data_RX3
#
_chem_comp.id RX3
_chem_comp.name
;N-({(1S,2R)-2-[(S)-[(1R)-1-{[(BENZYLOXY)CARBONYL]AMINO}-2-PHENYLETHYL](HYDROXY)PHOSPHORYL]CYCLOPENTYL}CARBONYL)-L-TRYPT
OPHAN
;
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C33 H36 N3 O7 P"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms RXPA380
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2007-01-04
_chem_comp.pdbx_modified_date 2020-06-17
_chem_comp.pdbx_ambiguous_flag ?
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 617.629
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code RX3
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details "OpenEye/OEToolkits V1.4.2"
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 2OC2
_chem_comp.pdbx_subcomponent_list "PHQ PPH IQ0 TRP"
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
RX3 C1 C1 C 0 1 N N N N N N 42.182 37.673 50.817 -1.627 -2.295 -4.675 C1 PHQ 1
RX3 O2 O2 O 0 1 N N N N N N 43.056 36.897 51.157 -1.961 -3.430 -4.353 O1 PHQ 2
RX3 O1 O1 O 0 1 N N N N N N 42.113 38.941 51.509 -0.413 -1.965 -5.207 O2 PHQ 3
RX3 C2 C2 C 0 1 N N N N N N 43.288 39.680 51.835 0.505 -3.049 -5.386 C2 PHQ 4
RX3 C3 C3 C 0 1 Y N N N N N 42.922 41.112 52.177 1.779 -2.521 -5.975 C3 PHQ 5
RX3 C4 C4 C 0 1 Y N N N N N 42.859 42.081 51.176 2.800 -2.092 -5.135 C4 PHQ 6
RX3 C6 C6 C 0 1 Y N N N N N 42.527 43.398 51.504 3.985 -1.600 -5.683 C5 PHQ 7
RX3 C8 C8 C 0 1 Y N N N N N 42.251 43.754 52.830 4.141 -1.541 -7.068 C6 PHQ 8
RX3 C7 C7 C 0 1 Y N N N N N 42.313 42.788 53.830 3.112 -1.974 -7.905 C7 PHQ 9
RX3 C5 C5 C 0 1 Y N N N N N 42.646 41.470 53.503 1.927 -2.465 -7.356 C8 PHQ 10
RX3 O3 O3 O 0 1 N N N N N N 42.002 37.280 46.842 -3.496 1.303 -2.782 O1 PPH 11
RX3 P1 P1 P 0 1 N N R N N N 42.353 36.188 47.836 -3.684 -0.167 -2.542 P1 PPH 12
RX3 O4 O4 O 0 1 N N N N N N 43.722 36.349 48.429 -5.054 -0.533 -1.762 O2 PPH 13
RX3 C9 C9 C 0 1 N N N N N N 41.144 36.380 49.067 -3.765 -1.164 -4.032 C1 PPH 14
RX3 N1 N1 N 0 1 N N N N N N 41.276 37.444 49.865 -2.408 -1.163 -4.563 N1 PPH 15
RX3 C10 C10 C 0 1 N N N N N N 39.885 35.528 49.181 -4.759 -0.618 -5.063 C2 PPH 16
RX3 C11 C11 C 0 1 Y N N N N N 38.957 35.869 50.343 -4.808 -1.427 -6.336 C3 PPH 17
RX3 C12 C12 C 0 1 Y N N N N N 38.361 37.132 50.472 -5.700 -2.483 -6.437 C4 PPH 18
RX3 C14 C14 C 0 1 Y N N N N N 37.520 37.427 51.551 -5.744 -3.231 -7.614 C5 PPH 19
RX3 C16 C16 C 0 1 Y N N N N N 37.248 36.449 52.512 -4.897 -2.913 -8.675 C6 PPH 20
RX3 C15 C15 C 0 1 Y N N N N N 37.831 35.182 52.391 -4.004 -1.847 -8.559 C7 PPH 21
RX3 C13 C13 C 0 1 Y N N N N N 38.677 34.897 51.311 -3.959 -1.099 -7.382 C8 PPH 22
RX3 C19 C19 C 0 1 N N N N N N 41.240 34.676 44.729 -0.940 0.559 -0.112 C19 IQ0 23
