data_RYW
#
_chem_comp.id RYW
_chem_comp.name
(2~{R})-2-[5-[5-chloranyl-2-(oxan-4-ylamino)pyrimidin-4-yl]-3-oxidanylidene-1~{H}-isoindol-2-yl]-~{N}-[(1~{S})-1-(3-fluoranyl-5-methoxy-phenyl)-2-oxidanyl-ethyl]propanamide
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C29 H31 Cl F N5 O5"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ASTX029
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2020-11-04
_chem_comp.pdbx_modified_date 2021-10-01
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 584.038
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code RYW
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7AUV
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
RYW C1 C1 C 0 1 N N N N N N -3.402 13.272 48.163 9.560 -4.435 0.942 C1 RYW 1
RYW C3 C2 C 0 1 Y N N N N N -2.265 11.243 48.758 8.098 -2.567 0.777 C3 RYW 2
RYW C5 C3 C 0 1 Y N N N N N -2.186 10.238 50.888 8.620 -0.886 -0.852 C5 RYW 3
RYW C7 C4 C 0 1 Y N N N N N -1.429 9.184 50.414 7.500 -0.167 -0.466 C7 RYW 4
RYW C8 C5 C 0 1 Y N N N N N -1.083 9.156 49.065 6.675 -0.652 0.531 C8 RYW 5
RYW C10 C6 C 0 1 N N S N N N -0.277 7.995 48.500 5.458 0.132 0.948 C10 RYW 6
RYW C11 C7 C 0 1 N N N N N N -1.170 6.777 48.350 5.877 1.258 1.895 C11 RYW 7
RYW C14 C8 C 0 1 N N N N N N 1.579 8.532 46.978 3.501 1.000 -0.215 C14 RYW 8
RYW C16 C9 C 0 1 N N R N N N 1.953 8.877 45.529 2.840 1.589 -1.434 C16 RYW 9
RYW N18 N1 N 0 1 N N N N N N 3.406 8.897 45.350 1.420 1.817 -1.158 N18 RYW 10
RYW C19 C10 C 0 1 N N N N N N 4.226 10.082 45.615 0.738 3.116 -1.208 C19 RYW 11
RYW C21 C11 C 0 1 Y N N N N N 6.838 10.192 45.443 -1.808 3.664 -0.731 C21 RYW 12
RYW C22 C12 C 0 1 Y N N N N N 7.996 9.473 45.236 -3.032 3.125 -0.380 C22 RYW 13
RYW C23 C13 C 0 1 Y N N N N N 7.965 8.103 44.959 -3.151 1.755 -0.146 C23 RYW 14
RYW C24 C14 C 0 1 Y N N N N N 6.720 7.453 44.937 -2.039 0.928 -0.266 C24 RYW 15
RYW C25 C15 C 0 1 Y N N N N N 5.554 8.182 45.174 -0.806 1.475 -0.621 C25 RYW 16
RYW C26 C16 C 0 1 N N N N N N 4.141 7.750 45.263 0.526 0.872 -0.821 C26 RYW 17
RYW C28 C17 C 0 1 Y N N N N N 9.254 7.394 44.747 -4.465 1.179 0.231 C28 RYW 18
RYW C36 C18 C 0 1 N N N N N N 11.049 10.572 40.385 -8.895 -4.532 0.282 C36 RYW 19
RYW C37 C19 C 0 1 N N N N N N 11.174 9.290 41.175 -7.521 -3.928 -0.018 C37 RYW 20
RYW C39 C20 C 0 1 Y N N N N N 10.835 5.647 45.011 -6.569 1.323 1.358 C39 RYW 21
