data_RSK
#
_chem_comp.id RSK
_chem_comp.name (1S,2R)-1,2-diphenylethane-1,2-diamine
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C14 H16 N2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2015-09-03
_chem_comp.pdbx_modified_date 2017-10-06
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 212.290
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code RSK
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5XF5
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
RSK N1 N1 N 0 1 N N N N N N -27.595 -46.625 46.640 0.058 1.435 -1.195 N1 RSK 1
RSK C8 C1 C 0 1 N N S N N N -28.459 -46.667 45.453 0.398 0.117 -0.642 C8 RSK 2
RSK C9 C2 C 0 1 Y N N N N N -27.594 -46.348 44.281 1.873 0.067 -0.335 C9 RSK 3
RSK C14 C3 C 0 1 Y N N N N N -26.296 -46.868 44.175 2.596 -1.080 -0.604 C14 RSK 4
RSK C13 C4 C 0 1 Y N N N N N -25.496 -46.551 43.077 3.948 -1.126 -0.322 C13 RSK 5
RSK C12 C5 C 0 1 Y N N N N N -25.983 -45.710 42.079 4.578 -0.026 0.228 C12 RSK 6
RSK C11 C6 C 0 1 Y N N N N N -27.270 -45.186 42.180 3.855 1.121 0.497 C11 RSK 7
RSK C10 C7 C 0 1 Y N N N N N -28.070 -45.504 43.277 2.503 1.170 0.210 C10 RSK 8
RSK C1 C8 C 0 1 N N R N N N -29.167 -48.021 45.259 -0.398 -0.118 0.643 C1 RSK 9
RSK C2 C9 C 0 1 Y N N N N N -29.756 -48.438 46.570 -1.873 -0.067 0.336 C2 RSK 10
RSK C7 C10 C 0 1 Y N N N N N -31.000 -47.953 46.981 -2.596 1.080 0.605 C7 RSK 11
RSK C6 C11 C 0 1 Y N N N N N -31.537 -48.341 48.209 -3.949 1.126 0.324 C6 RSK 12
RSK C5 C12 C 0 1 Y N N N N N -30.835 -49.211 49.041 -4.578 0.025 -0.227 C5 RSK 13
RSK C4 C13 C 0 1 Y N N N N N -29.592 -49.695 48.643 -3.855 -1.122 -0.496 C4 RSK 14
RSK C3 C14 C 0 1 Y N N N N N -29.054 -49.309 47.414 -2.501 -1.166 -0.219 C3 RSK 15
RSK N2 N2 N 0 1 N N N N N N -30.189 -48.012 44.183 -0.058 -1.435 1.196 N2 RSK 16
RSK H1 H1 H 0 1 N N N N N N -28.136 -46.834 47.454 -0.913 1.472 -1.469 H1 RSK 17
RSK H2 H2 H 0 1 N N N N N N -26.863 -47.300 46.544 0.277 2.170 -0.539 H2 RSK 18
RSK H4 H4 H 0 1 N N N N N N -29.231 -45.888 45.544 0.152 -0.657 -1.369 H4 RSK 19
RSK H5 H5 H 0 1 N N N N N N -25.913 -47.518 44.948 2.104 -1.940 -1.034 H5 RSK 20
RSK H6 H6 H 0 1 N N N N N N -24.498 -46.958 43.001 4.513 -2.023 -0.532 H6 RSK 21
RSK H7 H7 H 0 1 N N N N N N -25.364 -45.465 41.229 5.634 -0.064 0.453 H7 RSK 22
RSK H8 H8 H 0 1 N N N N N N -27.649 -44.533 41.408 4.346 1.981 0.928 H8 RSK 23
RSK H9 H9 H 0 1 N N N N N N -29.066 -45.094 43.350 1.938 2.066 0.420 H9 RSK 24
RSK H10 H10 H 0 1 N N N N N N -28.396 -48.757 44.988 -0.152 0.656 1.370 H10 RSK 25
RSK H11 H11 H 0 1 N N N N N N -31.549 -47.274 46.345 -2.105 1.939 1.036 H11 RSK 26
RSK H12 H12 H 0 1 N N N N N N -32.502 -47.965 48.516 -4.514 2.022 0.535 H12 RSK 27
RSK H13 H13 H 0 1 N N N N N N -31.254 -49.509 49.991 -5.635 0.061 -0.446 H13 RSK 28
RSK H14 H14 H 0 1 N N N N N N -29.044 -50.369 49.285 -4.347 -1.982 -0.926 H14 RSK 29
RSK H15 H15 H 0 1 N N N N N N -28.088 -49.685 47.111 -1.935 -2.061 -0.434 H15 RSK 30
RSK H16 H16 H 0 1 N N N N N N -30.607 -48.918 44.112 -0.277 -2.170 0.541 H16 RSK 31
RSK H17 H17 H 0 1 N N N N N N -30.894 -47.336 44.398 0.912 -1.473 1.470 H17 RSK 32
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
