data_RZK
#
_chem_comp.id RZK
_chem_comp.name 2-[5-(4-methoxyphenyl)-1,2,3,4-tetrazol-2-yl]ethanamine
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C10 H13 N5 O"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2020-11-04
_chem_comp.pdbx_modified_date 2021-02-12
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 219.243
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code RZK
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7AV1
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
RZK C3 C1 C 0 1 Y N N N N N -31.238 1.582 1.185 0.581 -0.498 -0.162 C3 RZK 1
RZK C11 C2 C 0 1 Y N N N N N -27.552 0.673 1.378 -3.144 -0.798 0.240 C11 RZK 2
RZK C12 C3 C 0 1 Y N N N N N -28.378 0.158 -0.776 -2.608 1.490 -0.274 C12 RZK 3
RZK C15 C4 C 0 1 N N N N N N -35.146 2.365 -0.508 4.610 0.636 0.737 C15 RZK 4
RZK C16 C5 C 0 1 N N N N N N -25.864 -0.592 -1.623 -5.781 -0.225 0.368 C16 RZK 5
RZK N1 N1 N 0 1 Y N N N N N -31.892 2.245 0.348 1.582 0.323 -0.411 N1 RZK 6
RZK N2 N2 N 0 1 Y N N N N N -32.040 1.386 2.332 1.118 -1.711 0.029 N2 RZK 7
RZK N4 N3 N 0 1 Y N N N N N -33.164 2.022 2.011 2.395 -1.591 -0.107 N4 RZK 8
RZK N5 N4 N 0 1 Y N N N N N -33.069 2.547 0.813 2.673 -0.362 -0.372 N5 RZK 9
RZK C6 C6 C 0 1 Y N N N N N -29.841 1.094 0.904 -0.859 -0.146 -0.099 C6 RZK 10
RZK C7 C7 C 0 1 N N N N N N -34.109 3.304 0.140 4.018 0.173 -0.595 C7 RZK 11
RZK C8 C8 C 0 1 Y N N N N N -29.604 0.603 -0.368 -1.268 1.166 -0.333 C8 RZK 12
RZK C9 C9 C 0 1 Y N N N N N -28.786 1.121 1.785 -1.807 -1.128 0.182 C9 RZK 13
RZK C10 C10 C 0 1 Y N N N N N -27.340 0.209 0.099 -3.548 0.510 0.012 C10 RZK 14
RZK N13 N5 N 0 1 N N N N N N -34.651 1.552 -1.602 5.959 1.173 0.513 N13 RZK 15
RZK O14 O1 O 0 1 N N N N N N -26.102 -0.225 -0.293 -4.867 0.832 0.069 O14 RZK 16
RZK H1 H1 H 0 1 N N N N N N -26.729 0.685 2.078 -3.879 -1.559 0.458 H1 RZK 17
RZK H2 H2 H 0 1 N N N N N N -28.237 -0.227 -1.775 -2.925 2.507 -0.455 H2 RZK 18
RZK H3 H3 H 0 1 N N N N N N -35.971 2.983 -0.891 3.977 1.412 1.166 H3 RZK 19
RZK H4 H4 H 0 1 N N N N N N -35.526 1.689 0.272 4.665 -0.209 1.424 H4 RZK 20
RZK H5 H5 H 0 1 N N N N N N -24.817 -0.909 -1.735 -5.701 -1.000 -0.394 H5 RZK 21
RZK H6 H6 H 0 1 N N N N N N -26.530 -1.423 -1.899 -5.540 -0.648 1.344 H6 RZK 22
RZK H7 H7 H 0 1 N N N N N N -26.058 0.268 -2.281 -6.798 0.167 0.383 H7 RZK 23
RZK H8 H8 H 0 1 N N N N N N -33.651 3.928 -0.642 3.964 1.018 -1.282 H8 RZK 24
RZK H9 H9 H 0 1 N N N N N N -34.616 3.948 0.873 4.652 -0.603 -1.025 H9 RZK 25
RZK H10 H10 H 0 1 N N N N N N -30.425 0.570 -1.069 -0.537 1.929 -0.556 H10 RZK 26
RZK H11 H11 H 0 1 N N N N N N -28.926 1.492 2.790 -1.493 -2.147 0.355 H11 RZK 27
RZK H12 H12 H 0 1 N N N N N N -35.392 0.980 -1.955 6.372 1.485 1.380 H12 RZK 28
RZK H13 H13 H 0 1 N N N N N N -34.312 2.146 -2.332 6.548 0.492 0.057 H13 RZK 29