RYW C40 C21 C 0 1 Y N N N N N 9.570 6.153 45.280 -5.353 1.902 1.032 C40 RYW 22
RYW O2 O1 O 0 1 N N N N N N -2.559 12.182 47.798 8.391 -3.745 1.388 O2 RYW 23
RYW C4 C22 C 0 1 Y N N N N N -2.623 11.275 50.099 8.920 -2.085 -0.232 C4 RYW 24
RYW F6 F1 F 0 1 N N N N N N -2.515 10.252 52.215 9.419 -0.416 -1.835 F6 RYW 25
RYW C9 C23 C 0 1 Y N N N N N -1.509 10.195 48.239 6.975 -1.847 1.157 C9 RYW 26
RYW O12 O2 O 0 1 N N N N N N -2.225 7.085 47.449 6.883 2.057 1.269 O12 RYW 27
RYW N13 N2 N 0 1 N N N N N N 0.291 8.294 47.184 4.816 0.704 -0.237 N13 RYW 28
RYW O15 O3 O 0 1 N N N N N N 2.425 8.479 47.881 2.850 0.792 0.787 O15 RYW 29
RYW C17 C24 C 0 1 N N N N N N 1.297 10.178 45.082 2.981 0.619 -2.609 C17 RYW 30
RYW C20 C25 C 0 1 Y N N N N N 5.612 9.549 45.422 -0.704 2.850 -0.851 C20 RYW 31
RYW O27 O4 O 0 1 N N N N N N 3.683 6.621 45.273 0.778 -0.311 -0.698 O27 RYW 32
RYW N29 N3 N 0 1 Y N N N N N 10.147 8.080 44.007 -4.819 -0.032 -0.193 N29 RYW 33
RYW C30 C26 C 0 1 Y N N N N N 11.352 7.510 43.823 -5.991 -0.548 0.142 C30 RYW 34
RYW N31 N4 N 0 1 N N N N N N 12.248 8.203 43.081 -6.327 -1.811 -0.316 N31 RYW 35
RYW C32 C27 C 0 1 N N N N N N 11.995 9.493 42.441 -7.619 -2.400 0.043 C32 RYW 36
RYW C33 C28 C 0 1 N N N N N N 13.304 10.207 42.118 -8.690 -1.929 -0.945 C33 RYW 37
RYW C34 C29 C 0 1 N N N N N N 13.027 11.441 41.293 -10.019 -2.611 -0.610 C34 RYW 38
RYW O35 O5 O 0 1 N N N N N N 12.338 11.122 40.078 -9.850 -4.029 -0.654 O35 RYW 39
RYW N38 N5 N 0 1 Y N N N N N 11.740 6.308 44.269 -6.850 0.112 0.904 N38 RYW 40
RYW CL1 CL1 CL 0 0 N N N N N N 8.468 5.223 46.243 -4.943 3.489 1.605 CL41 RYW 41
RYW H46 H1 H 0 1 N N N N N N -3.544 13.933 47.295 9.677 -5.357 1.511 H46 RYW 42
RYW H45 H2 H 0 1 N N N N N N -4.378 12.886 48.493 9.460 -4.672 -0.117 H45 RYW 43
RYW H44 H3 H 0 1 N N N N N N -2.935 13.838 48.983 10.434 -3.802 1.092 H44 RYW 44
RYW H48 H4 H 0 1 N N N N N N -1.111 8.395 51.079 7.267 0.769 -0.951 H48 RYW 45
RYW H42 H5 H 0 1 N N N N N N 0.534 7.754 49.203 4.757 -0.529 1.458 H42 RYW 46
RYW H50 H6 H 0 1 N N N N N N -1.589 6.504 49.330 5.012 1.879 2.127 H50 RYW 47
RYW H51 H7 H 0 1 N N N N N N -0.582 5.935 47.956 6.274 0.830 2.816 H51 RYW 48
RYW H43 H8 H 0 1 N N N N N N 1.547 8.076 44.894 3.318 2.535 -1.685 H43 RYW 49
RYW H58 H9 H 0 1 N N N N N N 4.005 10.889 44.901 1.182 3.800 -0.486 H58 RYW 50
