data_RXK
#
_chem_comp.id RXK
_chem_comp.name "cyclohexanecarboxylic acid"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C7 H12 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2020-10-30
_chem_comp.pdbx_modified_date 2021-02-26
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 128.169
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code RXK
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag Y
_chem_comp.pdbx_model_coordinates_db_code 7ATQ
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
RXK C01 C1 C 0 1 N N N N N N -12.586 -30.527 -42.813 ? ? ? C01 RXK 1
RXK O01 O1 O 0 1 N N N N N N -9.376 -33.318 -39.778 ? ? ? O01 RXK 2
RXK C02 C2 C 0 1 N N N N N N -12.341 -32.026 -42.630 ? ? ? C02 RXK 3
RXK O02 O2 O 0 1 N N N N N N -8.922 -31.267 -39.249 ? ? ? O02 RXK 4
RXK C03 C3 C 0 1 N N N N N N -11.063 -32.549 -41.986 ? ? ? C03 RXK 5
RXK C04 C4 C 0 1 N N N N N N -10.195 -31.510 -41.262 ? ? ? C04 RXK 6
RXK C05 C5 C 0 1 N N N N N N -10.939 -30.232 -40.824 ? ? ? C05 RXK 7
RXK C06 C6 C 0 1 N N N N N N -12.002 -29.621 -41.746 ? ? ? C06 RXK 8
RXK C07 C7 C 0 1 N N N N N N -9.462 -32.085 -40.035 ? ? ? C07 RXK 9
RXK H1 H1 H 0 1 N N N N N N -12.152 -30.231 -43.780 ? ? ? H1 RXK 10
RXK H2 H2 H 0 1 N N N N N N -13.674 -30.364 -42.834 ? ? ? H2 RXK 11
RXK H3 H3 H 0 1 N N N N N N -13.174 -32.405 -42.020 ? ? ? H3 RXK 12
RXK H4 H4 H 0 1 N N N N N N -8.506 -31.739 -38.537 ? ? ? H4 RXK 13
RXK H5 H5 H 0 1 N N N N N N -10.450 -33.005 -42.778 ? ? ? H5 RXK 14
RXK H6 H6 H 0 1 N N N N N N -9.418 -31.194 -41.974 ? ? ? H6 RXK 15
RXK H7 H7 H 0 1 N N N N N N -10.175 -29.458 -40.660 ? ? ? H7 RXK 16
RXK H8 H8 H 0 1 N N N N N N -11.437 -30.463 -39.871 ? ? ? H8 RXK 17
RXK H9 H9 H 0 1 N N N N N N -11.545 -28.759 -42.255 ? ? ? H9 RXK 18
RXK H10 H10 H 0 1 N N N N N N -12.832 -29.275 -41.113 ? ? ? H10 RXK 19
RXK H11 H11 H 0 1 N N N N N N -12.389 -32.473 -43.634 ? ? ? H11 RXK 20
RXK H12 H12 H 0 1 N N N N N N -11.347 -33.318 -41.253 ? ? ? H12 RXK 21
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
RXK C01 C02 SING N N 1
RXK C01 C06 SING N N 2
RXK C03 C04 SING N N 3
RXK C06 C05 SING N N 4
RXK C04 C05 SING N N 5
RXK C04 C07 SING N N 6
RXK C07 O01 DOUB N N 7
RXK C07 O02 SING N N 8
RXK C01 H1 SING N N 9
RXK C01 H2 SING N N 10
RXK C02 H3 SING N N 11
RXK O02 H4 SING N N 12
RXK C03 H5 SING N N 13
RXK C04 H6 SING N N 14
RXK C05 H7 SING N N 15
RXK C05 H8 SING N N 16
RXK C06 H9 SING N N 17
RXK C06 H10 SING N N 18
RXK C02 C03 SING N N 19
RXK C02 H11 SING N N 20
RXK C03 H12 SING N N 21
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
RXK InChI InChI 1.03 InChI=1S/C7H12O2/c8-7(9)6-4-2-1-3-5-6/h6H,1-5H2,(H,8,9)
RXK InChIKey InChI 1.03 NZNMSOFKMUBTKW-UHFFFAOYSA-N
RXK SMILES_CANONICAL CACTVS 3.385 OC(=O)C1CCCCC1
RXK SMILES CACTVS 3.385 OC(=O)C1CCCCC1
RXK SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 C1CCC(CC1)C(=O)O
RXK SMILES "OpenEye OEToolkits" 2.0.7 C1CCC(CC1)C(=O)O
#
_pdbx_chem_comp_identifier.comp_id RXK
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "cyclohexanecarboxylic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
RXK 'Create component' 2020-10-30 PDBE
RXK 'Initial release' 2021-03-03 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
RXK C01 C 4.299 -3.090 1
RXK O01 O 5.598 2.160 2
RXK C02 C 3.000 -2.340 3
RXK O02 O 3.000 2.160 4
RXK C03 C 3.000 -0.840 5
RXK C04 C 4.299 -0.090 6
RXK C05 C 5.598 -0.840 7
RXK C06 C 5.598 -2.340 8
RXK C07 C 4.299 1.410 9
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
RXK C01 C02 SINGLE NONE 1
RXK C01 C06 SINGLE NONE 2
RXK C03 C04 SINGLE NONE 3
RXK C06 C05 SINGLE NONE 4
RXK C04 C05 SINGLE NONE 5