RX3 O5 O5 O 0 1 N N N N N N 40.157 34.602 45.317 0.061 -0.025 0.287 O5 IQ0 24
RX3 C18 C18 C 0 1 N N R N N N 42.557 34.671 45.465 -2.253 -0.161 -0.143 C18 IQ0 25
RX3 C20 C20 C 0 1 N N N N N N 43.323 33.378 45.202 -2.311 -1.227 0.953 C20 IQ0 26
RX3 C21 C21 C 0 1 N N N N N N 43.246 32.527 46.471 -2.046 -2.541 0.234 C21 IQ0 27
RX3 C22 C22 C 0 1 N N N N N N 42.601 33.353 47.587 -2.741 -2.347 -1.100 C22 IQ0 28
RX3 C17 C17 C 0 1 N N N N N N 42.455 34.711 46.962 -2.418 -0.903 -1.478 C17 IQ0 29
RX3 N2 N2 N 0 1 N N N N N N 41.374 34.765 43.405 -1.004 1.866 -0.556 N TRP 30
RX3 C23 C23 C 0 1 N N S N N N 40.256 34.763 42.470 0.145 2.741 -0.607 CA TRP 31
RX3 C24 C24 C 0 1 N N N N N N 39.555 33.421 42.390 0.368 3.433 0.729 C TRP 32
RX3 O6 O6 O 0 1 N N N N N N 38.463 33.336 41.784 1.330 4.161 0.951 O TRP 33
RX3 C25 C25 C 0 1 N N N N N N 40.831 35.196 41.111 -0.005 3.786 -1.721 CB TRP 34
RX3 C26 C26 C 0 1 Y N N N N N 41.969 34.346 40.583 0.289 3.230 -3.093 CG TRP 35
RX3 C27 C27 C 0 1 Y N N N N N 41.857 33.256 39.727 -0.636 2.668 -3.911 CD1 TRP 36
RX3 C28 C28 C 0 1 Y N N N N N 43.330 34.510 40.824 1.548 3.217 -3.714 CD2 TRP 37
RX3 N3 N3 N 0 1 Y N N N N N 43.097 32.765 39.465 0.021 2.293 -5.053 NE1 TRP 38
RX3 C29 C29 C 0 1 Y N N N N N 44.018 33.514 40.124 1.356 2.617 -4.960 CE2 TRP 39
RX3 C30 C30 C 0 1 Y N N N N N 44.011 35.451 41.605 2.842 3.649 -3.361 CE3 TRP 40
RX3 C31 C31 C 0 1 Y N N N N N 45.422 33.454 40.213 2.398 2.426 -5.875 CZ2 TRP 41
RX3 C32 C32 C 0 1 Y N N N N N 45.405 35.383 41.683 3.894 3.465 -4.266 CZ3 TRP 42
RX3 C33 C33 C 0 1 Y N N N N N 46.108 34.393 40.993 3.673 2.862 -5.503 CH2 TRP 43
RX3 OXT OXT O 0 1 N N N N N N 40.074 32.424 42.935 -0.585 3.193 1.661 OXT TRP 44
RX3 H21 1H2 H 0 1 N N N N N N 43.782 39.214 52.701 0.050 -3.798 -6.043 H21 PHQ 45
RX3 H22 2H2 H 0 1 N N N N N N 43.968 39.677 50.970 0.693 -3.523 -4.416 H22 PHQ 46
RX3 H4 H4 H 0 1 N N N N N N 43.066 41.814 50.150 2.688 -2.134 -4.055 H41 PHQ 47
RX3 H6 H6 H 0 1 N N N N N N 42.483 44.148 50.728 4.786 -1.263 -5.031 H51 PHQ 48
RX3 H8 H8 H 0 1 N N N N N N 41.991 44.773 53.075 5.064 -1.159 -7.495 H61 PHQ 49
RX3 H7 H7 H 0 1 N N N N N N 42.105 43.056 54.855 3.234 -1.928 -8.983 H71 PHQ 50
RX3 H5 H5 H 0 1 N N N N N N 42.691 40.721 54.280 1.131 -2.800 -8.016 H81 PHQ 51
RX3 HO4 HO4 H 0 1 N N N N N N 44.367 36.383 47.733 -5.711 -1.113 -2.203 H1 PPH 52
RX3 H9 H9 H 0 1 N N N N N N 41.393 35.352 49.369 -4.033 -2.189 -3.750 H2 PPH 53
RX3 HN1 HN1 H 0 1 N N N N N N 40.601 38.170 49.730 -2.015 -0.278 -4.870 H3 PPH 54
RX3 H101 1H10 H 0 0 N N N N N N 39.312 35.661 48.252 -5.767 -0.598 -4.630 H5 PPH 55