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
RZK C16 O14 SING N N 1
RZK N13 C15 SING N N 2
RZK C12 C8 DOUB Y N 3
RZK C12 C10 SING Y N 4
RZK C15 C7 SING N N 5
RZK C8 C6 SING Y N 6
RZK O14 C10 SING N N 7
RZK C10 C11 DOUB Y N 8
RZK C7 N5 SING N N 9
RZK N1 N5 SING Y N 10
RZK N1 C3 DOUB Y N 11
RZK N5 N4 SING Y N 12
RZK C6 C3 SING N N 13
RZK C6 C9 DOUB Y N 14
RZK C3 N2 SING Y N 15
RZK C11 C9 SING Y N 16
RZK N4 N2 DOUB Y N 17
RZK C11 H1 SING N N 18
RZK C12 H2 SING N N 19
RZK C15 H3 SING N N 20
RZK C15 H4 SING N N 21
RZK C16 H5 SING N N 22
RZK C16 H6 SING N N 23
RZK C16 H7 SING N N 24
RZK C7 H8 SING N N 25
RZK C7 H9 SING N N 26
RZK C8 H10 SING N N 27
RZK C9 H11 SING N N 28
RZK N13 H12 SING N N 29
RZK N13 H13 SING N N 30
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
RZK InChI InChI 1.03 InChI=1S/C10H13N5O/c1-16-9-4-2-8(3-5-9)10-12-14-15(13-10)7-6-11/h2-5H,6-7,11H2,1H3
RZK InChIKey InChI 1.03 FHPKDNRSYHKLSG-UHFFFAOYSA-N
RZK SMILES_CANONICAL CACTVS 3.385 COc1ccc(cc1)c2nnn(CCN)n2
RZK SMILES CACTVS 3.385 COc1ccc(cc1)c2nnn(CCN)n2
RZK SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 COc1ccc(cc1)c2nnn(n2)CCN
RZK SMILES "OpenEye OEToolkits" 2.0.7 COc1ccc(cc1)c2nnn(n2)CCN
#
_pdbx_chem_comp_identifier.comp_id RZK
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier 2-[5-(4-methoxyphenyl)-1,2,3,4-tetrazol-2-yl]ethanamine
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
RZK 'Create component' 2020-11-04 PDBE
RZK 'Initial release' 2021-02-17 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
RZK C3 C 5.828 -0.103 1
RZK C11 C 4.529 -3.853 2
RZK C12 C 7.127 -3.853 3
RZK C15 C 4.807 4.790 4
RZK C16 C 7.127 -6.853 5
RZK N1 N 4.615 0.779 6
RZK N2 N 7.042 0.779 7
RZK N4 N 6.578 2.206 8
RZK N5 N 5.078 2.206 9
RZK C6 C 5.828 -1.603 10
RZK C7 C 4.196 3.419 11
RZK C8 C 7.127 -2.353 12
RZK C9 C 4.529 -2.353 13
RZK C10 C 5.828 -4.603 14
RZK N13 N 3.925 6.003 15
RZK O14 O 5.828 -6.103 16
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
RZK C16 O14 SINGLE NONE 1
RZK N13 C15 SINGLE NONE 2
RZK C12 C8 DOUBLE NONE 3
RZK C12 C10 SINGLE NONE 4
RZK C15 C7 SINGLE NONE 5
RZK C8 C6 SINGLE NONE 6
RZK O14 C10 SINGLE NONE 7
RZK C10 C11 DOUBLE NONE 8
RZK C7 N5 SINGLE NONE 9
RZK N1 N5 SINGLE NONE 10
RZK N1 C3 DOUBLE NONE 11
RZK N5 N4 SINGLE NONE 12
RZK C6 C3 SINGLE NONE 13
RZK C6 C9 DOUBLE NONE 14
RZK C3 N2 SINGLE NONE 15
RZK C11 C9 SINGLE NONE 16
RZK N4 N2 DOUBLE NONE 17
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
RZK MurckoScaffold S1 scaffold 'c1ccc(-c2nn[nH]n2)cc1' InChI=1S/C7H6N4/c1-2-4-6(5-3-1)7-8-10-11-9-7/h1-5H,(H,8,9,10,11) MARUHZGHZWCEQU-UHFFFAOYSA-N
RZK phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
RZK C3 S1 1
RZK C11 S1 1
RZK C12 S1 1
RZK N1 S1 1
RZK N2 S1 1
RZK N4 S1 1
RZK N5 S1 1
RZK C6 S1 1
RZK C8 S1 1
RZK C9 S1 1
RZK C10 S1 1
