data_RZX
#
_chem_comp.id RZX
_chem_comp.name 2-[(R)-{[4-(3-methoxypropoxy)-3-methylpyridin-2-yl]methyl}sulfinyl]-1H-benzimidazole
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C18 H21 N3 O3 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms Rabeprazole
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2010-11-09
_chem_comp.pdbx_modified_date 2021-03-01
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 359.443
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code RZX
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3PGL
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
RZX C1 C1 C 0 1 Y N N N N N 3.451 11.372 -3.179 6.090 2.078 0.376 C1 RZX 1
RZX C2 C2 C 0 1 Y N N N N N 3.165 11.725 -4.486 5.159 1.094 0.036 C2 RZX 2
RZX C3 C3 C 0 1 Y N N N N N 3.877 12.874 -5.101 5.573 -0.246 -0.059 C3 RZX 3
RZX C4 C4 C 0 1 Y N N N N N 4.820 13.561 -4.351 6.898 -0.578 0.186 C4 RZX 4
RZX C5 C5 C 0 1 Y N N N N N 5.084 13.173 -3.041 7.799 0.410 0.521 C5 RZX 5
RZX C6 C6 C 0 1 Y N N N N N 4.404 12.103 -2.475 7.390 1.733 0.614 C6 RZX 6
RZX N7 N7 N 0 1 Y N N N N N 3.415 13.005 -6.362 4.449 -0.969 -0.405 N7 RZX 7
RZX C8 C8 C 0 1 Y N N N N N 2.510 12.009 -6.499 3.417 -0.087 -0.510 C8 RZX 8
RZX N9 N9 N 0 1 Y N N N N N 2.316 11.231 -5.417 3.832 1.119 -0.252 N9 RZX 9
RZX S10 S10 S 0 1 N N R N N N 1.652 11.846 -7.961 1.762 -0.516 -0.932 S10 RZX 10
RZX C11 C11 C 0 1 N N N N N N 0.720 10.440 -8.327 1.003 -0.853 0.680 C11 RZX 11
RZX C12 C12 C 0 1 Y N N N N N 0.520 9.266 -7.391 -0.440 -1.241 0.486 C12 RZX 12
RZX N13 N13 N 0 1 Y N N N N N 0.580 8.095 -8.041 -0.757 -2.510 0.316 N13 RZX 13
RZX C14 C14 C 0 1 Y N N N N N 0.432 6.923 -7.413 -2.006 -2.900 0.142 C14 RZX 14
RZX C15 C15 C 0 1 Y N N N N N 0.171 6.850 -6.049 -3.037 -1.984 0.130 C15 RZX 15
RZX C16 C16 C 0 1 Y N N N N N 0.073 8.037 -5.330 -2.745 -0.633 0.306 C16 RZX 16
RZX C17 C17 C 0 1 Y N N N N N 0.243 9.271 -5.999 -1.415 -0.264 0.492 C17 RZX 17
RZX O18 O18 O 0 1 N N N N N N 0.601 12.933 -7.994 1.241 0.697 -1.457 O18 RZX 18
RZX O19 O19 O 0 1 N N N N N N -0.185 7.965 -3.969 -3.732 0.299 0.301 O19 RZX 19
RZX C20 C20 C 0 1 N N N N N N -1.422 7.443 -3.469 -5.067 -0.171 0.108 C20 RZX 20
RZX C21 C21 C 0 1 N N N N N N -2.426 8.589 -3.436 -6.034 1.014 0.132 C21 RZX 21
RZX C22 C22 C 0 1 N N N N N N -3.795 8.142 -2.957 -7.464 0.510 -0.074 C22 RZX 22
RZX O23 O23 O 0 1 N N N N N N -4.743 8.920 -3.698 -8.367 1.618 -0.051 O23 RZX 23
RZX C24 C24 C 0 1 N N N N N N -5.849 8.142 -4.163 -9.737 1.255 -0.236 C24 RZX 24
RZX C25 C25 C 0 1 N N N N N N 0.134 10.544 -5.178 -1.045 1.183 0.693 C25 RZX 25