RYW H57 H10 H 0 1 N N N N N N 4.078 10.449 46.641 0.805 3.535 -2.212 H57 RYW 51
RYW H59 H11 H 0 1 N N N N N N 6.887 11.256 45.621 -1.718 4.725 -0.912 H59 RYW 52
RYW H60 H12 H 0 1 N N N N N N 8.948 9.979 45.289 -3.897 3.766 -0.287 H60 RYW 53
RYW H61 H13 H 0 1 N N N N N N 6.665 6.393 44.737 -2.129 -0.132 -0.084 H61 RYW 54
RYW H69 H14 H 0 1 N N N N N N 10.479 11.303 40.977 -8.840 -5.618 0.198 H69 RYW 55
RYW H68 H15 H 0 1 N N N N N N 10.515 10.364 39.446 -9.199 -4.261 1.293 H68 RYW 56
RYW H70 H16 H 0 1 N N N N N N 10.168 8.942 41.453 -6.800 -4.276 0.722 H70 RYW 57
RYW H71 H17 H 0 1 N N N N N N 11.665 8.530 40.549 -7.198 -4.232 -1.014 H71 RYW 58
RYW H72 H18 H 0 1 N N N N N N 11.103 4.682 45.415 -7.278 1.854 1.974 H72 RYW 59
RYW H47 H19 H 0 1 N N N N N N -3.219 12.079 50.504 9.793 -2.646 -0.532 H47 RYW 60
RYW H49 H20 H 0 1 N N N N N N -1.251 10.187 47.190 6.334 -2.221 1.942 H49 RYW 61
RYW H52 H21 H 0 1 N N N N N N -2.789 6.327 47.350 7.196 2.792 1.814 H52 RYW 62
RYW H53 H22 H 0 1 N N N N N N -0.326 8.320 46.398 5.337 0.871 -1.038 H53 RYW 63
RYW H55 H23 H 0 1 N N N N N N 0.210 10.113 45.236 2.503 -0.328 -2.358 H55 RYW 64
RYW H54 H24 H 0 1 N N N N N N 1.701 11.014 45.672 2.503 1.045 -3.491 H54 RYW 65
RYW H56 H25 H 0 1 N N N N N N 1.507 10.347 44.015 4.038 0.449 -2.815 H56 RYW 66
RYW H62 H26 H 0 1 N N N N N N 12.513 7.586 42.340 -5.707 -2.305 -0.875 H62 RYW 67
RYW H63 H27 H 0 1 N N N N N N 11.417 10.128 43.129 -7.892 -2.093 1.053 H63 RYW 68
RYW H64 H28 H 0 1 N N N N N N 13.959 9.529 41.551 -8.806 -0.848 -0.869 H64 RYW 69
RYW H65 H29 H 0 1 N N N N N N 13.801 10.499 43.055 -8.391 -2.192 -1.960 H65 RYW 70
RYW H66 H30 H 0 1 N N N N N N 13.983 11.926 41.044 -10.338 -2.314 0.390 H66 RYW 71
RYW H67 H31 H 0 1 N N N N N N 12.408 12.133 41.883 -10.775 -2.311 -1.336 H67 RYW 72
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
RYW O35 C36 SING N N 1
RYW O35 C34 SING N N 2
RYW C36 C37 SING N N 3
RYW C37 C32 SING N N 4
RYW C34 C33 SING N N 5
RYW C33 C32 SING N N 6
RYW C32 N31 SING N N 7
RYW N31 C30 SING N N 8
RYW C30 N29 DOUB Y N 9
RYW C30 N38 SING Y N 10
RYW N29 C28 SING Y N 11
RYW N38 C39 DOUB Y N 12
RYW C28 C23 SING N N 13
RYW C28 C40 DOUB Y N 14
RYW C24 C23 DOUB Y N 15
RYW C24 C25 SING Y N 16
RYW C23 C22 SING Y N 17
RYW C39 C40 SING Y N 18
RYW C17 C16 SING N N 19
RYW C25 C26 SING N N 20
RYW C25 C20 DOUB Y N 21
