data_RRX
#
_chem_comp.id RRX
_chem_comp.name (3R)-beta,beta-caroten-3-ol
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C40 H56 O"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms beta-Cryptoxanthin
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2014-05-01
_chem_comp.pdbx_modified_date 2021-03-01
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 552.872
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code RRX
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3WU2
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
RRX C1 C1 C 0 1 N N N N N N 16.763 -51.286 20.290 12.798 0.398 -1.058 C1 RRX 1
RRX C2 C2 C 0 1 N N N N N N 15.856 -51.804 19.202 14.225 -0.038 -0.719 C2 RRX 2
RRX O2 O2 O 0 1 N N N N N N 35.418 -50.550 40.217 -14.748 1.665 -0.031 O2 RRX 3
RRX C3 C3 C 0 1 N N N N N N 15.977 -53.313 18.875 14.184 -1.481 -0.202 C3 RRX 4
RRX C40 C40 C 0 1 N N N N N N 34.255 -52.824 36.729 -12.557 -1.878 -0.777 C40 RRX 5
RRX C30 C30 C 0 1 N N N N N N 33.422 -52.866 38.014 -11.901 -0.530 -1.083 C30 RRX 6
RRX C39 C39 C 0 1 N N N N N N 32.992 -54.290 38.360 -11.096 -0.640 -2.379 C39 RRX 7
RRX C29 C29 C 0 1 N N N N N N 34.282 -52.391 39.174 -12.986 0.536 -1.249 C29 RRX 8
RRX C28 C28 C 0 1 N N R N N N 34.515 -50.900 39.151 -13.612 0.812 0.123 C28 RRX 9
RRX C27 C27 C 0 1 N N N N N N 33.153 -50.243 39.395 -12.568 1.502 1.004 C27 RRX 10
RRX C26 C26 C 0 1 N N N N N N 32.069 -50.782 38.486 -11.276 0.738 0.968 C26 RRX 11
RRX C38 C38 C 0 1 N N N N N N 30.838 -49.909 38.372 -10.260 1.008 2.048 C38 RRX 12
RRX C25 C25 C 0 1 N N N N N N 32.173 -51.969 37.846 -10.982 -0.157 0.043 C25 RRX 13
RRX C24 C24 C 0 1 N N N N N N 31.091 -52.485 36.974 -9.722 -0.802 0.120 C24 RRX 14
RRX C23 C23 C 0 1 N N N N N N 30.958 -52.057 35.706 -8.579 -0.067 0.096 C23 RRX 15
RRX C22 C22 C 0 1 N N N N N N 29.862 -52.648 34.903 -7.329 -0.710 0.125 C22 RRX 16
RRX C37 C37 C 0 1 N N N N N N 29.086 -53.814 35.445 -7.257 -2.214 0.184 C37 RRX 17
RRX C21 C21 C 0 1 N N N N N N 29.610 -52.127 33.685 -6.181 0.028 0.101 C21 RRX 18
RRX C20 C20 C 0 1 N N N N N N 28.574 -52.577 32.751 -4.935 -0.613 0.130 C20 RRX 19
RRX C19 C19 C 0 1 N N N N N N 28.479 -51.905 31.603 -3.777 0.132 0.105 C19 RRX 20
RRX C18 C18 C 0 1 N N N N N N 27.499 -52.274 30.583 -2.533 -0.508 0.134 C18 RRX 21
RRX C36 C36 C 0 1 N N N N N N 26.710 -53.525 30.860 -2.460 -2.012 0.193 C36 RRX 22
RRX C17 C17 C 0 1 N N N N N N 27.377 -51.450 29.497 -1.373 0.238 0.109 C17 RRX 23
RRX C16 C16 C 0 1 N N N N N N 26.441 -51.691 28.380 -0.130 -0.402 0.139 C16 RRX 24
RRX C15 C15 C 0 1 N N N N N N 26.238 -50.809 27.362 1.030 0.344 0.114 C15 RRX 25
RRX C14 C14 C 0 1 N N N N N N 25.308 -51.236 26.304 2.273 -0.296 0.143 C14 RRX 26
RRX C13 C13 C 0 1 N N N N N N 24.819 -50.472 25.273 3.433 0.449 0.118 C13 RRX 27