RXK C04 C07 SINGLE NONE 6
RXK C07 O01 DOUBLE NONE 7
RXK C07 O02 SINGLE NONE 8
RXK C02 C03 SINGLE NONE 9
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
RXK MurckoScaffold S1 scaffold C1CCCCC1 InChI=1S/C6H12/c1-2-4-6-5-3-1/h1-6H2 XDTMQSROBMDMFD-UHFFFAOYSA-N
RXK cyclohexane F1 fragment C1CCCCC1 InChI=1S/C6H12/c1-2-4-6-5-3-1/h1-6H2 XDTMQSROBMDMFD-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
RXK C01 S1 1
RXK C02 S1 1
RXK C03 S1 1
RXK C04 S1 1
RXK C05 S1 1
RXK C06 S1 1
RXK C01 F1 1
RXK C02 F1 1
RXK C03 F1 1
RXK C04 F1 1
RXK C05 F1 1
RXK C06 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id RXK
_pdbe_chem_comp_rdkit_properties.exactmw 128.084
_pdbe_chem_comp_rdkit_properties.amw 128.171
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 2
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 1
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 2
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 9
_pdbe_chem_comp_rdkit_properties.NumAtoms 21
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 2
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.857
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 71.825
_pdbe_chem_comp_rdkit_properties.tpsa 37.300
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.651
_pdbe_chem_comp_rdkit_properties.CrippenMR 34.211
_pdbe_chem_comp_rdkit_properties.chi0v 4.316
_pdbe_chem_comp_rdkit_properties.chi1v 2.158
_pdbe_chem_comp_rdkit_properties.chi2v 0.704
_pdbe_chem_comp_rdkit_properties.chi3v 0.704
_pdbe_chem_comp_rdkit_properties.chi4v 0.352
_pdbe_chem_comp_rdkit_properties.chi0n 16.316
_pdbe_chem_comp_rdkit_properties.chi1n 8.066
_pdbe_chem_comp_rdkit_properties.chi2n 0.704
_pdbe_chem_comp_rdkit_properties.chi3n 0.704
_pdbe_chem_comp_rdkit_properties.chi4n 0.352
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.530
_pdbe_chem_comp_rdkit_properties.kappa1 1.128
_pdbe_chem_comp_rdkit_properties.kappa2 2.853
_pdbe_chem_comp_rdkit_properties.kappa3 1.699
_pdbe_chem_comp_rdkit_properties.Phi 0.358
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
RXK UniChem PDBe RXK
RXK UniChem 'KEGG LIGAND' C09822
RXK UniChem ChEBI 36096
RXK UniChem ZINC ZINC000012358763
RXK UniChem eMolecules 477702
RXK UniChem fdasrs H9VKD9VL18
RXK UniChem HMDB HMDB0031342
RXK UniChem NMRShiftDB 20202458
RXK UniChem BRENDA 145429
RXK UniChem BRENDA 159385
RXK UniChem BRENDA 48935
RXK UniChem BRENDA 54682
RXK UniChem BRENDA 55507
RXK UniChem ChemicalBook CB0332732
RXK UniChem MedChemExpress HY-Y1373
RXK UniChem 'Probes And Drugs' PD124012
RXK UniChem SureChEMBL SCHEMBL6501
RXK UniChem 'PubChem TPHARMA' 15321340
RXK UniChem PubChem 7413
RXK UniChem Mcule MCULE-2193918964
RXK UniChem ACTor 98-89-5
RXK UniChem Nikkaji J38.185C
RXK UniChem 'EPA CompTox Dashboard' DTXSID8059180
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
RXK C01 -1.806 -0.555 0.564 ETKDGv3 1
RXK O01 3.081 0.821 -1.127 ETKDGv3 2
RXK C02 -1.381 -0.839 -0.892 ETKDGv3 3
RXK O02 2.562 -0.205 0.860 ETKDGv3 4
RXK C03 0.142 -0.835 -1.047 ETKDGv3 5
RXK C04 0.738 0.549 -0.694 ETKDGv3 6
RXK C05 -0.047 1.279 0.430 ETKDGv3 7
RXK C06 -0.789 0.299 1.347 ETKDGv3 8
RXK C07 2.193 0.406 -0.335 ETKDGv3 9
RXK H1 -1.947 -1.519 1.101 ETKDGv3 10
RXK H2 -2.790 -0.038 0.552 ETKDGv3 11
RXK H3 -1.786 -1.824 -1.212 ETKDGv3 12
RXK H4 3.538 -0.313 1.108 ETKDGv3 13
RXK H5 0.563 -1.628 -0.388 ETKDGv3 14
RXK H6 0.671 1.187 -1.604 ETKDGv3 15
RXK H7 -0.797 1.958 -0.033 ETKDGv3 16
RXK H8 0.629 1.919 1.039 ETKDGv3 17
RXK H9 -0.049 -0.366 1.843 ETKDGv3 18
RXK H10 -1.317 0.865 2.145 ETKDGv3 19
RXK H11 -1.814 -0.065 -1.563 ETKDGv3 20
RXK H12 0.408 -1.097 -2.095 ETKDGv3 21
#