RSK C12 C11 DOUB Y N 1
RSK C12 C13 SING Y N 2
RSK C11 C10 SING Y N 3
RSK C13 C14 DOUB Y N 4
RSK C10 C9 DOUB Y N 5
RSK C14 C9 SING Y N 6
RSK N2 C1 SING N N 7
RSK C9 C8 SING N N 8
RSK C1 C8 SING N N 9
RSK C1 C2 SING N N 10
RSK C8 N1 SING N N 11
RSK C2 C7 DOUB Y N 12
RSK C2 C3 SING Y N 13
RSK C7 C6 SING Y N 14
RSK C3 C4 DOUB Y N 15
RSK C6 C5 DOUB Y N 16
RSK C4 C5 SING Y N 17
RSK N1 H1 SING N N 18
RSK N1 H2 SING N N 19
RSK C8 H4 SING N N 20
RSK C14 H5 SING N N 21
RSK C13 H6 SING N N 22
RSK C12 H7 SING N N 23
RSK C11 H8 SING N N 24
RSK C10 H9 SING N N 25
RSK C1 H10 SING N N 26
RSK C7 H11 SING N N 27
RSK C6 H12 SING N N 28
RSK C5 H13 SING N N 29
RSK C4 H14 SING N N 30
RSK C3 H15 SING N N 31
RSK N2 H16 SING N N 32
RSK N2 H17 SING N N 33
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
RSK InChI InChI 1.03 InChI=1S/C14H16N2/c15-13(11-7-3-1-4-8-11)14(16)12-9-5-2-6-10-12/h1-10,13-14H,15-16H2/t13-,14+
RSK InChIKey InChI 1.03 PONXTPCRRASWKW-OKILXGFUSA-N
RSK SMILES_CANONICAL CACTVS 3.385 N[C@H]([C@H](N)c1ccccc1)c2ccccc2
RSK SMILES CACTVS 3.385 N[CH]([CH](N)c1ccccc1)c2ccccc2
RSK SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 c1ccc(cc1)[C@H]([C@H](c2ccccc2)N)N
RSK SMILES "OpenEye OEToolkits" 1.9.2 c1ccc(cc1)C(C(c2ccccc2)N)N
#
_pdbx_chem_comp_identifier.comp_id RSK
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 1.9.2
_pdbx_chem_comp_identifier.identifier (1S,2R)-1,2-diphenylethane-1,2-diamine
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
RSK 'Create component' 2015-09-03 PDBJ
RSK 'Modify model coordinates code' 2017-10-04 PDBJ
RSK 'Initial release' 2017-10-11 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
RSK N1 N 3.805 0.375 1
RSK C8 C 5.104 -0.375 2
RSK C9 C 5.104 -1.875 3
RSK C14 C 6.404 -2.625 4
RSK C13 C 6.404 -4.125 5
RSK C12 C 5.104 -4.875 6
RSK C11 C 3.805 -4.125 7
RSK C10 C 3.805 -2.625 8
RSK C1 C 6.404 0.375 9
RSK C2 C 6.404 1.875 10
RSK C7 C 7.702 2.625 11
RSK C6 C 7.702 4.125 12
RSK C5 C 6.404 4.875 13
RSK C4 C 5.104 4.125 14
RSK C3 C 5.104 2.625 15
RSK N2 N 7.702 -0.375 16
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
RSK C12 C11 DOUBLE NONE 1
RSK C12 C13 SINGLE NONE 2
RSK C11 C10 SINGLE NONE 3
RSK C13 C14 DOUBLE NONE 4
RSK C10 C9 DOUBLE NONE 5
RSK C14 C9 SINGLE NONE 6
RSK C1 N2 SINGLE BEGINWEDGE 7
RSK C9 C8 SINGLE NONE 8
RSK C1 C8 SINGLE NONE 9
RSK C1 C2 SINGLE NONE 10
RSK C8 N1 SINGLE BEGINDASH 11
RSK C2 C7 DOUBLE NONE 12
RSK C2 C3 SINGLE NONE 13
RSK C7 C6 SINGLE NONE 14
RSK C3 C4 DOUBLE NONE 15
RSK C6 C5 DOUBLE NONE 16
RSK C4 C5 SINGLE NONE 17
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
RSK MurckoScaffold S1 scaffold c1ccc(CCc2ccccc2)cc1 InChI=1S/C14H14/c1-3-7-13(8-4-1)11-12-14-9-5-2-6-10-14/h1-10H,11-12H2 QWUWMCYKGHVNAV-UHFFFAOYSA-N
RSK phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
RSK C8 S1 1
RSK C9 S1 1
RSK C14 S1 1
RSK C13 S1 1
RSK C12 S1 1
RSK C11 S1 1
RSK C10 S1 1
RSK C1 S1 1
RSK C2 S1 1
RSK C7 S1 1
RSK C6 S1 1
RSK C5 S1 1
RSK C4 S1 1
RSK C3 S1 1
RSK C9 F1 1
RSK C10 F1 1
RSK C11 F1 1
RSK C12 F1 1
RSK C13 F1 1
RSK C14 F1 1
RSK C2 F1 2
RSK C7 F1 2
RSK C6 F1 2
RSK C5 F1 2
RSK C4 F1 2
RSK C3 F1 2
#
_pdbe_chem_comp_rdkit_properties.comp_id RSK