RRX C35 C35 C 0 1 N N N N N N 25.124 -49.003 25.157 3.360 1.954 0.060 C35 RRX 28
RRX C12 C12 C 0 1 N N N N N N 23.830 -51.064 24.338 4.677 -0.191 0.147 C12 RRX 29
RRX C11 C11 C 0 1 N N N N N N 23.346 -50.370 23.294 5.835 0.554 0.122 C11 RRX 30
RRX C10 C10 C 0 1 N N N N N N 22.335 -51.058 22.529 7.081 -0.087 0.151 C10 RRX 31
RRX C9 C9 C 0 1 N N N N N N 21.403 -50.482 21.715 8.229 0.652 0.127 C9 RRX 32
RRX C34 C34 C 0 1 N N N N N N 21.366 -48.984 21.547 8.157 2.156 0.068 C34 RRX 33
RRX C8 C8 C 0 1 N N N N N N 20.374 -51.363 21.113 9.479 0.009 0.156 C8 RRX 34
RRX C7 C7 C 0 1 N N N N N N 19.311 -50.839 20.484 10.622 0.744 0.132 C7 RRX 35
RRX C6 C6 C 0 1 N N N N N N 18.232 -51.687 19.914 11.882 0.095 0.091 C6 RRX 36
RRX C32 C32 C 0 1 N N N N N N 16.564 -49.765 20.429 12.780 1.902 -1.337 C32 RRX 37
RRX C31 C31 C 0 1 N N N N N N 16.411 -51.830 21.660 12.320 -0.354 -2.301 C31 RRX 38
RRX C5 C5 C 0 1 N N N N N N 18.490 -52.788 19.110 12.183 -0.745 1.068 C5 RRX 39
RRX C33 C33 C 0 1 N N N N N N 19.918 -53.255 18.709 11.163 -0.964 2.156 C33 RRX 40
RRX C4 C4 C 0 1 N N N N N N 17.428 -53.690 18.507 13.478 -1.492 1.155 C4 RRX 41
RRX H1 H1 H 0 1 N N N N N N 16.079 -51.242 18.283 14.846 0.013 -1.614 H1 RRX 42
RRX H2 H2 H 0 1 N N N N N N 14.818 -51.609 19.509 14.636 0.618 0.049 H2 RRX 43
RRX H3 H3 H 0 1 N N N N N N 35.570 -49.612 40.209 -15.194 1.880 0.800 H3 RRX 44
RRX H4 H4 H 0 1 N N N N N N 15.318 -53.550 18.026 13.635 -2.106 -0.906 H4 RRX 45
RRX H5 H5 H 0 1 N N N N N N 15.667 -53.897 19.754 15.200 -1.859 -0.092 H5 RRX 46
RRX H6 H6 H 0 1 N N N N N N 35.144 -53.461 36.847 -11.786 -2.640 -0.664 H6 RRX 47
RRX H7 H7 H 0 1 N N N N N N 33.649 -53.191 35.887 -13.131 -1.801 0.146 H7 RRX 48
RRX H8 H8 H 0 1 N N N N N N 34.570 -51.789 36.530 -13.222 -2.153 -1.597 H8 RRX 49
RRX H9 H9 H 0 1 N N N N N N 32.398 -54.279 39.286 -11.773 -0.826 -3.213 H9 RRX 50
RRX H10 H10 H 0 1 N N N N N N 32.385 -54.699 37.539 -10.555 0.290 -2.552 H10 RRX 51
RRX H11 H11 H 0 1 N N N N N N 33.884 -54.917 38.504 -10.386 -1.463 -2.297 H11 RRX 52
RRX H12 H12 H 0 1 N N N N N N 33.779 -52.655 40.116 -12.542 1.452 -1.640 H12 RRX 53
RRX H13 H13 H 0 1 N N N N N N 35.255 -52.901 39.123 -13.750 0.177 -1.938 H13 RRX 54
RRX H14 H14 H 0 1 N N N N N N 34.912 -50.591 38.173 -13.916 -0.128 0.583 H14 RRX 55
RRX H15 H15 H 0 1 N N N N N N 33.249 -49.161 39.223 -12.399 2.515 0.639 H15 RRX 56
RRX H16 H16 H 0 1 N N N N N N 32.858 -50.424 40.439 -12.932 1.543 2.031 H16 RRX 57
RRX H17 H17 H 0 1 N N N N N N 30.977 -48.999 38.973 -10.677 1.708 2.772 H17 RRX 58
RRX H18 H18 H 0 1 N N N N N N 30.681 -49.632 37.319 -10.006 0.074 2.549 H18 RRX 59
RRX H19 H19 H 0 1 N N N N N N 29.961 -50.462 38.740 -9.362 1.438 1.603 H19 RRX 60
RRX H20 H20 H 0 1 N N N N N N 30.398 -53.216 37.363 -9.671 -1.878 0.199 H20 RRX 61
RRX H21 H21 H 0 1 N N N N N N 31.622 -51.314 35.290 -8.631 1.011 0.054 H21 RRX 62
