513 -1.002 -0.005 C10 RRK 10
RRK C11 C11 C 0 1 Y N N N N N -30.371 -55.690 38.505 3.865 -1.004 0.283 C11 RRK 11
RRK C12 C12 C 0 1 Y N N N N N -29.656 -56.857 38.727 4.585 0.175 0.235 C12 RRK 12
RRK C13 C13 C 0 1 Y N N N N N -28.290 -56.882 38.484 3.952 1.357 -0.101 C13 RRK 13
RRK C14 C14 C 0 1 Y N N N N N -27.642 -55.744 38.020 2.601 1.359 -0.394 C14 RRK 14
RRK N1 N1 N 0 1 N N N N N N -26.590 -53.616 36.355 0.071 -1.011 -1.440 N1 RRK 15
RRK N2 N2 N 0 1 N N N N N N -29.408 -52.767 35.537 -0.059 -1.026 1.423 N2 RRK 16
RRK H1 H1 H 0 1 N N N N N N -29.397 -52.083 37.504 -0.143 1.064 1.233 H1 RRK 17
RRK H2 H2 H 0 1 N N N N N N -27.324 -51.734 34.384 -1.941 -1.919 -0.058 H2 RRK 18
RRK H3 H3 H 0 1 N N N N N N -26.287 -49.595 33.731 -4.350 -1.914 -0.572 H3 RRK 19
RRK H4 H4 H 0 1 N N N N N N -26.394 -47.649 35.254 -5.627 0.189 -0.465 H4 RRK 20
RRK H5 H5 H 0 1 N N N N N N -27.538 -47.864 37.436 -4.496 2.286 0.156 H5 RRK 21
RRK H6 H6 H 0 1 N N N N N N -28.580 -50.002 38.093 -2.090 2.279 0.678 H6 RRK 22
RRK H7 H7 H 0 1 N N N N N N -27.217 -52.849 38.177 0.159 1.077 -1.228 H7 RRK 23
RRK H8 H8 H 0 1 N N N N N N -30.285 -53.646 37.882 1.951 -1.923 0.033 H8 RRK 24
RRK H9 H9 H 0 1 N N N N N N -31.434 -55.665 38.692 4.360 -1.928 0.546 H9 RRK 25
RRK H10 H10 H 0 1 N N N N N N -30.160 -57.742 39.087 5.641 0.173 0.460 H10 RRK 26
RRK H11 H11 H 0 1 N N N N N N -27.729 -57.789 38.656 4.514 2.279 -0.139 H11 RRK 27
RRK H12 H12 H 0 1 N N N N N N -26.577 -55.770 37.840 2.107 2.282 -0.660 H12 RRK 28
RRK H13 H13 H 0 1 N N N N N N -25.957 -54.275 36.761 0.291 -1.853 -0.929 H13 RRK 29
RRK H14 H14 H 0 1 N N N N N N -26.974 -53.997 35.514 -0.899 -1.000 -1.718 H14 RRK 30
RRK H16 H16 H 0 1 N N N N N N -29.873 -53.628 35.744 -0.525 -1.022 2.318 H16 RRK 31
RRK H17 H17 H 0 1 N N N N N N -30.084 -52.075 35.283 -0.281 -1.862 0.904 H17 RRK 32
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
RRK C4 C3 DOUB Y N 1
RRK C4 C5 SING Y N 2
RRK C3 C2 SING Y N 3
RRK N2 C1 SING N N 4
RRK C5 C6 DOUB Y N 5
RRK C2 C1 SING N N 6
RRK C2 C7 DOUB Y N 7
RRK N1 C8 SING N N 8
RRK C1 C8 SING N N 9
RRK C6 C7 SING Y N 10
RRK C8 C9 SING N N 11
RRK C9 C14 DOUB Y N 12
RRK C9 C10 SING Y N 13
RRK C14 C13 SING Y N 14
RRK C10 C11 DOUB Y N 15
RRK C13 C12 DOUB Y N 16
RRK C11 C12 SING Y N 17
RRK C1 H1 SING N N 18
RRK C3 H2 SING N N 19
RRK C4 H3 SING N N 20
RRK C5 H4 SING N N 21
RRK C6 H5 SING N N 22
RRK C7 H6 SING N N 23
RRK C8 H7 SING N N 24
RRK C10 H8 SING N N 25
RRK C11 H9 SING N N 26
RRK C12 H10 SING N N 27
RRK C13 H11 SING N N 28
RRK C14 H12 SING N N 29
RRK N1 H13 SING N N 30
RRK N1 H14 SING N N 31
RRK N2 H16 SING N N 32
RRK N2 H17 SING N N 33
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
RRK SMILES ACDLabs 12.01 C(C(c1ccccc1)N)(c2ccccc2)N
RRK InChI InChI 1.03 InChI=1S/C14H16N2/c15-13(11-7-3-1-4-8-11)14(16)12-9-5-2-6-10-12/h1-10,13-14H,15-16H2/t13-,14-/m1/s1