_pdbe_chem_comp_rdkit_properties.exactmw 212.131
_pdbe_chem_comp_rdkit_properties.amw 212.296
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 2
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 4
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 5
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 2
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 16
_pdbe_chem_comp_rdkit_properties.NumAtoms 32
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 2
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.143
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 2
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 118.610
_pdbe_chem_comp_rdkit_properties.tpsa 52.040
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.277
_pdbe_chem_comp_rdkit_properties.CrippenMR 66.209
_pdbe_chem_comp_rdkit_properties.chi0v 7.894
_pdbe_chem_comp_rdkit_properties.chi1v 4.197
_pdbe_chem_comp_rdkit_properties.chi2v 1.698
_pdbe_chem_comp_rdkit_properties.chi3v 1.698
_pdbe_chem_comp_rdkit_properties.chi4v 0.974
_pdbe_chem_comp_rdkit_properties.chi0n 23.894
_pdbe_chem_comp_rdkit_properties.chi1n 11.986
_pdbe_chem_comp_rdkit_properties.chi2n 1.698
_pdbe_chem_comp_rdkit_properties.chi3n 1.698
_pdbe_chem_comp_rdkit_properties.chi4n 0.974
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.640
_pdbe_chem_comp_rdkit_properties.kappa1 2.606
_pdbe_chem_comp_rdkit_properties.kappa2 4.924
_pdbe_chem_comp_rdkit_properties.kappa3 2.296
_pdbe_chem_comp_rdkit_properties.Phi 0.802
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
RSK UniChem ChEMBL CHEMBL206743
RSK UniChem PDBe RSK
RSK UniChem ZINC ZINC000006581845
RSK UniChem eMolecules 27253565
RSK UniChem SureChEMBL SCHEMBL2067094
RSK UniChem BindingDb 50178427
RSK UniChem ChemicalBook CB5446737
RSK UniChem 'PubChem TPHARMA' 15171961
RSK UniChem PubChem 6931234
RSK UniChem Mcule MCULE-2915779897
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
RSK N1 0.050 -1.887 0.181 ETKDGv3 1
RSK C8 -0.357 -0.575 -0.333 ETKDGv3 2
RSK C9 -1.870 -0.419 -0.300 ETKDGv3 3
RSK C14 -2.609 -0.182 -1.568 ETKDGv3 4
RSK C13 -3.940 -0.035 -1.560 ETKDGv3 5
RSK C12 -4.685 -0.106 -0.288 ETKDGv3 6
RSK C11 -4.031 -0.317 0.859 ETKDGv3 7
RSK C10 -2.562 -0.479 0.857 ETKDGv3 8
RSK C1 0.357 0.563 0.442 ETKDGv3 9
RSK C2 1.870 0.408 0.386 ETKDGv3 10
RSK C7 2.577 0.202 1.515 ETKDGv3 11
RSK C6 4.045 0.046 1.462 ETKDGv3 12
RSK C5 4.685 0.106 0.289 ETKDGv3 13
RSK C4 3.924 0.328 -0.955 ETKDGv3 14
RSK C3 2.594 0.471 -0.913 ETKDGv3 15
RSK N2 -0.050 1.873 -0.076 ETKDGv3 16
RSK H1 -0.225 -1.979 1.186 ETKDGv3 17
RSK H2 -0.453 -2.631 -0.355 ETKDGv3 18
RSK H4 -0.025 -0.522 -1.394 ETKDGv3 19
RSK H5 -2.075 -0.126 -2.508 ETKDGv3 20
RSK H6 -4.472 0.138 -2.486 ETKDGv3 21
RSK H7 -5.761 0.013 -0.287 ETKDGv3 22
RSK H8 -4.576 -0.368 1.793 ETKDGv3 23
RSK H9 -2.060 -0.643 1.801 ETKDGv3 24
RSK H10 0.023 0.511 1.502 ETKDGv3 25
RSK H11 2.084 0.146 2.478 ETKDGv3 26
RSK H12 4.602 -0.118 2.376 ETKDGv3 27
RSK H13 5.761 -0.009 0.250 ETKDGv3 28
RSK H14 4.446 0.374 -1.903 ETKDGv3 29
RSK H15 2.052 0.631 -1.836 ETKDGv3 30
RSK H16 0.446 2.619 0.464 ETKDGv3 31
RSK H17 0.234 1.966 -1.078 ETKDGv3 32
#