RRX H22 H22 H 0 1 N N N N N N 29.459 -54.069 36.448 -7.236 -2.617 -0.829 H22 RRX 63
RRX H23 H23 H 0 1 N N N N N N 28.020 -53.548 35.507 -6.352 -2.514 0.713 H23 RRX 64
RRX H24 H24 H 0 1 N N N N N N 29.210 -54.679 34.777 -8.130 -2.600 0.710 H24 RRX 65
RRX H25 H25 H 0 1 N N N N N N 30.229 -51.301 33.368 -6.233 1.106 0.059 H25 RRX 66
RRX H26 H26 H 0 1 N N N N N N 27.923 -53.408 32.980 -4.883 -1.691 0.172 H26 RRX 67
RRX H27 H27 H 0 1 N N N N N N 29.140 -51.070 31.423 -3.829 1.210 0.063 H27 RRX 68
RRX H28 H28 H 0 1 N N N N N N 27.041 -53.964 31.813 -2.439 -2.414 -0.820 H28 RRX 69
RRX H29 H29 H 0 1 N N N N N N 25.640 -53.277 30.922 -1.556 -2.312 0.722 H29 RRX 70
RRX H30 H30 H 0 1 N N N N N N 26.872 -54.248 30.047 -3.334 -2.398 0.719 H30 RRX 71
RRX H31 H31 H 0 1 N N N N N N 28.003 -50.571 29.454 -1.425 1.316 0.068 H31 RRX 72
RRX H32 H32 H 0 1 N N N N N N 25.887 -52.618 28.370 -0.078 -1.480 0.180 H32 RRX 73
RRX H33 H33 H 0 1 N N N N N N 26.732 -49.849 27.333 0.978 1.422 0.072 H33 RRX 74
RRX H34 H34 H 0 1 N N N N N N 24.974 -52.262 26.343 2.325 -1.374 0.185 H34 RRX 75
RRX H36 H36 H 0 1 N N N N N N 25.870 -48.722 25.915 3.339 2.356 1.072 H36 RRX 76
RRX H37 H37 H 0 1 N N N N N N 25.522 -48.789 24.154 4.234 2.339 -0.467 H37 RRX 77
RRX H38 H38 H 0 1 N N N N N N 24.203 -48.424 25.317 2.456 2.253 -0.469 H38 RRX 78
RRX H39 H39 H 0 1 N N N N N N 23.491 -52.077 24.501 4.729 -1.268 0.189 H39 RRX 79
RRX H40 H40 H 0 1 N N N N N N 23.687 -49.375 23.047 5.784 1.632 0.080 H40 RRX 80
RRX H42 H42 H 0 1 N N N N N N 22.313 -52.135 22.608 7.133 -1.164 0.193 H42 RRX 81
RRX H43 H43 H 0 1 N N N N N N 22.220 -48.534 22.074 8.136 2.558 1.081 H43 RRX 82
RRX H44 H44 H 0 1 N N N N N N 21.422 -48.734 20.477 9.030 2.542 -0.458 H44 RRX 83
RRX H45 H45 H 0 1 N N N N N N 20.428 -48.591 21.967 7.252 2.456 -0.461 H45 RRX 84
RRX H46 H46 H 0 1 N N N N N N 20.481 -52.436 21.181 9.531 -1.069 0.198 H46 RRX 85
RRX H47 H47 H 0 1 N N N N N N 19.237 -49.766 20.389 10.571 1.823 0.143 H47 RRX 86
RRX H48 H48 H 0 1 N N N N N N 17.223 -49.379 21.221 11.786 2.197 -1.674 H48 RRX 87
RRX H49 H49 H 0 1 N N N N N N 16.811 -49.274 19.476 13.031 2.444 -0.426 H49 RRX 88
RRX H50 H50 H 0 1 N N N N N N 15.516 -49.555 20.689 13.510 2.137 -2.112 H50 RRX 89
RRX H51 H51 H 0 1 N N N N N N 17.104 -51.418 22.408 12.981 -0.132 -3.138 H51 RRX 90
RRX H52 H52 H 0 1 N N N N N N 15.381 -51.540 21.916 12.332 -1.426 -2.104 H52 RRX 91
RRX H53 H53 H 0 1 N N N N N N 16.492 -52.927 21.651 11.305 -0.042 -2.547 H53 RRX 92
RRX H54 H54 H 0 1 N N N N N N 20.664 -52.584 19.160 10.526 -1.808 1.893 H54 RRX 93
RRX H55 H55 H 0 1 N N N N N N 20.083 -54.281 19.070 11.675 -1.174 3.096 H55 RRX 94
RRX H56 H56 H 0 1 N N N N N N 20.017 -53.231 17.614 10.552 -0.068 2.267 H56 RRX 95
RRX H57 H57 H 0 1 N N N N N N 17.614 -54.717 18.854 13.283 -2.522 1.453 H57 RRX 96
