data_RXO
#
_chem_comp.id RXO
_chem_comp.name 4-arsanyl-2-nitrophenol
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C6 H6 As N O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2014-02-04
_chem_comp.pdbx_modified_date 2014-05-16
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 215.038
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code RXO
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4KU9
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
RXO AS AS AS 0 0 N N N N N N 20.691 2.282 -19.621 2.771 0.307 -0.005 AS RXO 1
RXO C1 C1 C 0 1 Y N N N N N 22.091 0.949 -19.773 0.885 -0.328 -0.007 C1 RXO 2
RXO C2 C2 C 0 1 Y N N N N N 21.756 -0.371 -19.483 -0.151 0.587 -0.010 C2 RXO 3
RXO C6 C6 C 0 1 Y N N N N N 23.402 1.333 -20.144 0.614 -1.684 -0.011 C6 RXO 4
RXO C5 C5 C 0 1 Y N N N N N 24.429 0.391 -20.261 -0.694 -2.128 -0.012 C5 RXO 5
RXO C4 C4 C 0 1 Y N N N N N 24.138 -0.952 -19.968 -1.736 -1.212 -0.009 C4 RXO 6
RXO O3 O3 O 0 1 N N N N N N 25.104 -1.916 -20.037 -3.024 -1.646 -0.011 O3 RXO 7
RXO C3 C3 C 0 1 Y N N N N N 22.750 -1.332 -19.565 -1.461 0.148 -0.011 C3 RXO 8
RXO N1 N1 N 1 1 N N N N N N 22.446 -2.670 -19.312 -2.570 1.128 -0.009 N1 RXO 9
RXO O2 O2 O -1 1 N N N N N N 21.402 -2.979 -18.726 -2.328 2.322 -0.010 O2 RXO 10
RXO O1 O1 O 0 1 N N N N N N 23.217 -3.529 -19.740 -3.725 0.741 -0.005 O1 RXO 11
RXO H1 H1 H 0 1 N N N N N N 19.391 1.608 -19.212 3.271 0.479 1.495 H1 RXO 12
RXO H2 H2 H 0 1 N N N N N N 21.081 3.309 -18.571 3.689 -0.755 -0.751 H2 RXO 13
RXO H3 H3 H 0 1 N N N N N N 20.748 -0.638 -19.202 0.064 1.645 -0.011 H3 RXO 14
RXO H4 H4 H 0 1 N N N N N N 23.613 2.374 -20.341 1.425 -2.397 -0.013 H4 RXO 15
RXO H5 H5 H 0 1 N N N N N N 25.421 0.688 -20.569 -0.906 -3.187 -0.015 H5 RXO 16
RXO H6 H6 H 0 1 N N N N N N 24.704 -2.773 -19.950 -3.397 -1.774 0.872 H6 RXO 17
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
RXO C5 C6 DOUB Y N 1
RXO C5 C4 SING Y N 2
RXO C6 C1 SING Y N 3
RXO O3 C4 SING N N 4
RXO C4 C3 DOUB Y N 5
RXO C1 AS SING N N 6
RXO C1 C2 DOUB Y N 7
RXO O1 N1 DOUB N N 8
RXO C3 C2 SING Y N 9
RXO C3 N1 SING N N 10
RXO N1 O2 SING N N 11
RXO AS H1 SING N N 12
RXO AS H2 SING N N 13
RXO C2 H3 SING N N 14
RXO C6 H4 SING N N 15
RXO C5 H5 SING N N 16
RXO O3 H6 SING N N 17
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
RXO SMILES ACDLabs 12.01 O=[N+]([O-])c1cc(ccc1O)[AsH2]
RXO InChI InChI 1.03 InChI=1S/C6H6AsNO3/c7-4-1-2-6(9)5(3-4)8(10)11/h1-3,9H,7H2
RXO InChIKey InChI 1.03 POYWCBSQXBGKKH-UHFFFAOYSA-N
RXO SMILES_CANONICAL CACTVS 3.385 Oc1ccc([AsH2])cc1[N+]([O-])=O
RXO SMILES CACTVS 3.385 Oc1ccc([AsH2])cc1[N+]([O-])=O
RXO SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 c1cc(c(cc1[AsH2])[N+](=O)[O-])O
RXO SMILES "OpenEye OEToolkits" 1.7.6 c1cc(c(cc1[AsH2])[N+](=O)[O-])O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
RXO "SYSTEMATIC NAME" ACDLabs 12.01 4-arsanyl-2-nitrophenol
RXO "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 4-arsanyl-2-nitro-phenol
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
RXO 'Create component' 2014-02-04 RCSB