RYW C22 C21 DOUB Y N 22
RYW C26 O27 DOUB N N 23
RYW C26 N18 SING N N 24
RYW C40 CL1 SING N N 25
RYW N18 C16 SING N N 26
RYW N18 C19 SING N N 27
RYW C20 C21 SING Y N 28
RYW C20 C19 SING N N 29
RYW C16 C14 SING N N 30
RYW C14 N13 SING N N 31
RYW C14 O15 DOUB N N 32
RYW N13 C10 SING N N 33
RYW O12 C11 SING N N 34
RYW O2 C1 SING N N 35
RYW O2 C3 SING N N 36
RYW C9 C3 DOUB Y N 37
RYW C9 C8 SING Y N 38
RYW C11 C10 SING N N 39
RYW C10 C8 SING N N 40
RYW C3 C4 SING Y N 41
RYW C8 C7 DOUB Y N 42
RYW C4 C5 DOUB Y N 43
RYW C7 C5 SING Y N 44
RYW C5 F6 SING N N 45
RYW C1 H46 SING N N 46
RYW C1 H45 SING N N 47
RYW C1 H44 SING N N 48
RYW C7 H48 SING N N 49
RYW C10 H42 SING N N 50
RYW C11 H50 SING N N 51
RYW C11 H51 SING N N 52
RYW C16 H43 SING N N 53
RYW C19 H58 SING N N 54
RYW C19 H57 SING N N 55
RYW C21 H59 SING N N 56
RYW C22 H60 SING N N 57
RYW C24 H61 SING N N 58
RYW C36 H69 SING N N 59
RYW C36 H68 SING N N 60
RYW C37 H70 SING N N 61
RYW C37 H71 SING N N 62
RYW C39 H72 SING N N 63
RYW C4 H47 SING N N 64
RYW C9 H49 SING N N 65
RYW O12 H52 SING N N 66
RYW N13 H53 SING N N 67
RYW C17 H55 SING N N 68
RYW C17 H54 SING N N 69
RYW C17 H56 SING N N 70
RYW N31 H62 SING N N 71
RYW C32 H63 SING N N 72
RYW C33 H64 SING N N 73
RYW C33 H65 SING N N 74
RYW C34 H66 SING N N 75
RYW C34 H67 SING N N 76
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
RYW InChI InChI 1.03 InChI=1S/C29H31ClFN5O5/c1-16(27(38)34-25(15-37)19-9-20(31)12-22(10-19)40-2)36-14-18-4-3-17(11-23(18)28(36)39)26-24(30)13-32-29(35-26)33-21-5-7-41-8-6-21/h3-4,9-13,16,21,25,37H,5-8,14-15H2,1-2H3,(H,34,38)(H,32,33,35)/t16-,25-/m1/s1
RYW InChIKey InChI 1.03 BVRGQPJKSKKGIH-PUAOIOHZSA-N
RYW SMILES_CANONICAL CACTVS 3.385 COc1cc(F)cc(c1)[C@@H](CO)NC(=O)[C@@H](C)N2Cc3ccc(cc3C2=O)c4nc(NC5CCOCC5)ncc4Cl
RYW SMILES CACTVS 3.385 COc1cc(F)cc(c1)[CH](CO)NC(=O)[CH](C)N2Cc3ccc(cc3C2=O)c4nc(NC5CCOCC5)ncc4Cl
RYW SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 C[C@H](C(=O)N[C@H](CO)c1cc(cc(c1)F)OC)N2Cc3ccc(cc3C2=O)c4c(cnc(n4)NC5CCOCC5)Cl
RYW SMILES "OpenEye OEToolkits" 2.0.7 CC(C(=O)NC(CO)c1cc(cc(c1)F)OC)N2Cc3ccc(cc3C2=O)c4c(cnc(n4)NC5CCOCC5)Cl
#
_pdbx_chem_comp_identifier.comp_id RYW
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier
(2~{R})-2-[5-[5-chloranyl-2-(oxan-4-ylamino)pyrimidin-4-yl]-3-oxidanylidene-1~{H}-isoindol-2-yl]-~{N}-[(1~{S})-1-(3-fluoranyl-5-methoxy-phenyl)-2-oxidanyl-ethyl]propanamide