RRX H58 H58 H 0 1 N N N N N N 17.525 -53.649 17.412 14.117 -1.017 1.899 H58 RRX 97
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
RRX C4 C3 SING N N 1
RRX C4 C5 SING N N 2
RRX C33 C5 SING N N 3
RRX C3 C2 SING N N 4
RRX C5 C6 DOUB N N 5
RRX C2 C1 SING N N 6
RRX C6 C1 SING N N 7
RRX C6 C7 SING N N 8
RRX C1 C32 SING N N 9
RRX C1 C31 SING N N 10
RRX C7 C8 DOUB N E 11
RRX C8 C9 SING N N 12
RRX C34 C9 SING N N 13
RRX C9 C10 DOUB N E 14
RRX C10 C11 SING N N 15
RRX C11 C12 DOUB N E 16
RRX C12 C13 SING N N 17
RRX C35 C13 SING N N 18
RRX C13 C14 DOUB N E 19
RRX C14 C15 SING N N 20
RRX C15 C16 DOUB N E 21
RRX C16 C17 SING N N 22
RRX C17 C18 DOUB N E 23
RRX C18 C36 SING N N 24
RRX C18 C19 SING N N 25
RRX C19 C20 DOUB N E 26
RRX C20 C21 SING N N 27
RRX C21 C22 DOUB N E 28
RRX C22 C37 SING N N 29
RRX C22 C23 SING N N 30
RRX C23 C24 DOUB N E 31
RRX C40 C30 SING N N 32
RRX C24 C25 SING N N 33
RRX C25 C30 SING N N 34
RRX C25 C26 DOUB N N 35
RRX C30 C39 SING N N 36
RRX C30 C29 SING N N 37
RRX C38 C26 SING N N 38
RRX C26 C27 SING N N 39
RRX C28 C29 SING N N 40
RRX C28 C27 SING N N 41
RRX C28 O2 SING N N 42
RRX C2 H1 SING N N 43
RRX C2 H2 SING N N 44
RRX O2 H3 SING N N 45
RRX C3 H4 SING N N 46
RRX C3 H5 SING N N 47
RRX C40 H6 SING N N 48
RRX C40 H7 SING N N 49
RRX C40 H8 SING N N 50
RRX C39 H9 SING N N 51
RRX C39 H10 SING N N 52
RRX C39 H11 SING N N 53
RRX C29 H12 SING N N 54
RRX C29 H13 SING N N 55
RRX C28 H14 SING N N 56
RRX C27 H15 SING N N 57
RRX C27 H16 SING N N 58
RRX C38 H17 SING N N 59
RRX C38 H18 SING N N 60
RRX C38 H19 SING N N 61
RRX C24 H20 SING N N 62
RRX C23 H21 SING N N 63
RRX C37 H22 SING N N 64
RRX C37 H23 SING N N 65
RRX C37 H24 SING N N 66
RRX C21 H25 SING N N 67
RRX C20 H26 SING N N 68
RRX C19 H27 SING N N 69
RRX C36 H28 SING N N 70
RRX C36 H29 SING N N 71
RRX C36 H30 SING N N 72
RRX C17 H31 SING N N 73
RRX C16 H32 SING N N 74
RRX C15 H33 SING N N 75
RRX C14 H34 SING N N 76
RRX C35 H36 SING N N 77
RRX C35 H37 SING N N 78
RRX C35 H38 SING N N 79
RRX C12 H39 SING N N 80
RRX C11 H40 SING N N 81
RRX C10 H42 SING N N 82
RRX C34 H43 SING N N 83
RRX C34 H44 SING N N 84
RRX C34 H45 SING N N 85
RRX C8 H46 SING N N 86
RRX C7 H47 SING N N 87
RRX C32 H48 SING N N 88
RRX C32 H49 SING N N 89
RRX C32 H50 SING N N 90
RRX C31 H51 SING N N 91
RRX C31 H52 SING N N 92
RRX C31 H53 SING N N 93
RRX C33 H54 SING N N 94
RRX C33 H55 SING N N 95
RRX C33 H56 SING N N 96
RRX C4 H57 SING N N 97
RRX C4 H58 SING N N 98
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
RRX SMILES ACDLabs 12.01 OC2CC(=C(\C=C\C(=C\C=C\C(=C\C=C\C=C(\C=C\C=C(\C=C\C1=C(C)CCCC1(C)C)C)C)C)C)C(C)(C)C2)C
RRX InChI InChI 1.03 InChI=1S/C40H56O/c1-30(18-13-20-32(3)23-25-37-34(5)22-15-27-39(37,7)8)16-11-12-17-31(2)19-14-21-33(4)24-26-38-35(6)28-36(41)29-40(38,9)10/h11-14,16-21,23-26,36,41H,15,22,27-29H2,1-10H3/b12-11+,18-13+,19-14+,25-23+,26-24+,30-16+,31-17+,32-20+,33-21+/t36-/m1/s1