RX3 H102 2H10 H 0 0 N N N N N N 40.231 34.499 49.361 -4.523 0.428 -5.294 H6 PPH 56
RX3 H12 H12 H 0 1 N N N N N N 38.554 37.889 49.727 -6.364 -2.739 -5.616 H7 PPH 57
RX3 H14 H14 H 0 1 N N N N N N 37.081 38.410 51.641 -6.439 -4.061 -7.704 H8 PPH 58
RX3 H16 H16 H 0 1 N N N N N N 36.593 36.669 53.342 -4.931 -3.495 -9.591 H9 PPH 59
RX3 H15 H15 H 0 1 N N N N N N 37.628 34.423 53.132 -3.344 -1.599 -9.385 H10 PPH 60
RX3 H13 H13 H 0 1 N N N N N N 39.119 33.915 51.224 -3.261 -0.271 -7.301 H11 PPH 61
RX3 H18 H18 H 0 1 N N N N N N 43.046 35.582 45.089 -3.032 0.593 0.010 H18 IQ0 62
RX3 H201 1H20 H 0 0 N N N N N N 42.872 32.837 44.357 -3.318 -1.248 1.388 H201 IQ0 63
RX3 H202 2H20 H 0 0 N N N N N N 44.371 33.596 44.948 -1.598 -1.061 1.767 H202 IQ0 64
RX3 H17 H17 H 0 1 N N N N N N 41.664 35.247 47.507 -1.482 -0.884 -2.051 H171 IQ0 65
RX3 H211 1H21 H 0 0 N N N N N N 42.640 31.630 46.278 -0.969 -2.684 0.087 H211 IQ0 66
RX3 H212 2H21 H 0 0 N N N N N N 44.258 32.220 46.774 -2.435 -3.402 0.786 H212 IQ0 67
RX3 H221 1H22 H 0 0 N N N N N N 41.628 32.938 47.889 -2.394 -3.057 -1.857 H221 IQ0 68
RX3 H222 2H22 H 0 0 N N N N N N 43.196 33.366 48.512 -3.824 -2.481 -0.991 H222 IQ0 69
RX3 HN2 HN2 H 0 1 N N N N N N 42.299 34.838 43.031 -1.902 2.229 -0.860 H TRP 70
RX3 H23 H23 H 0 1 N N N N N N 39.474 35.457 42.810 1.013 2.095 -0.780 HA TRP 71
RX3 H251 1H25 H 0 0 N N N N N N 41.210 36.223 41.224 -1.025 4.192 -1.729 HB2 TRP 72
RX3 H252 2H25 H 0 0 N N N N N N 40.011 35.093 40.385 0.647 4.647 -1.521 HB3 TRP 73
RX3 H27 H27 H 0 1 N N N N N N 40.932 32.862 39.333 -1.697 2.491 -3.807 HD1 TRP 74
RX3 HN3 HN3 H 0 1 N N N N N N 43.299 31.979 38.881 -0.410 1.844 -5.849 HE1 TRP 75
RX3 H30 H30 H 0 1 N N N N N N 43.468 36.217 42.139 3.030 4.121 -2.401 HE3 TRP 76
RX3 H31 H31 H 0 1 N N N N N N 45.967 32.687 39.682 2.227 1.957 -6.838 HZ2 TRP 77
RX3 H32 H32 H 0 1 N N N N N N 45.943 36.102 42.282 4.893 3.797 -4.000 HZ3 TRP 78
RX3 H33 H33 H 0 1 N N N N N N 47.185 34.351 41.061 4.503 2.729 -6.191 HH2 TRP 79
RX3 HOXT HOXT H 0 0 N N N N N N 39.518 31.665 42.804 -0.445 3.643 2.520 HXT TRP 80
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
RX3 OXT C24 SING N N 1
RX3 OXT HOXT SING N N 2
RX3 C24 O6 DOUB N N 3
RX3 C24 C23 SING N N 4
RX3 C23 C25 SING N N 5
RX3 C23 N2 SING N N 6
RX3 C23 H23 SING N N 7
RX3 C25 C26 SING N N 8
RX3 C25 H251 SING N N 9
RX3 C25 H252 SING N N 10
RX3 C26 C27 DOUB Y N 11
RX3 C26 C28 SING Y N 12
RX3 C28 C29 SING Y N 13
RX3 C28 C30 DOUB Y N 14
RX3 C30 C32 SING Y N 15
RX3 C30 H30 SING N N 16
RX3 C32 C33 DOUB Y N 17
RX3 C32 H32 SING N N 18
RX3 C33 C31 SING Y N 19
RX3 C33 H33 SING N N 20
RX3 C31 C29 DOUB Y N 21
RX3 C31 H31 SING N N 22
RX3 C29 N3 SING Y N 23
RX3 N3 C27 SING Y N 24