RRK InChIKey InChI 1.03 PONXTPCRRASWKW-ZIAGYGMSSA-N
RRK SMILES_CANONICAL CACTVS 3.385 N[C@@H]([C@H](N)c1ccccc1)c2ccccc2
RRK SMILES CACTVS 3.385 N[CH]([CH](N)c1ccccc1)c2ccccc2
RRK SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 c1ccc(cc1)[C@H]([C@@H](c2ccccc2)N)N
RRK SMILES "OpenEye OEToolkits" 1.9.2 c1ccc(cc1)C(C(c2ccccc2)N)N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
RRK "SYSTEMATIC NAME" ACDLabs 12.01 (1R,2R)-1,2-diphenylethane-1,2-diamine
RRK "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 (1R,2R)-1,2-diphenylethane-1,2-diamine
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
RRK 'Create component' 2015-08-21 PDBJ
RRK 'Modify model coordinates code' 2017-10-04 PDBJ
RRK 'Initial release' 2017-10-11 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
RRK C1 C 6.404 0.375 1
RRK C2 C 6.404 1.875 2
RRK C3 C 7.702 2.625 3
RRK C4 C 7.702 4.125 4
RRK C5 C 6.404 4.875 5
RRK C6 C 5.104 4.125 6
RRK C7 C 5.104 2.625 7
RRK C8 C 5.104 -0.375 8
RRK C9 C 5.104 -1.875 9
RRK C10 C 6.404 -2.625 10
RRK C11 C 6.404 -4.125 11
RRK C12 C 5.104 -4.875 12
RRK C13 C 3.805 -4.125 13
RRK C14 C 3.805 -2.625 14
RRK N1 N 3.805 0.375 15
RRK N2 N 7.702 -0.375 16
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
RRK C4 C3 DOUBLE NONE 1
RRK C4 C5 SINGLE NONE 2
RRK C3 C2 SINGLE NONE 3
RRK C1 N2 SINGLE BEGINWEDGE 4
RRK C5 C6 DOUBLE NONE 5
RRK C2 C1 SINGLE NONE 6
RRK C2 C7 DOUBLE NONE 7
RRK C8 N1 SINGLE BEGINWEDGE 8
RRK C1 C8 SINGLE NONE 9
RRK C6 C7 SINGLE NONE 10
RRK C8 C9 SINGLE NONE 11
RRK C9 C14 SINGLE NONE 12
RRK C9 C10 DOUBLE NONE 13
RRK C14 C13 DOUBLE NONE 14
RRK C10 C11 SINGLE NONE 15
RRK C13 C12 SINGLE NONE 16
RRK C11 C12 DOUBLE NONE 17
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
RRK MurckoScaffold S1 scaffold c1ccc(CCc2ccccc2)cc1 InChI=1S/C14H14/c1-3-7-13(8-4-1)11-12-14-9-5-2-6-10-14/h1-10H,11-12H2 QWUWMCYKGHVNAV-UHFFFAOYSA-N
RRK phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
RRK C1 S1 1
RRK C2 S1 1
RRK C3 S1 1
RRK C4 S1 1
RRK C5 S1 1
RRK C6 S1 1
RRK C7 S1 1
RRK C8 S1 1
RRK C9 S1 1
RRK C10 S1 1
RRK C11 S1 1
RRK C12 S1 1
RRK C13 S1 1
RRK C14 S1 1
RRK C2 F1 1
RRK C3 F1 1
RRK C4 F1 1
RRK C5 F1 1
RRK C6 F1 1
RRK C7 F1 1
RRK C9 F1 2
RRK C14 F1 2
RRK C13 F1 2
RRK C12 F1 2
RRK C11 F1 2
RRK C10 F1 2
#
_pdbe_chem_comp_rdkit_properties.comp_id RRK
_pdbe_chem_comp_rdkit_properties.exactmw 212.131
_pdbe_chem_comp_rdkit_properties.amw 212.296
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 2
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 4
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 5
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 2
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 16
_pdbe_chem_comp_rdkit_properties.NumAtoms 32