RRX InChIKey InChI 1.03 DMASLKHVQRHNES-FKKUPVFPSA-N
RRX SMILES_CANONICAL CACTVS 3.385 CC(=C\C=C\C=C(C)\C=C\C=C(C)\C=C\C1=C(C)C[C@@H](O)CC1(C)C)/C=C/C=C(C)/C=C/C2=C(C)CCCC2(C)C
RRX SMILES CACTVS 3.385 CC(=CC=CC=C(C)C=CC=C(C)C=CC1=C(C)C[CH](O)CC1(C)C)C=CC=C(C)C=CC2=C(C)CCCC2(C)C
RRX SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 CC1=C(C(CCC1)(C)C)/C=C/C(=C/C=C/C(=C/C=C/C=C(\C)/C=C/C=C(\C)/C=C/C2=C(C[C@H](CC2(C)C)O)C)/C)/C
RRX SMILES "OpenEye OEToolkits" 1.7.6 CC1=C(C(CCC1)(C)C)C=CC(=CC=CC(=CC=CC=C(C)C=CC=C(C)C=CC2=C(CC(CC2(C)C)O)C)C)C
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
RRX "SYSTEMATIC NAME" ACDLabs 12.01 (3R)-beta,beta-caroten-3-ol
RRX "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 (1R)-3,5,5-trimethyl-4-[(1E,3E,5E,7E,9E,11E,13E,15E,17E)-3,7,12,16-tetramethyl-18-(2,6,6-trimethylcyclohexen-1-yl)octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohex-3-en-1-ol
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
RRX 'Create component' 2014-05-01 PDBJ
RRX 'Initial release' 2014-09-03 RCSB
RRX 'Modify synonyms' 2021-03-01 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id RRX
_pdbx_chem_comp_synonyms.name beta-Cryptoxanthin
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_drugbank_details.comp_id RRX
_pdbe_chem_comp_drugbank_details.drugbank_id DB15914
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name Cryptoxanthin
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number 472-70-8
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
RRX beta-Cryptoxanthin wwPDB ?
RRX beta-Cryptoxanthin DrugBank ?
RRX Cryptoxanthine DrugBank ?
RRX Cryptoxanthol DrugBank ?
RRX Kryptoxanthin DrugBank ?
RRX Neocryptoxanthin DrugBank ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
RRX C1 C 16.191 12.607 1
RRX C2 C 16.191 14.107 2
RRX O2 O 5.799 -14.393 3
RRX C3 C 17.490 14.857 4
RRX C40 C 3.000 -10.643 5
RRX C30 C 4.500 -10.643 6
RRX C39 C 3.750 -9.344 7
RRX C29 C 4.500 -12.143 8
RRX C28 C 5.799 -12.893 9
RRX C27 C 7.098 -12.143 10
RRX C26 C 7.098 -10.643 11
RRX C38 C 8.397 -9.893 12
RRX C25 C 5.799 -9.893 13
RRX C24 C 5.799 -8.393 14
RRX C23 C 7.098 -7.643 15
RRX C22 C 7.098 -6.143 16
RRX C37 C 5.799 -5.393 17
RRX C21 C 8.397 -5.393 18
RRX C20 C 8.397 -3.893 19
RRX C19 C 9.696 -3.143 20
RRX C18 C 9.696 -1.643 21
RRX C36 C 8.397 -0.892 22
RRX C17 C 10.995 -0.892 23
RRX C16 C 10.995 0.608 24
RRX C15 C 12.294 1.357 25
RRX C14 C 12.294 2.857 26
RRX C13 C 13.593 3.607 27
RRX C35 C 14.892 2.857 28
RRX C12 C 13.593 5.107 29
RRX C11 C 14.892 5.857 30
RRX C10 C 14.892 7.357 31
RRX C9 C 16.191 8.107 32
RRX C34 C 17.490 7.357 33
RRX C8 C 16.191 9.607 34
RRX C7 C 17.490 10.357 35
RRX C6 C 17.490 11.857 36