RX3 N3 HN3 SING N N 25
RX3 C27 H27 SING N N 26
RX3 N2 C19 SING N N 27
RX3 N2 HN2 SING N N 28
RX3 C19 O5 DOUB N N 29
RX3 C19 C18 SING N N 30
RX3 C18 C20 SING N N 31
RX3 C18 C17 SING N N 32
RX3 C18 H18 SING N N 33
RX3 C20 C21 SING N N 34
RX3 C20 H201 SING N N 35
RX3 C20 H202 SING N N 36
RX3 C21 C22 SING N N 37
RX3 C21 H211 SING N N 38
RX3 C21 H212 SING N N 39
RX3 C22 C17 SING N N 40
RX3 C22 H221 SING N N 41
RX3 C22 H222 SING N N 42
RX3 C17 P1 SING N N 43
RX3 C17 H17 SING N N 44
RX3 P1 O3 DOUB N N 45
RX3 P1 O4 SING N N 46
RX3 P1 C9 SING N N 47
RX3 O4 HO4 SING N N 48
RX3 C9 C10 SING N N 49
RX3 C9 N1 SING N N 50
RX3 C9 H9 SING N N 51
RX3 C10 C11 SING N N 52
RX3 C10 H101 SING N N 53
RX3 C10 H102 SING N N 54
RX3 C11 C12 DOUB Y N 55
RX3 C11 C13 SING Y N 56
RX3 C13 C15 DOUB Y N 57
RX3 C13 H13 SING N N 58
RX3 C15 C16 SING Y N 59
RX3 C15 H15 SING N N 60
RX3 C16 C14 DOUB Y N 61
RX3 C16 H16 SING N N 62
RX3 C14 C12 SING Y N 63
RX3 C14 H14 SING N N 64
RX3 C12 H12 SING N N 65
RX3 N1 C1 SING N N 66
RX3 N1 HN1 SING N N 67
RX3 C1 O2 DOUB N N 68
RX3 C1 O1 SING N N 69
RX3 O1 C2 SING N N 70
RX3 C2 C3 SING N N 71
RX3 C2 H21 SING N N 72
RX3 C2 H22 SING N N 73
RX3 C3 C4 SING Y N 74
RX3 C3 C5 DOUB Y N 75
RX3 C4 C6 DOUB Y N 76
RX3 C4 H4 SING N N 77
RX3 C5 C7 SING Y N 78
RX3 C5 H5 SING N N 79
RX3 C7 C8 DOUB Y N 80
RX3 C7 H7 SING N N 81
RX3 C8 C6 SING Y N 82
RX3 C8 H8 SING N N 83
RX3 C6 H6 SING N N 84
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
RX3 SMILES ACDLabs 10.04 O=C(OCc1ccccc1)NC(Cc2ccccc2)P(=O)(O)C5CCCC5C(=O)NC(C(=O)O)Cc4c3ccccc3nc4
RX3 SMILES_CANONICAL CACTVS 3.341 OC(=O)[C@H](Cc1c[nH]c2ccccc12)NC(=O)[C@@H]3CCC[C@H]3[P@@](O)(=O)[C@H](Cc4ccccc4)NC(=O)OCc5ccccc5
RX3 SMILES CACTVS 3.341 OC(=O)[CH](Cc1c[nH]c2ccccc12)NC(=O)[CH]3CCC[CH]3[P](O)(=O)[CH](Cc4ccccc4)NC(=O)OCc5ccccc5
RX3 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 c1ccc(cc1)CC(NC(=O)OCc2ccccc2)[P@](=O)(C3CCC[C@H]3C(=O)N[C@@H](Cc4c[nH]c5c4cccc5)C(=O)O)O
RX3 SMILES "OpenEye OEToolkits" 1.5.0 c1ccc(cc1)CC(NC(=O)OCc2ccccc2)P(=O)(C3CCCC3C(=O)NC(Cc4c[nH]c5c4cccc5)C(=O)O)O
RX3 InChI InChI 1.03 InChI=1S/C33H36N3O7P/c37-31(35-28(32(38)39)19-24-20-34-27-16-8-7-14-25(24)27)26-15-9-17-29(26)44(41,42)30(18-22-10-3-1-4-11-22)36-33(40)43-21-23-12-5-2-6-13-23/h1-8,10-14,16,20,26,28-30,34H,9,15,17-19,21H2,(H,35,37)(H,36,40)(H,38,39)(H,41,42)/t26-,28+,29-,30-/m1/s1
RX3 InChIKey InChI 1.03 IMPJIKIXNAGRCR-RRFVUZEHSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
RX3 "SYSTEMATIC NAME" ACDLabs 10.04 N-({(1S,2R)-2-[(S)-[(1R)-1-{[(benzyloxy)carbonyl]amino}-2-phenylethyl](hydroxy)phosphoryl]cyclopentyl}carbonyl)-L-tryptophan
