data_RUX
#
_chem_comp.id RUX
_chem_comp.name
"[4-amino-2-methyl-6-(pyridin-2-yl-kappaN)quinazolin-7-yl-kappaC~7~](carbonyl){1-[(2,6-dimethoxyphenoxy)carbonyl]cyclopenta-2,4-dien-1-yl}ruthenium"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C29 H24 N4 O5 Ru"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2013-09-19
_chem_comp.pdbx_modified_date 2014-02-07
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 609.595
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code RUX
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag Y
_chem_comp.pdbx_model_coordinates_db_code 3WHW
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
RUX N2 N2 N 0 1 N N N N N N 25.689 -44.887 12.784 ? ? ? N2 RUX 1
RUX C3 C3 C 0 1 Y N N N N N 26.381 -45.823 12.115 ? ? ? C3 RUX 2
RUX N N N 0 1 Y N N N N N 25.739 -46.561 11.201 ? ? ? N RUX 3
RUX C2 C2 C 0 1 Y N N N N N 27.726 -46.026 12.359 ? ? ? C2 RUX 4
RUX C7 C7 C 0 1 Y N N N N N 28.402 -45.269 13.304 ? ? ? C7 RUX 5
RUX C6 C6 C 0 1 Y N N N N N 29.737 -45.544 13.473 ? ? ? C6 RUX 6
RUX C5 C5 C 0 1 Y N N N N N 30.346 -46.498 12.714 ? ? ? C5 RUX 7
RUX C4 C4 C 0 1 Y N N N N N 29.693 -47.269 11.805 ? ? ? C4 RUX 8
RUX C1 C1 C 0 1 Y N N N N N 28.369 -47.005 11.626 ? ? ? C1 RUX 9
RUX N1 N1 N 0 1 Y N N N N N 27.709 -47.727 10.725 ? ? ? N1 RUX 10
RUX C C C 0 1 Y N N N N N 26.405 -47.502 10.517 ? ? ? C RUX 11
RUX C8 C8 C 0 1 Y N N N N N 30.605 -44.841 14.420 ? ? ? C8 RUX 12
RUX C12 C12 C 0 1 Y N N N N N 30.117 -43.854 15.202 ? ? ? C12 RUX 13
RUX C11 C11 C 0 1 Y N N N N N 31.069 -43.332 16.009 ? ? ? C11 RUX 14
RUX C10 C10 C 0 1 Y N N N N N 32.390 -43.754 16.038 ? ? ? C10 RUX 15
RUX C9 C9 C 0 1 Y N N N N N 32.818 -44.740 15.240 ? ? ? C9 RUX 16
RUX N3 N3 N 0 1 Y N N N N N 31.879 -45.226 14.463 ? ? ? N3 RUX 17
RUX O11 O11 O 1 1 N N N N N N 31.268 -48.964 15.050 ? ? ? O11 RUX 18
RUX C13 C13 C -1 1 N N N N N N 31.716 -48.114 14.261 ? ? ? C13 RUX 19
RUX RU RU RU 0 0 N N N N N N 32.376 -46.865 13.103 ? ? ? RU RUX 20
RUX C14 C14 C 0 1 N N N N N N 25.682 -48.322 9.499 ? ? ? C14 RUX 21
RUX O O O 0 1 N N N N N N 35.546 -47.944 14.577 ? ? ? O RUX 22
RUX C15 C15 C 0 1 N N N N N N 35.308 -46.875 14.046 ? ? ? C15 RUX 23
RUX C16 C16 C 0 1 N N N N N N 34.450 -46.874 12.803 ? ? ? C16 RUX 24
RUX C17 C17 C 0 1 N N N N N N 33.907 -45.718 12.121 ? ? ? C17 RUX 25
RUX C18 C18 C 0 1 N N N N N N 33.887 -48.122 12.302 ? ? ? C18 RUX 26
RUX C19 C19 C 0 1 N N N N N N 32.955 -47.691 11.260 ? ? ? C19 RUX 27
RUX C20 C20 C 0 1 N N N N N N 32.964 -46.261 11.149 ? ? ? C20 RUX 28
RUX O1 O1 O 0 1 N N N N N N 35.920 -45.693 14.635 ? ? ? O1 RUX 29