RRX C32 C 14.691 12.607 37
RRX C31 C 15.441 11.309 38
RRX C5 C 18.790 12.607 39
RRX C33 C 20.088 11.857 40
RRX C4 C 18.790 14.107 41
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
RRX C4 C3 SINGLE NONE 1
RRX C4 C5 SINGLE NONE 2
RRX C33 C5 SINGLE NONE 3
RRX C3 C2 SINGLE NONE 4
RRX C5 C6 DOUBLE NONE 5
RRX C2 C1 SINGLE NONE 6
RRX C6 C1 SINGLE NONE 7
RRX C6 C7 SINGLE ENDUPRIGHT 8
RRX C1 C32 SINGLE NONE 9
RRX C1 C31 SINGLE NONE 10
RRX C7 C8 DOUBLE NONE 11
RRX C8 C9 SINGLE ENDUPRIGHT 12
RRX C34 C9 SINGLE ENDDOWNRIGHT 13
RRX C9 C10 DOUBLE NONE 14
RRX C10 C11 SINGLE ENDUPRIGHT 15
RRX C11 C12 DOUBLE NONE 16
RRX C12 C13 SINGLE ENDUPRIGHT 17
RRX C35 C13 SINGLE ENDDOWNRIGHT 18
RRX C13 C14 DOUBLE NONE 19
RRX C14 C15 SINGLE ENDUPRIGHT 20
RRX C15 C16 DOUBLE NONE 21
RRX C16 C17 SINGLE ENDUPRIGHT 22
RRX C17 C18 DOUBLE NONE 23
RRX C18 C36 SINGLE ENDDOWNRIGHT 24
RRX C18 C19 SINGLE ENDUPRIGHT 25
RRX C19 C20 DOUBLE NONE 26
RRX C20 C21 SINGLE ENDUPRIGHT 27
RRX C21 C22 DOUBLE NONE 28
RRX C22 C37 SINGLE ENDDOWNRIGHT 29
RRX C22 C23 SINGLE ENDUPRIGHT 30
RRX C23 C24 DOUBLE NONE 31
RRX C40 C30 SINGLE NONE 32
RRX C24 C25 SINGLE ENDUPRIGHT 33
RRX C25 C30 SINGLE NONE 34
RRX C25 C26 DOUBLE NONE 35
RRX C30 C39 SINGLE NONE 36
RRX C30 C29 SINGLE NONE 37
RRX C38 C26 SINGLE NONE 38
RRX C26 C27 SINGLE NONE 39
RRX C28 C29 SINGLE NONE 40
RRX C28 C27 SINGLE NONE 41
RRX C28 O2 SINGLE BEGINWEDGE 42
#
_pdbe_chem_comp_substructure.comp_id RRX
_pdbe_chem_comp_substructure.substructure_name MurckoScaffold
_pdbe_chem_comp_substructure.id S1
_pdbe_chem_comp_substructure.substructure_type scaffold
_pdbe_chem_comp_substructure.substructure_smiles C1=C(/C=C/C=C/C=C/C=C/C=C/C=C/C=C/C=C/C=C/C2=CCCCC2)CCCC1
_pdbe_chem_comp_substructure.substructure_inchis
InChI=1S/C30H36/c1(3-5-7-9-11-13-17-23-29-25-19-15-20-26-29)2-4-6-8-10-12-14-18-24-30-27-21-16-22-28-30/h1-14,17-18,23-25,27H,15-16,19-22,26,28H2/b2-1+,5-3+,6-4+,9-7+,10-8+,13-11+,14-12+,23-17+,24-18+
_pdbe_chem_comp_substructure.substructure_inchikeys RZDCQLYXQKSTLW-HSDZVWSGSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
RRX C1 S1 1
RRX C2 S1 1
RRX C3 S1 1
RRX C30 S1 1
RRX C29 S1 1
RRX C28 S1 1
RRX C27 S1 1
RRX C26 S1 1
RRX C25 S1 1
RRX C24 S1 1
RRX C23 S1 1
RRX C22 S1 1
RRX C21 S1 1
RRX C20 S1 1
RRX C19 S1 1
RRX C18 S1 1
RRX C17 S1 1
RRX C16 S1 1
RRX C15 S1 1
RRX C14 S1 1
RRX C13 S1 1
RRX C12 S1 1
RRX C11 S1 1
RRX C10 S1 1
RRX C9 S1 1
RRX C8 S1 1
RRX C7 S1 1
RRX C6 S1 1
RRX C5 S1 1
RRX C4 S1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id RRX
_pdbe_chem_comp_rdkit_properties.exactmw 552.433
_pdbe_chem_comp_rdkit_properties.amw 552.887
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 1
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 21
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 1
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 41