RZK C11 F1 1
RZK C10 F1 1
RZK C12 F1 1
RZK C8 F1 1
RZK C6 F1 1
RZK C9 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id RZK
_pdbe_chem_comp_rdkit_properties.exactmw 219.112
_pdbe_chem_comp_rdkit_properties.amw 219.248
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 6
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 6
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 6
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 16
_pdbe_chem_comp_rdkit_properties.NumAtoms 29
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 6
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.300
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 111.401
_pdbe_chem_comp_rdkit_properties.tpsa 78.850
_pdbe_chem_comp_rdkit_properties.CrippenClogP -0.535
_pdbe_chem_comp_rdkit_properties.CrippenMR 56.927
_pdbe_chem_comp_rdkit_properties.chi0v 7.644
_pdbe_chem_comp_rdkit_properties.chi1v 3.903
_pdbe_chem_comp_rdkit_properties.chi2v 1.491
_pdbe_chem_comp_rdkit_properties.chi3v 1.491
_pdbe_chem_comp_rdkit_properties.chi4v 0.870
_pdbe_chem_comp_rdkit_properties.chi0n 20.644
_pdbe_chem_comp_rdkit_properties.chi1n 10.297
_pdbe_chem_comp_rdkit_properties.chi2n 1.491
_pdbe_chem_comp_rdkit_properties.chi3n 1.491
_pdbe_chem_comp_rdkit_properties.chi4n 0.870
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.950
_pdbe_chem_comp_rdkit_properties.kappa1 3.041
_pdbe_chem_comp_rdkit_properties.kappa2 4.714
_pdbe_chem_comp_rdkit_properties.kappa3 2.168
_pdbe_chem_comp_rdkit_properties.Phi 0.896
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
RZK UniChem ChEMBL CHEMBL4875329
RZK UniChem PDBe RZK
RZK UniChem PubChem 83535370
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
RZK C3 0.567 -0.396 0.723 ETKDGv3 1
RZK C11 -2.659 1.483 -0.098 ETKDGv3 2
RZK C12 -3.138 -0.897 0.131 ETKDGv3 3
RZK C15 4.450 0.121 -0.551 ETKDGv3 4
RZK C16 -5.960 -0.121 -0.473 ETKDGv3 5
RZK N1 1.516 0.484 0.762 ETKDGv3 6
RZK N2 1.056 -1.719 0.969 ETKDGv3 7
RZK N4 2.307 -1.606 1.160 ETKDGv3 8
RZK N5 2.656 -0.259 1.069 ETKDGv3 9
RZK C6 -0.846 -0.079 0.430 ETKDGv3 10
RZK C7 4.019 0.227 0.911 ETKDGv3 11
RZK C8 -1.854 -1.168 0.395 ETKDGv3 12
RZK C9 -1.242 1.185 0.193 ETKDGv3 13
RZK C10 -3.571 0.502 -0.131 ETKDGv3 14
RZK N13 5.808 0.631 -0.713 ETKDGv3 15
RZK O14 -4.904 0.830 -0.411 ETKDGv3 16
RZK H1 -2.957 2.507 -0.286 ETKDGv3 17
RZK H2 -3.852 -1.709 0.111 ETKDGv3 18
RZK H3 3.757 0.721 -1.180 ETKDGv3 19
RZK H4 4.402 -0.940 -0.884 ETKDGv3 20
RZK H5 -6.908 0.404 -0.711 ETKDGv3 21
RZK H6 -5.756 -0.866 -1.271 ETKDGv3 22
RZK H7 -6.072 -0.632 0.507 ETKDGv3 23
RZK H8 4.700 -0.377 1.551 ETKDGv3 24
RZK H9 4.072 1.286 1.244 ETKDGv3 25
RZK H10 -1.557 -2.192 0.583 ETKDGv3 26
RZK H11 -0.534 2.005 0.210 ETKDGv3 27
RZK H12 6.033 0.615 -1.734 ETKDGv3 28
RZK H13 6.466 -0.039 -0.254 ETKDGv3 29
#