RX3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S)-2-[[(1S)-2-[hydroxy-(2-phenyl-1-phenylmethoxycarbonylamino-ethyl)phosphoryl]cyclopentyl]carbonylamino]-3-(1H-indol-3-yl)propanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
RX3 'Create component' 2007-01-04 RCSB
RX3 'Modify subcomponent list' 2008-03-08 EBI
RX3 'Modify processing site' 2008-03-08 EBI
RX3 'Modify synonyms' 2008-03-08 EBI
RX3 'Modify descriptor' 2011-06-04 RCSB
RX3 'Modify subcomponent list' 2012-04-02 RCSB
RX3 'Modify synonyms' 2020-06-05 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id RX3
_pdbx_chem_comp_synonyms.name RXPA380
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_synonyms.comp_id RX3
_pdbe_chem_comp_synonyms.name RXPA380
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
RX3 C1 C 16.733 2.090 1
RX3 O2 O 15.521 2.974 2
RX3 O1 O 18.104 2.698 3
RX3 C2 C 18.264 4.190 4
RX3 C3 C 19.635 4.797 5
RX3 C4 C 20.847 3.913 6
RX3 C6 C 22.218 4.521 7
RX3 C8 C 22.378 6.013 8
RX3 C7 C 21.166 6.896 9
RX3 C5 C 19.794 6.289 10
RX3 O3 O 14.874 2.087 11
RX3 P1 P 13.990 0.875 12
RX3 O4 O 13.107 -0.337 13
RX3 C9 C 15.202 -0.009 14
RX3 N1 N 16.574 0.599 15
RX3 C10 C 15.043 -1.500 16
RX3 C11 C 16.255 -2.384 17
RX3 C12 C 17.626 -1.776 18
RX3 C14 C 18.838 -2.660 19
RX3 C16 C 18.679 -4.152 20
RX3 C15 C 17.308 -4.760 21
RX3 C13 C 16.096 -3.876 22
RX3 C19 C 10.885 -0.128 23
RX3 O5 O 11.887 -1.245 24
RX3 C18 C 11.351 1.298 25
RX3 C20 C 10.471 2.513 26
RX3 C21 C 11.355 3.725 27
RX3 C22 C 12.781 3.259 28
RX3 C17 C 12.778 1.759 29
RX3 N2 N 9.417 -0.438 30
RX3 C23 C 8.951 -1.863 31
RX3 C24 C 9.953 -2.980 32
RX3 O6 O 9.487 -4.405 33
RX3 C25 C 7.483 -2.173 34
RX3 C26 C 7.018 -3.598 35
RX3 C27 C 7.893 -4.806 36
RX3 C28 C 5.598 -4.056 37
RX3 N3 N 7.018 -6.013 38
RX3 C29 C 5.598 -5.556 39
RX3 C30 C 4.299 -3.306 40
RX3 C31 C 4.299 -6.306 41
RX3 C32 C 3.000 -4.056 42
RX3 C33 C 3.000 -5.556 43
RX3 OXT O 11.421 -2.670 44
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
RX3 OXT C24 SINGLE NONE 1
RX3 C24 O6 DOUBLE NONE 2
RX3 C24 C23 SINGLE NONE 3
RX3 C23 C25 SINGLE BEGINDASH 4
RX3 C23 N2 SINGLE NONE 5
RX3 C25 C26 SINGLE NONE 6
RX3 C26 C27 DOUBLE NONE 7
RX3 C26 C28 SINGLE NONE 8
RX3 C28 C29 DOUBLE NONE 9
RX3 C28 C30 SINGLE NONE 10
RX3 C30 C32 DOUBLE NONE 11
RX3 C32 C33 SINGLE NONE 12
RX3 C33 C31 DOUBLE NONE 13
RX3 C31 C29 SINGLE NONE 14
RX3 C29 N3 SINGLE NONE 15
RX3 N3 C27 SINGLE NONE 16
RX3 N2 C19 SINGLE NONE 17
RX3 C19 O5 DOUBLE NONE 18
RX3 C18 C19 SINGLE BEGINDASH 19
RX3 C18 C20 SINGLE NONE 20
RX3 C18 C17 SINGLE NONE 21
RX3 C20 C21 SINGLE NONE 22
RX3 C21 C22 SINGLE NONE 23
RX3 C17 C22 SINGLE BEGINWEDGE 24
RX3 C17 P1 SINGLE NONE 25
RX3 P1 O3 DOUBLE NONE 26