RUX C21 C21 C 0 1 Y N N N N N 36.845 -45.892 15.641 ? ? ? C21 RUX 30
RUX C22 C22 C 0 1 Y N N N N N 38.178 -46.226 15.393 ? ? ? C22 RUX 31
RUX O2 O2 O 0 1 N N N N N N 38.677 -46.364 14.134 ? ? ? O2 RUX 32
RUX C23 C23 C 0 1 N N N N N N 39.088 -47.653 13.697 ? ? ? C23 RUX 33
RUX C24 C24 C 0 1 Y N N N N N 39.072 -46.441 16.426 ? ? ? C24 RUX 34
RUX C25 C25 C 0 1 Y N N N N N 38.646 -46.323 17.734 ? ? ? C25 RUX 35
RUX C26 C26 C 0 1 Y N N N N N 37.322 -45.994 17.997 ? ? ? C26 RUX 36
RUX C27 C27 C 0 1 Y N N N N N 36.428 -45.783 16.953 ? ? ? C27 RUX 37
RUX O3 O3 O 0 1 N N N N N N 35.129 -45.461 17.219 ? ? ? O3 RUX 38
RUX C28 C28 C 0 1 N N N N N N 34.802 -44.777 18.424 ? ? ? C28 RUX 39
RUX H1 H1 H 0 1 N N N N N N 24.739 -44.889 12.473 ? ? ? H1 RUX 40
RUX H2 H2 H 0 1 N N N N N N 25.720 -45.086 13.763 ? ? ? H2 RUX 41
RUX H3 H3 H 0 1 N N N N N N 27.904 -44.502 13.878 ? ? ? H3 RUX 42
RUX H4 H4 H 0 1 N N N N N N 30.197 -48.049 11.254 ? ? ? H4 RUX 43
RUX H5 H5 H 0 1 N N N N N N 29.090 -43.521 15.185 ? ? ? H5 RUX 44
RUX H6 H6 H 0 1 N N N N N N 30.781 -42.533 16.676 ? ? ? H6 RUX 45
RUX H7 H7 H 0 1 N N N N N N 33.085 -43.279 16.715 ? ? ? H7 RUX 46
RUX H8 H8 H 0 1 N N N N N N 33.836 -45.100 15.236 ? ? ? H8 RUX 47
RUX H12 H12 H 0 1 N N N N N N 24.628 -48.009 9.457 ? ? ? H12 RUX 48
RUX H13 H13 H 0 1 N N N N N N 26.147 -48.176 8.513 ? ? ? H13 RUX 49
RUX H14 H14 H 0 1 N N N N N N 25.738 -49.385 9.777 ? ? ? H14 RUX 50
RUX H15 H15 H 0 1 N N N N N N 34.148 -44.679 12.294 ? ? ? H15 RUX 51
RUX H16 H16 H 0 1 N N N N N N 34.107 -49.129 12.625 ? ? ? H16 RUX 52
RUX H17 H17 H 0 1 N N N N N N 32.348 -48.354 10.661 ? ? ? H17 RUX 53
RUX H18 H18 H 0 1 N N N N N N 32.370 -45.681 10.459 ? ? ? H18 RUX 54
RUX H19 H19 H 0 1 N N N N N N 39.463 -47.589 12.665 ? ? ? H19 RUX 55
RUX H20 H20 H 0 1 N N N N N N 39.887 -48.025 14.355 ? ? ? H20 RUX 56
RUX H21 H21 H 0 1 N N N N N N 38.232 -48.343 13.733 ? ? ? H21 RUX 57
RUX H22 H22 H 0 1 N N N N N N 40.098 -46.700 16.211 ? ? ? H22 RUX 58
RUX H23 H23 H 0 1 N N N N N N 39.338 -46.485 18.548 ? ? ? H23 RUX 59
RUX H24 H24 H 0 1 N N N N N N 36.985 -45.902 19.019 ? ? ? H24 RUX 60
RUX H25 H25 H 0 1 N N N N N N 33.716 -44.604 18.465 ? ? ? H25 RUX 61
RUX H26 H26 H 0 1 N N N N N N 35.109 -45.387 19.287 ? ? ? H26 RUX 62
RUX H27 H27 H 0 1 N N N N N N 35.328 -43.812 18.452 ? ? ? H27 RUX 63
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
RUX N2 C3 SING N N 1
RUX C3 N DOUB Y N 2
RUX C3 C2 SING Y N 3
RUX N C SING Y N 4
RUX C2 C7 DOUB Y N 5
RUX C2 C1 SING Y N 6
RUX C7 C6 SING Y N 7
RUX C6 C5 DOUB Y N 8
RUX C6 C8 SING N N 9
RUX C5 C4 SING Y N 10
RUX C5 RU SING N N 11
RUX C4 C1 DOUB Y N 12
RUX C1 N1 SING Y N 13