_pdbe_chem_comp_rdkit_properties.NumAtoms 97
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 1
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.450
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 330.934
_pdbe_chem_comp_rdkit_properties.tpsa 20.230
_pdbe_chem_comp_rdkit_properties.CrippenClogP 11.577
_pdbe_chem_comp_rdkit_properties.CrippenMR 182.782
_pdbe_chem_comp_rdkit_properties.chi0v 20.408
_pdbe_chem_comp_rdkit_properties.chi1v 10.454
_pdbe_chem_comp_rdkit_properties.chi2v 4.040
_pdbe_chem_comp_rdkit_properties.chi3v 4.040
_pdbe_chem_comp_rdkit_properties.chi4v 2.315
_pdbe_chem_comp_rdkit_properties.chi0n 76.408
_pdbe_chem_comp_rdkit_properties.chi1n 38.362
_pdbe_chem_comp_rdkit_properties.chi2n 4.040
_pdbe_chem_comp_rdkit_properties.chi3n 4.040
_pdbe_chem_comp_rdkit_properties.chi4n 2.315
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.900
_pdbe_chem_comp_rdkit_properties.kappa1 5.798
_pdbe_chem_comp_rdkit_properties.kappa2 15.925
_pdbe_chem_comp_rdkit_properties.kappa3 11.852
_pdbe_chem_comp_rdkit_properties.Phi 2.252
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
RRX UniChem DrugBank DB15914
RRX UniChem PDBe RRX
RRX UniChem 'KEGG LIGAND' C08591
RRX UniChem ChEBI 10362
RRX UniChem ZINC ZINC000004097702
RRX UniChem fdasrs 6ZIB13GI33
RRX UniChem SureChEMBL SCHEMBL24469
RRX UniChem HMDB HMDB0033844
RRX UniChem 'PubChem TPHARMA' 15482158
RRX UniChem NMRShiftDB 60022850
RRX UniChem ACTor 472-70-8
RRX UniChem LipidMaps LMPR01070269
RRX UniChem MetaboLights MTBLC10362
RRX UniChem BRENDA 152697
RRX UniChem BRENDA 229141
RRX UniChem BRENDA 26815
RRX UniChem BRENDA 3892
RRX UniChem Rhea 10362
RRX UniChem MedChemExpress HY-108059
RRX UniChem 'Probes And Drugs' PD143838
RRX UniChem PubChem 5281235
RRX UniChem Nikkaji J5.952H
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
RRX C1 12.807 0.454 0.174 ETKDGv3 1
RRX C2 13.906 0.577 -0.915 ETKDGv3 2
RRX O2 -12.761 0.383 3.125 ETKDGv3 3
RRX C3 14.139 -0.748 -1.632 ETKDGv3 4
RRX C40 -12.795 1.067 -1.325 ETKDGv3 5
RRX C30 -12.422 0.781 0.148 ETKDGv3 6
RRX C39 -11.734 2.042 0.724 ETKDGv3 7
RRX C29 -13.745 0.501 0.925 ETKDGv3 8
RRX C28 -13.541 -0.323 2.196 ETKDGv3 9
RRX C27 -12.882 -1.653 1.832 ETKDGv3 10
RRX C26 -11.627 -1.481 1.010 ETKDGv3 11
RRX C38 -10.652 -2.636 1.007 ETKDGv3 12
RRX C25 -11.434 -0.396 0.210 ETKDGv3 13
RRX C24 -10.198 -0.291 -0.603 ETKDGv3 14
RRX C23 -9.020 -0.005 -0.037 ETKDGv3 15
RRX C22 -7.759 0.117 -0.808 ETKDGv3 16
RRX C37 -7.787 0.542 -2.259 ETKDGv3 17
RRX C21 -6.604 -0.170 -0.178 ETKDGv3 18
RRX C20 -5.277 -0.167 -0.832 ETKDGv3 19
RRX C19 -4.165 -0.380 -0.119 ETKDGv3 20
RRX C18 -2.805 -0.385 -0.716 ETKDGv3 21
RRX C36 -2.606 -0.763 -2.166 ETKDGv3 22
RRX C17 -1.768 -0.037 0.071 ETKDGv3 23
RRX C16 -0.370 0.077 -0.400 ETKDGv3 24