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id RYW
_pdbx_chem_comp_synonyms.name ASTX029
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
RYW 'Create component' 2020-11-04 PDBE
RYW 'Initial release' 2021-10-06 RCSB
#
_pdbe_chem_comp_synonyms.comp_id RYW
_pdbe_chem_comp_synonyms.name ASTX029
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
RYW C1 C 27.486 -4.070 1
RYW C3 C 25.236 -2.771 2
RYW C5 C 25.236 -0.173 3
RYW C7 C 23.736 -0.173 4
RYW C8 C 22.986 -1.472 5
RYW C10 C 21.486 -1.472 6
RYW C11 C 20.736 -2.771 7
RYW C14 C 19.236 -0.173 8
RYW C16 C 18.486 1.126 9
RYW N18 N 16.986 1.126 10
RYW C19 C 16.111 -0.081 11
RYW C21 C 13.392 -0.374 12
RYW C22 C 12.093 0.376 13
RYW C23 C 12.093 1.876 14
RYW C24 C 13.392 2.626 15
RYW C25 C 14.691 1.876 16
RYW C26 C 16.111 2.333 17
RYW C28 C 10.794 2.626 18
RYW C36 C 4.299 4.876 19
RYW C37 C 5.598 4.126 20
RYW C39 C 9.495 4.876 21
RYW C40 C 10.794 4.126 22
RYW O2 O 25.986 -4.070 23
RYW C4 C 25.986 -1.472 24
RYW F6 F 25.986 1.126 25
RYW C9 C 23.736 -2.771 26
RYW O12 O 21.486 -4.070 27
RYW N13 N 20.736 -0.173 28
RYW O15 O 18.486 -1.472 29
RYW C17 C 19.236 2.425 30
RYW C20 C 14.691 0.376 31
RYW O27 O 16.577 3.759 32
RYW N29 N 9.495 1.876 33
RYW C30 C 8.196 2.626 34
RYW N31 N 6.897 1.876 35
RYW C32 C 5.598 2.626 36
RYW C33 C 4.299 1.876 37
RYW C34 C 3.000 2.626 38
RYW O35 O 3.000 4.126 39
RYW N38 N 8.196 4.126 40
RYW CL1 Cl 12.093 4.876 41
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
RYW O35 C36 SINGLE NONE 1
RYW O35 C34 SINGLE NONE 2
RYW C36 C37 SINGLE NONE 3
RYW C37 C32 SINGLE NONE 4
RYW C34 C33 SINGLE NONE 5
RYW C33 C32 SINGLE NONE 6
RYW C32 N31 SINGLE NONE 7
RYW N31 C30 SINGLE NONE 8
RYW C30 N29 DOUBLE NONE 9
RYW C30 N38 SINGLE NONE 10
RYW N29 C28 SINGLE NONE 11
RYW N38 C39 DOUBLE NONE 12
RYW C28 C23 SINGLE NONE 13
RYW C28 C40 DOUBLE NONE 14
RYW C24 C23 SINGLE NONE 15
RYW C24 C25 DOUBLE NONE 16
RYW C23 C22 DOUBLE NONE 17
RYW C39 C40 SINGLE NONE 18
RYW C16 C17 SINGLE BEGINDASH 19
RYW C25 C26 SINGLE NONE 20
RYW C25 C20 SINGLE NONE 21
RYW C22 C21 SINGLE NONE 22
RYW C26 O27 DOUBLE NONE 23
RYW C26 N18 SINGLE NONE 24
RYW C40 CL1 SINGLE NONE 25
RYW N18 C16 SINGLE NONE 26
RYW N18 C19 SINGLE NONE 27
RYW C20 C21 DOUBLE NONE 28
RYW C20 C19 SINGLE NONE 29
RYW C16 C14 SINGLE NONE 30
RYW C14 N13 SINGLE NONE 31