RX3 P1 O4 SINGLE BEGINDASH 27
RX3 P1 C9 SINGLE NONE 28
RX3 C9 C10 SINGLE BEGINWEDGE 29
RX3 C9 N1 SINGLE NONE 30
RX3 C10 C11 SINGLE NONE 31
RX3 C11 C12 DOUBLE NONE 32
RX3 C11 C13 SINGLE NONE 33
RX3 C13 C15 DOUBLE NONE 34
RX3 C15 C16 SINGLE NONE 35
RX3 C16 C14 DOUBLE NONE 36
RX3 C14 C12 SINGLE NONE 37
RX3 N1 C1 SINGLE NONE 38
RX3 C1 O2 DOUBLE NONE 39
RX3 C1 O1 SINGLE NONE 40
RX3 O1 C2 SINGLE NONE 41
RX3 C2 C3 SINGLE NONE 42
RX3 C3 C4 DOUBLE NONE 43
RX3 C3 C5 SINGLE NONE 44
RX3 C4 C6 SINGLE NONE 45
RX3 C5 C7 DOUBLE NONE 46
RX3 C7 C8 SINGLE NONE 47
RX3 C8 C6 DOUBLE NONE 48
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
RX3 MurckoScaffold S1 scaffold 'O=C(N[C@@H](Cc1ccccc1)[PH](=O)[C@@H]1CCC[C@H]1C(=O)NCCc1c[nH]c2ccccc12)OCc1ccccc1' InChI=1S/C32H36N3O4P/c36-31(33-19-18-25-21-34-28-16-8-7-14-26(25)28)27-15-9-17-29(27)40(38)30(20-23-10-3-1-4-11-23)35-32(37)39-22-24-12-5-2-6-13-24/h1-8,10-14,16,21,27,29-30,34,40H,9,15,17-20,22H2,(H,33,36)(H,35,37)/t27-,29-,30-/m1/s1 DKZMDBSUUHLOJW-MJLPRTPSSA-N
RX3 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
RX3 cyclopentane F2 fragment C1CCCC1 InChI=1S/C5H10/c1-2-4-5-3-1/h1-5H2 RGSFGYAAUTVSQA-UHFFFAOYSA-N
RX3 indole F3 fragment 'c1ccc2[nH]ccc2c1' InChI=1S/C8H7N/c1-2-4-8-7(3-1)5-6-9-8/h1-6,9H SIKJAQJRHWYJAI-UHFFFAOYSA-N
RX3 peptide F4 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
RX3 phenyl F5 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
RX3 pyrrole F6 fragment 'c1cc[nH]c1' InChI=1S/C4H5N/c1-2-4-5-3-1/h1-5H KAESVJOAVNADME-UHFFFAOYSA-N
RX3 Z1238477790 F7 fragment CC(NC(=O)C1CCCC1)C(=O)O InChI=1S/C9H15NO3/c1-6(9(12)13)10-8(11)7-4-2-3-5-7/h6-7H,2-5H2,1H3,(H,10,11)(H,12,13) WLHVFWMGYCZXDM-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
RX3 C1 S1 1
RX3 O2 S1 1
RX3 O1 S1 1
RX3 C2 S1 1
RX3 C3 S1 1
RX3 C4 S1 1
RX3 C6 S1 1
RX3 C8 S1 1
RX3 C7 S1 1
RX3 C5 S1 1
RX3 O3 S1 1
RX3 P1 S1 1
RX3 C9 S1 1
RX3 N1 S1 1
RX3 C10 S1 1
RX3 C11 S1 1
RX3 C12 S1 1
RX3 C14 S1 1
RX3 C16 S1 1
RX3 C15 S1 1
RX3 C13 S1 1
RX3 C19 S1 1
RX3 O5 S1 1
RX3 C18 S1 1
RX3 C20 S1 1
RX3 C21 S1 1
RX3 C22 S1 1
RX3 C17 S1 1
RX3 N2 S1 1
RX3 C23 S1 1
RX3 C25 S1 1
RX3 C26 S1 1
RX3 C27 S1 1
RX3 C28 S1 1
RX3 N3 S1 1
RX3 C29 S1 1
RX3 C30 S1 1
RX3 C31 S1 1
RX3 C32 S1 1
RX3 C33 S1 1
RX3 N2 F1 1
RX3 C19 F1 1
RX3 O5 F1 1
RX3 C18 F1 1
RX3 C18 F2 1
RX3 C20 F2 1
RX3 C21 F2 1
RX3 C22 F2 1
RX3 C17 F2 1
RX3 C29 F3 1
RX3 C28 F3 1
RX3 C26 F3 1
RX3 C27 F3 1
RX3 N3 F3 1
RX3 C30 F3 1
RX3 C32 F3 1
RX3 C33 F3 1
RX3 C31 F3 1
RX3 O6 F4 1
RX3 C24 F4 1
RX3 C23 F4 1
RX3 N2 F4 1
RX3 C3 F5 1
RX3 C4 F5 1
RX3 C6 F5 1
RX3 C8 F5 1
RX3 C7 F5 1
RX3 C5 F5 1
RX3 C11 F5 2
RX3 C12 F5 2
RX3 C14 F5 2
RX3 C16 F5 2
RX3 C15 F5 2