RRX C15 0.618 0.357 0.455 ETKDGv3 25
RRX C14 2.016 0.471 -0.016 ETKDGv3 26
RRX C13 3.052 0.819 0.772 ETKDGv3 27
RRX C35 2.853 1.194 2.222 ETKDGv3 28
RRX C12 4.412 0.815 0.174 ETKDGv3 29
RRX C11 5.525 0.606 0.888 ETKDGv3 30
RRX C10 6.850 0.587 0.231 ETKDGv3 31
RRX C9 8.018 0.448 0.889 ETKDGv3 32
RRX C34 8.074 0.367 2.397 ETKDGv3 33
RRX C8 9.262 0.367 0.086 ETKDGv3 34
RRX C7 10.356 -0.284 0.497 ETKDGv3 35
RRX C6 11.582 -0.321 -0.336 ETKDGv3 36
RRX C32 13.377 -0.266 1.417 ETKDGv3 37
RRX C31 12.393 1.887 0.584 ETKDGv3 38
RRX C5 11.643 -1.145 -1.419 ETKDGv3 39
RRX C33 10.458 -1.990 -1.826 ETKDGv3 40
RRX C4 12.855 -1.191 -2.325 ETKDGv3 41
RRX H1 14.863 0.924 -0.469 ETKDGv3 42
RRX H2 13.609 1.335 -1.675 ETKDGv3 43
RRX H3 -12.881 -0.067 4.002 ETKDGv3 44
RRX H4 14.938 -0.618 -2.394 ETKDGv3 45
RRX H5 14.478 -1.529 -0.920 ETKDGv3 46
RRX H6 -13.203 0.153 -1.807 ETKDGv3 47
RRX H7 -13.564 1.868 -1.384 ETKDGv3 48
RRX H8 -11.913 1.404 -1.911 ETKDGv3 49
RRX H9 -11.344 1.859 1.745 ETKDGv3 50
RRX H10 -12.442 2.898 0.762 ETKDGv3 51
RRX H11 -10.874 2.348 0.091 ETKDGv3 52
RRX H12 -14.263 1.451 1.183 ETKDGv3 53
RRX H13 -14.451 -0.066 0.276 ETKDGv3 54
RRX H14 -14.545 -0.530 2.638 ETKDGv3 55
RRX H15 -12.652 -2.206 2.769 ETKDGv3 56
RRX H16 -13.599 -2.271 1.249 ETKDGv3 57
RRX H17 -11.034 -3.490 1.605 ETKDGv3 58
RRX H18 -10.490 -2.997 -0.031 ETKDGv3 59
RRX H19 -9.684 -2.318 1.445 ETKDGv3 60
RRX H20 -10.282 -0.439 -1.672 ETKDGv3 61
RRX H21 -8.976 0.100 1.042 ETKDGv3 62
RRX H22 -7.006 1.306 -2.458 ETKDGv3 63
RRX H23 -7.623 -0.341 -2.912 ETKDGv3 64
RRX H24 -8.753 1.018 -2.525 ETKDGv3 65
RRX H25 -6.640 -0.451 0.870 ETKDGv3 66
RRX H26 -5.203 0.018 -1.894 ETKDGv3 67
RRX H27 -4.249 -0.504 0.956 ETKDGv3 68
RRX H28 -2.436 0.151 -2.773 ETKDGv3 69
RRX H29 -1.743 -1.453 -2.277 ETKDGv3 70
RRX H30 -3.484 -1.309 -2.568 ETKDGv3 71
RRX H31 -1.964 0.205 1.111 ETKDGv3 72
RRX H32 -0.137 -0.046 -1.450 ETKDGv3 73
RRX H33 0.385 0.481 1.505 ETKDGv3 74
RRX H34 2.211 0.231 -1.056 ETKDGv3 75
RRX H36 1.993 1.886 2.333 ETKDGv3 76
RRX H37 2.680 0.280 2.827 ETKDGv3 77
RRX H38 3.733 1.737 2.626 ETKDGv3 78
RRX H39 4.497 0.940 -0.900 ETKDGv3 79
RRX H40 5.449 0.403 1.948 ETKDGv3 80
RRX H42 6.870 0.664 -0.851 ETKDGv3 81
RRX H43 7.418 1.136 2.856 ETKDGv3 82
RRX H44 9.095 0.574 2.777 ETKDGv3 83
RRX H45 7.758 -0.644 2.731 ETKDGv3 84
RRX H46 9.269 0.821 -0.900 ETKDGv3 85
RRX H47 10.384 -0.769 1.463 ETKDGv3 86
RRX H48 12.651 -0.243 2.257 ETKDGv3 87
RRX H49 14.311 0.225 1.765 ETKDGv3 88
RRX H50 13.599 -1.331 1.197 ETKDGv3 89
RRX H51 11.686 1.875 1.441 ETKDGv3 90
RRX H52 13.283 2.478 0.890 ETKDGv3 91
RRX H53 11.901 2.408 -0.265 ETKDGv3 92
RRX H54 9.599 -1.342 -2.097 ETKDGv3 93
RRX H55 10.169 -2.665 -0.993 ETKDGv3 94
RRX H56 10.693 -2.619 -2.711 ETKDGv3 95
RRX H57 12.663 -0.532 -3.199 ETKDGv3 96
RRX H58 13.007 -2.224 -2.706 ETKDGv3 97
#