RYW C14 O15 DOUBLE NONE 32
RYW N13 C10 SINGLE NONE 33
RYW O12 C11 SINGLE NONE 34
RYW O2 C1 SINGLE NONE 35
RYW O2 C3 SINGLE NONE 36
RYW C9 C3 DOUBLE NONE 37
RYW C9 C8 SINGLE NONE 38
RYW C10 C11 SINGLE BEGINWEDGE 39
RYW C10 C8 SINGLE NONE 40
RYW C3 C4 SINGLE NONE 41
RYW C8 C7 DOUBLE NONE 42
RYW C4 C5 DOUBLE NONE 43
RYW C7 C5 SINGLE NONE 44
RYW C5 F6 SINGLE NONE 45
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
RYW MurckoScaffold S1 scaffold O=C(CN1Cc2ccc(-c3ccnc(NC4CCOCC4)n3)cc2C1=O)NCc1ccccc1 InChI=1S/C26H27N5O3/c32-24(28-15-18-4-2-1-3-5-18)17-31-16-20-7-6-19(14-22(20)25(31)33)23-8-11-27-26(30-23)29-21-9-12-34-13-10-21/h1-8,11,14,21H,9-10,12-13,15-17H2,(H,28,32)(H,27,29,30) XUVQUEJVJVRZLX-UHFFFAOYSA-N
RYW amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
RYW peptide F2 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
RYW phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
RYW pyrimidine F4 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
RYW Z31190928 F5 fragment CC(C)Nc1ncccn1 InChI=1S/C7H11N3/c1-6(2)10-7-8-4-3-5-9-7/h3-6H,1-2H3,(H,8,9,10) FTCYIGBVOHNHCD-UHFFFAOYSA-N
RYW Z54628578 F6 fragment CNc1ncccn1 InChI=1S/C5H7N3/c1-6-5-7-3-2-4-8-5/h2-4H,1H3,(H,6,7,8) BQNXHDSGGRTFNX-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
RYW C3 S1 1
RYW C5 S1 1
RYW C7 S1 1
RYW C8 S1 1
RYW C10 S1 1
RYW C14 S1 1
RYW C16 S1 1
RYW N18 S1 1
RYW C19 S1 1
RYW C21 S1 1
RYW C22 S1 1
RYW C23 S1 1
RYW C24 S1 1
RYW C25 S1 1
RYW C26 S1 1
RYW C28 S1 1
RYW C36 S1 1
RYW C37 S1 1
RYW C39 S1 1
RYW C40 S1 1
RYW C4 S1 1
RYW C9 S1 1
RYW N13 S1 1
RYW O15 S1 1
RYW C20 S1 1
RYW O27 S1 1
RYW N29 S1 1
RYW C30 S1 1
RYW N31 S1 1
RYW C32 S1 1
RYW C33 S1 1
RYW C34 S1 1
RYW O35 S1 1
RYW N38 S1 1
RYW N18 F1 1
RYW C26 F1 1
RYW O27 F1 1
RYW C25 F1 1
RYW N13 F1 2
RYW C14 F1 2
RYW O15 F1 2
RYW C16 F1 2
RYW O15 F2 1
RYW C14 F2 1
RYW C16 F2 1
RYW N18 F2 1
RYW C3 F3 1
RYW C9 F3 1
RYW C8 F3 1
RYW C7 F3 1
RYW C5 F3 1
RYW C4 F3 1
RYW C21 F3 2
RYW C22 F3 2
RYW C23 F3 2
RYW C24 F3 2
RYW C25 F3 2
RYW C20 F3 2
RYW C40 F4 1
RYW C28 F4 1
RYW N29 F4 1
RYW C30 F4 1
RYW N38 F4 1
RYW C39 F4 1
RYW C37 F5 1
RYW C32 F5 1
RYW C33 F5 1
RYW N31 F5 1
RYW C30 F5 1
RYW N29 F5 1
RYW C28 F5 1
RYW C40 F5 1
RYW C39 F5 1
RYW N38 F5 1
RYW C32 F6 1
RYW N31 F6 1
RYW C30 F6 1
RYW N29 F6 1
RYW C28 F6 1
RYW C40 F6 1
RYW C39 F6 1
RYW N38 F6 1