RUX N1 C DOUB Y N 14
RUX C C14 SING N N 15
RUX C8 C12 DOUB Y N 16
RUX C8 N3 SING Y N 17
RUX C12 C11 SING Y N 18
RUX C11 C10 DOUB Y N 19
RUX C10 C9 SING Y N 20
RUX C9 N3 DOUB Y N 21
RUX N3 RU SING N N 22
RUX O11 C13 TRIP N N 23
RUX C13 RU SING N N 24
RUX RU C16 SING N N 25
RUX O C15 DOUB N N 26
RUX C15 C16 SING N N 27
RUX C15 O1 SING N N 28
RUX C16 C17 SING N N 29
RUX C16 C18 SING N N 30
RUX C17 C20 DOUB N N 31
RUX C18 C19 DOUB N N 32
RUX C19 C20 SING N N 33
RUX O1 C21 SING N N 34
RUX C21 C22 DOUB Y N 35
RUX C21 C27 SING Y N 36
RUX C22 O2 SING N N 37
RUX C22 C24 SING Y N 38
RUX O2 C23 SING N N 39
RUX C24 C25 DOUB Y N 40
RUX C25 C26 SING Y N 41
RUX C26 C27 DOUB Y N 42
RUX C27 O3 SING N N 43
RUX O3 C28 SING N N 44
RUX N2 H1 SING N N 45
RUX N2 H2 SING N N 46
RUX C7 H3 SING N N 47
RUX C4 H4 SING N N 48
RUX C12 H5 SING N N 49
RUX C11 H6 SING N N 50
RUX C10 H7 SING N N 51
RUX C9 H8 SING N N 52
RUX C14 H12 SING N N 53
RUX C14 H13 SING N N 54
RUX C14 H14 SING N N 55
RUX C17 H15 SING N N 56
RUX C18 H16 SING N N 57
RUX C19 H17 SING N N 58
RUX C20 H18 SING N N 59
RUX C23 H19 SING N N 60
RUX C23 H20 SING N N 61
RUX C23 H21 SING N N 62
RUX C24 H22 SING N N 63
RUX C25 H23 SING N N 64
RUX C26 H24 SING N N 65
RUX C28 H25 SING N N 66
RUX C28 H26 SING N N 67
RUX C28 H27 SING N N 68
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
RUX SMILES ACDLabs 12.01 "O=C(Oc1c(OC)cccc1OC)C2(C=CC=C2)[Ru]5([C-]#[O+])n6c(c4cc3c(nc(nc3cc45)C)N)cccc6"
RUX InChI InChI 1.03 InChI=1S/C14H11N4.C14H13O4.CO.Ru/c1-9-17-13-6-5-10(8-11(13)14(15)18-9)12-4-2-3-7-16-12;1-16-11-8-5-9-12(17-2)13(11)18-14(15)10-6-3-4-7-10;1-2;/h2-4,6-8H,1H3,(H2,15,17,18);3-9H,1-2H3;;
RUX InChIKey InChI 1.03 AOUPQUZYXKBCEC-UHFFFAOYSA-N
RUX SMILES_CANONICAL CACTVS 3.385 "COc1cccc(OC)c1OC(=O)C2([Ru]3(|[C-]#[O+])|n4ccccc4c5cc6c(N)nc(C)nc6cc35)C=CC=C2"
RUX SMILES CACTVS 3.385 "COc1cccc(OC)c1OC(=O)C2([Ru]3(|[C-]#[O+])|n4ccccc4c5cc6c(N)nc(C)nc6cc35)C=CC=C2"
RUX SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "Cc1nc2cc3c(cc2c(n1)N)C4=CC=CC=[N]4[Ru]3([C-]#[O+])C5(C=CC=C5)C(=O)Oc6c(cccc6OC)OC"
RUX SMILES "OpenEye OEToolkits" 1.7.6 "Cc1nc2cc3c(cc2c(n1)N)C4=CC=CC=[N]4[Ru]3([C-]#[O+])C5(C=CC=C5)C(=O)Oc6c(cccc6OC)OC"
#
_pdbx_chem_comp_identifier.comp_id RUX
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program ACDLabs
_pdbx_chem_comp_identifier.program_version 12.01
_pdbx_chem_comp_identifier.identifier
"[4-amino-2-methyl-6-(pyridin-2-yl-kappaN)quinazolin-7-yl-kappaC~7~](carbonyl){1-[(2,6-dimethoxyphenoxy)carbonyl]cyclopenta-2,4-dien-1-yl}ruthenium"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
RUX 'Create component' 2013-09-19 PDBJ