RX3 C13 F5 2
RX3 C28 F5 3
RX3 C29 F5 3
RX3 C31 F5 3
RX3 C33 F5 3
RX3 C32 F5 3
RX3 C30 F5 3
RX3 C27 F6 1
RX3 C26 F6 1
RX3 C28 F6 1
RX3 C29 F6 1
RX3 N3 F6 1
RX3 C25 F7 1
RX3 C23 F7 1
RX3 N2 F7 1
RX3 C19 F7 1
RX3 O5 F7 1
RX3 C18 F7 1
RX3 C20 F7 1
RX3 C21 F7 1
RX3 C22 F7 1
RX3 C17 F7 1
RX3 C24 F7 1
RX3 O6 F7 1
RX3 OXT F7 1
#
_pdbe_chem_comp_rdkit_properties.comp_id RX3
_pdbe_chem_comp_rdkit_properties.exactmw 617.229
_pdbe_chem_comp_rdkit_properties.amw 617.639
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 10
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 5
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 13
_pdbe_chem_comp_rdkit_properties.NumHBD 5
_pdbe_chem_comp_rdkit_properties.NumHBA 7
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 44
_pdbe_chem_comp_rdkit_properties.NumAtoms 80
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 11
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.303
_pdbe_chem_comp_rdkit_properties.NumRings 5
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 4
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 5
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 305.764
_pdbe_chem_comp_rdkit_properties.tpsa 157.820
_pdbe_chem_comp_rdkit_properties.CrippenClogP 4.622
_pdbe_chem_comp_rdkit_properties.CrippenMR 163.216
_pdbe_chem_comp_rdkit_properties.chi0v 22.041
_pdbe_chem_comp_rdkit_properties.chi1v 13.003
_pdbe_chem_comp_rdkit_properties.chi2v 6.608
_pdbe_chem_comp_rdkit_properties.chi3v 6.608
_pdbe_chem_comp_rdkit_properties.chi4v 4.415
_pdbe_chem_comp_rdkit_properties.chi0n 57.147
_pdbe_chem_comp_rdkit_properties.chi1n 29.037
_pdbe_chem_comp_rdkit_properties.chi2n 4.914
_pdbe_chem_comp_rdkit_properties.chi3n 4.914
_pdbe_chem_comp_rdkit_properties.chi4n 3.082
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -4.400
_pdbe_chem_comp_rdkit_properties.kappa1 9.312
_pdbe_chem_comp_rdkit_properties.kappa2 13.926
_pdbe_chem_comp_rdkit_properties.kappa3 7.382
_pdbe_chem_comp_rdkit_properties.Phi 2.947
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
RX3 UniChem ChEMBL CHEMBL571716
RX3 UniChem PDBe RX3
RX3 UniChem SureChEMBL SCHEMBL17813758
RX3 UniChem PubChem 45485266
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
RX3 C1 3.062 -0.164 0.820 ETKDGv3 1
RX3 O2 3.413 1.028 1.038 ETKDGv3 2
RX3 O1 3.637 -1.215 1.543 ETKDGv3 3
RX3 C2 4.706 -1.034 2.467 ETKDGv3 4
RX3 C3 5.992 -0.774 1.731 ETKDGv3 5
RX3 C4 6.518 0.462 1.667 ETKDGv3 6
RX3 C6 7.771 0.699 0.919 ETKDGv3 7
RX3 C8 8.383 -0.315 0.297 ETKDGv3 8
RX3 C7 7.803 -1.673 0.350 ETKDGv3 9
RX3 C5 6.667 -1.890 1.025 ETKDGv3 10
RX3 O3 -0.858 1.477 -2.023 ETKDGv3 11
RX3 P1 -0.311 0.417 -1.094 ETKDGv3 12