#
_pdbe_chem_comp_rdkit_properties.comp_id RYW
_pdbe_chem_comp_rdkit_properties.exactmw 583.200
_pdbe_chem_comp_rdkit_properties.amw 584.048
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 10
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 12
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 8
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 41
_pdbe_chem_comp_rdkit_properties.NumAtoms 72
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 12
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.379
_pdbe_chem_comp_rdkit_properties.NumRings 5
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 2
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 285.147
_pdbe_chem_comp_rdkit_properties.tpsa 125.910
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.343
_pdbe_chem_comp_rdkit_properties.CrippenMR 146.645
_pdbe_chem_comp_rdkit_properties.chi0v 20.289
_pdbe_chem_comp_rdkit_properties.chi1v 10.894
_pdbe_chem_comp_rdkit_properties.chi2v 5.052
_pdbe_chem_comp_rdkit_properties.chi3v 5.052
_pdbe_chem_comp_rdkit_properties.chi4v 3.248
_pdbe_chem_comp_rdkit_properties.chi0n 50.533
_pdbe_chem_comp_rdkit_properties.chi1n 25.819
_pdbe_chem_comp_rdkit_properties.chi2n 4.788
_pdbe_chem_comp_rdkit_properties.chi3n 4.788
_pdbe_chem_comp_rdkit_properties.chi4n 3.069
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.800
_pdbe_chem_comp_rdkit_properties.kappa1 9.352
_pdbe_chem_comp_rdkit_properties.kappa2 12.377
_pdbe_chem_comp_rdkit_properties.kappa3 6.266
_pdbe_chem_comp_rdkit_properties.Phi 2.823
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
RYW UniChem ChEMBL CHEMBL4847260
RYW UniChem PDBe RYW
RYW UniChem fdasrs 14FDK6ISC9
RYW UniChem SureChEMBL SCHEMBL18765557
RYW UniChem PubChem 129053037
RYW UniChem BindingDb 418007
RYW UniChem MedChemExpress HY-126288
RYW UniChem 'Probes And Drugs' PD151295
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
RYW C1 -8.516 -1.702 -0.890 ETKDGv3 1
RYW C3 -7.980 0.732 -1.147 ETKDGv3 2
RYW C5 -7.588 3.100 -1.616 ETKDGv3 3
RYW C7 -6.659 3.140 -0.470 ETKDGv3 4
RYW C8 -6.422 2.031 0.253 ETKDGv3 5
RYW C10 -5.477 2.079 1.439 ETKDGv3 6
RYW C11 -6.251 2.364 2.735 ETKDGv3 7
RYW C14 -3.776 0.420 0.542 ETKDGv3 8
RYW C16 -3.177 -0.960 0.594 ETKDGv3 9
RYW N18 -1.851 -0.975 -0.039 ETKDGv3 10
RYW C19 -1.583 -1.201 -1.472 ETKDGv3 11
RYW C21 0.634 -0.929 -2.714 ETKDGv3 12