RUX 'Modify formal charge' 2013-10-22 PDBJ
RUX 'Modify value order' 2013-10-22 PDBJ
RUX 'Modify formula' 2013-10-22 PDBJ
RUX 'Initial release' 2014-02-12 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
RUX N2 N -3.310 -5.392 1
RUX C3 C -3.319 -3.893 2
RUX N N -4.624 -3.151 3
RUX C2 C -2.031 -3.135 4
RUX C7 C -0.738 -3.883 5
RUX C6 C 0.555 -3.139 6
RUX C5 C 0.563 -1.637 7
RUX C4 C -0.742 -0.878 8
RUX C1 C -2.036 -1.631 9
RUX N1 N -3.344 -0.886 10
RUX C C -4.635 -1.648 11
RUX C8 C 1.986 -3.614 12
RUX C12 C 2.589 -4.989 13
RUX C11 C 4.082 -5.157 14
RUX C10 C 4.963 -3.945 15
RUX C9 C 4.358 -2.570 16
RUX N3 N 2.868 -2.406 17
RUX O11 O 0.542 1.168 18
RUX C13 C 1.277 0.012 19
RUX RU Ru 1.987 -1.180 20
RUX C14 C -5.942 -0.908 21
RUX O O 1.932 3.825 22
RUX C15 C 1.361 2.375 23
RUX C16 C 3.250 -0.051 24
RUX C17 C 3.819 -1.449 25
RUX C18 C 4.395 0.913 26
RUX C19 C 5.682 0.120 27
RUX C20 C 5.322 -1.339 28
RUX O1 O -0.375 2.354 29
RUX C21 C -1.417 3.768 30
RUX C22 C -2.904 3.594 31
RUX O2 O -3.499 2.216 32
RUX C23 C -4.989 2.042 33
RUX C24 C -3.803 4.797 34
RUX C25 C -3.208 6.174 35
RUX C26 C -1.720 6.349 36
RUX C27 C -0.821 5.146 37
RUX O3 O 0.667 5.322 38
RUX C28 C 1.259 6.700 39
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
RUX N2 C3 SINGLE NONE 1
RUX C3 N DOUBLE NONE 2
RUX C3 C2 SINGLE NONE 3
RUX N C SINGLE NONE 4
RUX C2 C7 DOUBLE NONE 5
RUX C2 C1 SINGLE NONE 6
RUX C7 C6 SINGLE NONE 7
RUX C6 C5 DOUBLE NONE 8
RUX C6 C8 SINGLE NONE 9
RUX C5 C4 SINGLE NONE 10
RUX C5 RU SINGLE NONE 11
RUX C4 C1 DOUBLE NONE 12
RUX C1 N1 SINGLE NONE 13
RUX N1 C DOUBLE NONE 14
RUX C C14 SINGLE NONE 15
RUX C8 C12 DOUBLE NONE 16
RUX C8 N3 SINGLE NONE 17
RUX C12 C11 SINGLE NONE 18
RUX C11 C10 DOUBLE NONE 19
RUX C10 C9 SINGLE NONE 20
RUX C9 N3 DOUBLE NONE 21
RUX N3 RU SINGLE NONE 22
RUX O11 C13 TRIPLE NONE 23
RUX C13 RU SINGLE NONE 24
RUX RU C16 SINGLE NONE 25
RUX O C15 DOUBLE NONE 26
RUX C15 C16 SINGLE NONE 27
RUX C15 O1 SINGLE NONE 28
RUX C16 C17 SINGLE NONE 29
RUX C16 C18 SINGLE NONE 30
RUX C17 C20 DOUBLE NONE 31
RUX C18 C19 DOUBLE NONE 32
RUX C19 C20 SINGLE NONE 33
RUX O1 C21 SINGLE NONE 34
RUX C21 C22 DOUBLE NONE 35
RUX C21 C27 SINGLE NONE 36
RUX C22 O2 SINGLE NONE 37
RUX C22 C24 SINGLE NONE 38
RUX O2 C23 SINGLE NONE 39
RUX C24 C25 DOUBLE NONE 40
RUX C25 C26 SINGLE NONE 41
RUX C26 C27 DOUBLE NONE 42
RUX C27 O3 SINGLE NONE 43
RUX O3 C28 SINGLE NONE 44
#
#
#
_pdbe_chem_comp_rdkit_properties.comp_id RUX
#
_pdbe_chem_comp_external_mappings.comp_id RUX
_pdbe_chem_comp_external_mappings.source UniChem
_pdbe_chem_comp_external_mappings.resource PDBe
_pdbe_chem_comp_external_mappings.resource_id RUX
#