RX3 O4 -0.752 -1.110 -1.679 ETKDGv3 13
RX3 C9 1.515 0.555 -1.067 ETKDGv3 14
RX3 N1 2.075 -0.460 -0.174 ETKDGv3 15
RX3 C10 2.090 0.385 -2.481 ETKDGv3 16
RX3 C11 3.587 0.567 -2.485 ETKDGv3 17
RX3 C12 4.127 1.800 -2.481 ETKDGv3 18
RX3 C14 5.595 1.968 -2.432 ETKDGv3 19
RX3 C16 6.392 0.895 -2.381 ETKDGv3 20
RX3 C15 5.807 -0.460 -2.369 ETKDGv3 21
RX3 C13 4.478 -0.618 -2.414 ETKDGv3 22
RX3 C19 -1.992 -1.566 1.350 ETKDGv3 23
RX3 O5 -1.687 -2.744 1.020 ETKDGv3 24
RX3 C18 -0.899 -0.537 1.502 ETKDGv3 25
RX3 C20 -0.842 0.059 2.918 ETKDGv3 26
RX3 C21 -0.886 1.576 2.758 ETKDGv3 27
RX3 C22 -0.546 1.855 1.304 ETKDGv3 28
RX3 C17 -1.092 0.654 0.550 ETKDGv3 29
RX3 N2 -3.368 -1.208 1.553 ETKDGv3 30
RX3 C23 -4.472 -2.091 1.160 ETKDGv3 31
RX3 C24 -4.446 -2.336 -0.325 ETKDGv3 32
RX3 O6 -4.824 -3.447 -0.786 ETKDGv3 33
RX3 C25 -5.837 -1.528 1.612 ETKDGv3 34
RX3 C26 -6.205 -0.230 0.941 ETKDGv3 35
RX3 C27 -5.926 0.997 1.387 ETKDGv3 36
RX3 C28 -6.892 -0.065 -0.339 ETKDGv3 37
RX3 N3 -6.388 1.985 0.466 ETKDGv3 38
RX3 C29 -6.976 1.229 -0.581 ETKDGv3 39
RX3 C30 -7.450 -1.057 -1.275 ETKDGv3 40
RX3 C31 -7.617 1.743 -1.802 ETKDGv3 41
RX3 C32 -8.039 -0.610 -2.399 ETKDGv3 42
RX3 C33 -8.125 0.855 -2.675 ETKDGv3 43
RX3 OXT -4.042 -1.327 -1.196 ETKDGv3 44
RX3 H21 4.464 -0.213 3.179 ETKDGv3 45
RX3 H22 4.817 -1.962 3.066 ETKDGv3 46
RX3 H4 6.036 1.297 2.160 ETKDGv3 47
RX3 H6 8.190 1.696 0.873 ETKDGv3 48
RX3 H8 9.298 -0.142 -0.254 ETKDGv3 49
RX3 H7 8.295 -2.488 -0.164 ETKDGv3 50
RX3 H5 6.243 -2.886 1.053 ETKDGv3 51
RX3 HO4 -0.619 -1.060 -2.659 ETKDGv3 52
RX3 H9 1.764 1.578 -0.712 ETKDGv3 53
RX3 HN1 1.844 -1.464 -0.351 ETKDGv3 54
RX3 H101 1.837 -0.624 -2.873 ETKDGv3 55
RX3 H102 1.629 1.128 -3.167 ETKDGv3 56
RX3 H12 3.496 2.680 -2.506 ETKDGv3 57
RX3 H14 6.022 2.963 -2.434 ETKDGv3 58
RX3 H16 7.467 1.018 -2.345 ETKDGv3 59
RX3 H15 6.454 -1.326 -2.320 ETKDGv3 60
RX3 H13 4.057 -1.615 -2.394 ETKDGv3 61
RX3 H18 0.077 -1.025 1.305 ETKDGv3 62
RX3 H201 0.112 -0.236 3.410 ETKDGv3 63
RX3 H202 -1.679 -0.283 3.566 ETKDGv3 64
RX3 H17 -2.176 0.834 0.376 ETKDGv3 65
RX3 H211 -0.169 2.079 3.443 ETKDGv3 66
RX3 H212 -1.914 1.944 2.974 ETKDGv3 67
RX3 H221 -1.008 2.803 0.953 ETKDGv3 68
RX3 H222 0.558 1.923 1.209 ETKDGv3 69
RX3 HN2 -3.574 -0.284 1.993 ETKDGv3 70
RX3 H23 -4.332 -3.066 1.678 ETKDGv3 71
RX3 H251 -6.629 -2.277 1.401 ETKDGv3 72
RX3 H252 -5.822 -1.380 2.714 ETKDGv3 73
RX3 H27 -5.418 1.226 2.314 ETKDGv3 74
RX3 HN3 -6.307 3.023 0.544 ETKDGv3 75
RX3 H30 -7.389 -2.117 -1.066 ETKDGv3 76
RX3 H31 -7.677 2.807 -1.992 ETKDGv3 77
RX3 H32 -8.456 -1.314 -3.107 ETKDGv3 78
RX3 H33 -8.602 1.201 -3.583 ETKDGv3 79
RX3 HOXT -4.037 -1.475 -2.197 ETKDGv3 80
#