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 2
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.143
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 2
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 118.610
_pdbe_chem_comp_rdkit_properties.tpsa 52.040
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.277
_pdbe_chem_comp_rdkit_properties.CrippenMR 66.209
_pdbe_chem_comp_rdkit_properties.chi0v 7.894
_pdbe_chem_comp_rdkit_properties.chi1v 4.197
_pdbe_chem_comp_rdkit_properties.chi2v 1.698
_pdbe_chem_comp_rdkit_properties.chi3v 1.698
_pdbe_chem_comp_rdkit_properties.chi4v 0.974
_pdbe_chem_comp_rdkit_properties.chi0n 23.894
_pdbe_chem_comp_rdkit_properties.chi1n 11.986
_pdbe_chem_comp_rdkit_properties.chi2n 1.698
_pdbe_chem_comp_rdkit_properties.chi3n 1.698
_pdbe_chem_comp_rdkit_properties.chi4n 0.974
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.640
_pdbe_chem_comp_rdkit_properties.kappa1 2.606
_pdbe_chem_comp_rdkit_properties.kappa2 4.924
_pdbe_chem_comp_rdkit_properties.kappa3 2.296
_pdbe_chem_comp_rdkit_properties.Phi 0.802
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
RRK UniChem ChEMBL CHEMBL381340
RRK UniChem PDBe RRK
RRK UniChem ZINC ZINC000091684259
RRK UniChem eMolecules 501136
RRK UniChem ChemicalBook CB4727536
RRK UniChem 'EPA CompTox Dashboard' DTXSID40369325
RRK UniChem SureChEMBL SCHEMBL851654
RRK UniChem 'PubChem TPHARMA' 16057989
RRK UniChem 'PubChem TPHARMA' 16203481
RRK UniChem PubChem 2724998
RRK UniChem ACTor 35132-20-8
RRK UniChem Nikkaji J276.440G
RRK UniChem BindingDb 50178432
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
RRK C1 -0.543 -0.501 -0.176 ETKDGv3 1
RRK C2 -1.942 -0.028 0.200 ETKDGv3 2
RRK C3 -2.587 1.115 -0.507 ETKDGv3 3
RRK C4 -3.808 1.531 -0.150 ETKDGv3 4
RRK C5 -4.528 0.862 0.950 ETKDGv3 5
RRK C6 -3.957 -0.159 1.597 ETKDGv3 6
RRK C7 -2.608 -0.621 1.211 ETKDGv3 7
RRK C8 0.543 0.516 0.268 ETKDGv3 8
RRK C9 1.940 -0.090 0.202 ETKDGv3 9
RRK C10 2.590 -0.418 1.337 ETKDGv3 10
RRK C11 3.937 -1.023 1.285 ETKDGv3 11
RRK C12 4.521 -1.261 0.106 ETKDGv3 12
RRK C13 3.819 -0.920 -1.146 ETKDGv3 13
RRK C14 2.599 -0.369 -1.105 ETKDGv3 14
RRK N1 0.466 1.775 -0.481 ETKDGv3 15
RRK N2 -0.450 -0.826 -1.604 ETKDGv3 16
RRK H1 -0.330 -1.444 0.379 ETKDGv3 17
RRK H2 -2.076 1.626 -1.311 ETKDGv3 18
RRK H3 -4.271 2.362 -0.667 ETKDGv3 19
RRK H4 -5.516 1.202 1.233 ETKDGv3 20
RRK H5 -4.482 -0.650 2.407 ETKDGv3 21
RRK H6 -2.168 -1.444 1.761 ETKDGv3 22
RRK H7 0.318 0.764 1.331 ETKDGv3 23
RRK H8 2.138 -0.247 2.307 ETKDGv3 24
RRK H9 4.449 -1.275 2.205 ETKDGv3 25
RRK H10 5.507 -1.705 0.067 ETKDGv3 26
RRK H11 4.292 -1.121 -2.098 ETKDGv3 27
RRK H12 2.102 -0.135 -2.036 ETKDGv3 28
RRK H13 1.140 2.454 -0.057 ETKDGv3 29
RRK H14 0.758 1.634 -1.473 ETKDGv3 30
RRK H16 -1.125 -1.597 -1.812 ETKDGv3 31
RRK H17 -0.730 -0.008 -2.189 ETKDGv3 32
#