RYW C22 2.067 -0.549 -2.596 ETKDGv3 13
RYW C23 2.578 -0.132 -1.409 ETKDGv3 14
RYW C24 1.702 -0.100 -0.203 ETKDGv3 15
RYW C25 0.425 -0.457 -0.349 ETKDGv3 16
RYW C26 -0.657 -0.518 0.600 ETKDGv3 17
RYW C28 4.008 0.210 -1.264 ETKDGv3 18
RYW C36 10.027 -0.996 2.927 ETKDGv3 19
RYW C37 8.506 -1.061 2.741 ETKDGv3 20
RYW C39 6.063 1.374 -1.823 ETKDGv3 21
RYW C40 4.633 1.103 -2.061 ETKDGv3 22
RYW O2 -8.658 -0.436 -1.529 ETKDGv3 23
RYW C4 -8.210 1.960 -1.937 ETKDGv3 24
RYW F6 -7.809 4.223 -2.344 ETKDGv3 25
RYW C9 -7.135 0.773 -0.097 ETKDGv3 26
RYW O12 -7.182 1.347 2.990 ETKDGv3 27
RYW N13 -4.715 0.829 1.547 ETKDGv3 28
RYW O15 -3.503 1.192 -0.419 ETKDGv3 29
RYW C17 -4.125 -1.969 -0.060 ETKDGv3 30
RYW C20 -0.127 -0.874 -1.618 ETKDGv3 31
RYW O27 -0.581 -0.201 1.817 ETKDGv3 32
RYW N29 4.748 -0.413 -0.199 ETKDGv3 33
RYW C30 6.009 -0.159 -0.000 ETKDGv3 34
RYW N31 6.702 -0.805 1.075 ETKDGv3 35
RYW C32 8.131 -0.591 1.327 ETKDGv3 36
RYW C33 8.975 -1.348 0.291 ETKDGv3 37
RYW C34 10.461 -1.267 0.665 ETKDGv3 38
RYW O35 10.688 -1.792 1.960 ETKDGv3 39
RYW N38 6.689 0.775 -0.855 ETKDGv3 40
RYW CL1 3.803 2.026 -3.311 ETKDGv3 41
RYW H46 -7.460 -2.043 -0.949 ETKDGv3 42
RYW H45 -9.158 -2.444 -1.407 ETKDGv3 43
RYW H44 -8.837 -1.633 0.171 ETKDGv3 44
RYW H48 -6.170 4.075 -0.225 ETKDGv3 45
RYW H42 -4.749 2.910 1.303 ETKDGv3 46
RYW H50 -5.532 2.433 3.581 ETKDGv3 47
RYW H51 -6.777 3.341 2.644 ETKDGv3 48
RYW H43 -3.060 -1.258 1.659 ETKDGv3 49
RYW H58 -2.194 -0.516 -2.097 ETKDGv3 50
RYW H57 -1.772 -2.262 -1.739 ETKDGv3 51
RYW H59 0.222 -1.247 -3.663 ETKDGv3 52
RYW H60 2.699 -0.630 -3.471 ETKDGv3 53
RYW H61 2.085 0.211 0.762 ETKDGv3 54
RYW H69 10.277 -1.390 3.935 ETKDGv3 55
RYW H68 10.385 0.059 2.892 ETKDGv3 56
RYW H70 8.010 -0.415 3.497 ETKDGv3 57
RYW H71 8.169 -2.110 2.898 ETKDGv3 58
RYW H72 6.594 2.078 -2.449 ETKDGv3 59
RYW H47 -8.889 1.935 -2.780 ETKDGv3 60
RYW H49 -6.960 -0.109 0.503 ETKDGv3 61
RYW H52 -7.641 1.599 3.833 ETKDGv3 62
RYW H53 -4.881 0.190 2.358 ETKDGv3 63
RYW H55 -4.346 -1.684 -1.111 ETKDGv3 64
RYW H54 -5.082 -2.012 0.502 ETKDGv3 65
RYW H56 -3.668 -2.982 -0.047 ETKDGv3 66
RYW H62 6.152 -1.424 1.713 ETKDGv3 67
RYW H63 8.354 0.498 1.257 ETKDGv3 68
RYW H64 8.664 -2.415 0.258 ETKDGv3 69
RYW H65 8.828 -0.910 -0.719 ETKDGv3 70
RYW H66 11.042 -1.871 -0.064 ETKDGv3 71
RYW H67 10.830 -0.219 0.586 ETKDGv3 72
#