RXO 'Initial release' 2014-05-21 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
RXO AS As 9.002 -2.160 1
RXO C1 C 7.702 -1.410 2
RXO C2 C 7.702 0.090 3
RXO C6 C 6.404 -2.160 4
RXO C5 C 5.104 -1.410 5
RXO C4 C 5.104 0.090 6
RXO O3 O 3.805 0.840 7
RXO C3 C 6.404 0.840 8
RXO N1 N 6.404 2.340 9
RXO O2 O 5.104 3.090 10
RXO O1 O 7.702 3.090 11
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
RXO C5 C6 SINGLE NONE 1
RXO C5 C4 DOUBLE NONE 2
RXO C6 C1 DOUBLE NONE 3
RXO O3 C4 SINGLE NONE 4
RXO C4 C3 SINGLE NONE 5
RXO C1 AS SINGLE NONE 6
RXO C1 C2 SINGLE NONE 7
RXO O1 N1 DOUBLE NONE 8
RXO C3 C2 DOUBLE NONE 9
RXO C3 N1 SINGLE NONE 10
RXO N1 O2 SINGLE NONE 11
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
RXO MurckoScaffold S1 scaffold c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
RXO phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
RXO C1 S1 1
RXO C2 S1 1
RXO C6 S1 1
RXO C5 S1 1
RXO C4 S1 1
RXO C3 S1 1
RXO C1 F1 1
RXO C6 F1 1
RXO C5 F1 1
RXO C4 F1 1
RXO C3 F1 1
RXO C2 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id RXO
_pdbe_chem_comp_rdkit_properties.exactmw 214.956
_pdbe_chem_comp_rdkit_properties.amw 215.040
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 3
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 11
_pdbe_chem_comp_rdkit_properties.NumAtoms 17
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 5
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 78.857
_pdbe_chem_comp_rdkit_properties.tpsa 63.370
_pdbe_chem_comp_rdkit_properties.CrippenClogP -1.284
_pdbe_chem_comp_rdkit_properties.CrippenMR 41.505
_pdbe_chem_comp_rdkit_properties.chi0v 6.996
_pdbe_chem_comp_rdkit_properties.chi1v 3.455
_pdbe_chem_comp_rdkit_properties.chi2v 1.398
_pdbe_chem_comp_rdkit_properties.chi3v 1.398
_pdbe_chem_comp_rdkit_properties.chi4v 0.843
_pdbe_chem_comp_rdkit_properties.chi0n 11.119
_pdbe_chem_comp_rdkit_properties.chi1n 5.319
_pdbe_chem_comp_rdkit_properties.chi2n 0.929
_pdbe_chem_comp_rdkit_properties.chi3n 0.929
_pdbe_chem_comp_rdkit_properties.chi4n 0.504
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.022
_pdbe_chem_comp_rdkit_properties.kappa1 3.151
_pdbe_chem_comp_rdkit_properties.kappa2 2.925
_pdbe_chem_comp_rdkit_properties.kappa3 1.713
_pdbe_chem_comp_rdkit_properties.Phi 0.838
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
RXO UniChem PDBe RXO
RXO UniChem PubChem 139033484
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
RXO AS 3.330 -0.232 0.283 ETKDGv3 1
RXO C1 1.388 0.172 0.055 ETKDGv3 2
RXO C2 0.468 -0.914 -0.147 ETKDGv3 3
RXO C6 0.953 1.452 0.090 ETKDGv3 4
RXO C5 -0.451 1.742 -0.053 ETKDGv3 5
RXO C4 -1.353 0.738 -0.217 ETKDGv3 6
RXO O3 -2.702 1.108 -0.354 ETKDGv3 7
RXO C3 -0.884 -0.667 -0.265 ETKDGv3 8
RXO N1 -1.812 -1.771 -0.474 ETKDGv3 9
RXO O2 -3.118 -1.633 -0.083 ETKDGv3 10
RXO O1 -1.471 -2.833 -1.055 ETKDGv3 11
RXO H1 3.863 0.667 1.424 ETKDGv3 12
RXO H2 3.480 -1.781 0.382 ETKDGv3 13
RXO H3 0.818 -1.944 -0.181 ETKDGv3 14
RXO H4 1.675 2.274 0.241 ETKDGv3 15
RXO H5 -0.844 2.791 -0.020 ETKDGv3 16
RXO H6 -3.339 0.830 0.374 ETKDGv3 17
#