RZX H1 H1 H 0 1 N N N N N N 2.942 10.542 -2.712 5.783 3.111 0.447 H1 RZX 26
RZX H4 H4 H 0 1 N N N N N N 5.349 14.397 -4.784 7.221 -1.606 0.115 H4 RZX 27
RZX H5 H5 H 0 1 N N N N N N 5.822 13.707 -2.461 8.831 0.153 0.712 H5 RZX 28
RZX H6 H6 H 0 1 N N N N N N 4.622 11.828 -1.453 8.107 2.497 0.877 H6 RZX 29
RZX HN7 HN7 H 0 1 N N N N N N 3.682 13.686 -7.043 4.402 -1.927 -0.548 HN7 RZX 30
RZX H11 H11 H 0 1 N N N N N N -0.295 10.821 -8.516 1.535 -1.669 1.169 H11 RZX 31
RZX H11A H11A H 0 0 N N N N N N 1.205 10.008 -9.215 1.058 0.041 1.302 H11A RZX 32
RZX H14 H14 H 0 1 N N N N N N 0.518 6.008 -7.981 -2.223 -3.949 0.006 H14 RZX 33
RZX H15 H15 H 0 1 N N N N N N 0.047 5.895 -5.560 -4.057 -2.309 -0.013 H15 RZX 34
RZX H20 H20 H 0 1 N N N N N N -1.787 6.640 -4.126 -5.139 -0.679 -0.854 H20 RZX 35
RZX H20A H20A H 0 0 N N N N N N -1.279 7.036 -2.457 -5.326 -0.868 0.906 H20A RZX 36
RZX H21 H21 H 0 1 N N N N N N -2.051 9.363 -2.750 -5.963 1.522 1.094 H21 RZX 37
RZX H21A H21A H 0 0 N N N N N N -2.527 8.995 -4.453 -5.775 1.710 -0.666 H21A RZX 38
RZX H22 H22 H 0 1 N N N N N N -3.941 7.068 -3.146 -7.536 0.003 -1.036 H22 RZX 39
RZX H22A H22A H 0 0 N N N N N N -3.906 8.320 -1.877 -7.723 -0.186 0.725 H22A RZX 40
RZX H24 H24 H 0 1 N N N N N N -6.542 8.787 -4.723 -9.855 0.762 -1.201 H24 RZX 41
RZX H24A H24A H 0 0 N N N N N N -5.482 7.340 -4.821 -10.042 0.574 0.559 H24A RZX 42
RZX H24B H24B H 0 0 N N N N N N -6.373 7.700 -3.303 -10.357 2.150 -0.206 H24B RZX 43
RZX H25 H25 H 0 1 N N N N N N -0.910 10.891 -5.176 -0.849 1.645 -0.275 H25 RZX 44
RZX H25A H25A H 0 0 N N N N N N 0.455 10.343 -4.145 -1.867 1.704 1.184 H25A RZX 45
RZX H25B H25B H 0 0 N N N N N N 0.778 11.320 -5.618 -0.152 1.247 1.314 H25B RZX 46
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
RZX C1 C2 DOUB Y N 1
RZX C1 C6 SING Y N 2
RZX C2 C3 SING Y N 3
RZX C2 N9 SING Y N 4
RZX C3 C4 DOUB Y N 5
RZX C3 N7 SING Y N 6
RZX C4 C5 SING Y N 7
RZX C5 C6 DOUB Y N 8
RZX N7 C8 SING Y N 9
RZX C8 N9 DOUB Y N 10
RZX C8 S10 SING N N 11
RZX S10 C11 SING N N 12
RZX S10 O18 DOUB N N 13
RZX C11 C12 SING N N 14
RZX C12 N13 DOUB Y N 15
RZX C12 C17 SING Y N 16
RZX N13 C14 SING Y N 17
RZX C14 C15 DOUB Y N 18
RZX C15 C16 SING Y N 19
RZX C16 C17 DOUB Y N 20
RZX C16 O19 SING N N 21
RZX C17 C25 SING N N 22
RZX O19 C20 SING N N 23
RZX C20 C21 SING N N 24
RZX C21 C22 SING N N 25
RZX C22 O23 SING N N 26
RZX O23 C24 SING N N 27
RZX C1 H1 SING N N 28
RZX C4 H4 SING N N 29
RZX C5 H5 SING N N 30
RZX C6 H6 SING N N 31
RZX N7 HN7 SING N N 32
RZX C11 H11 SING N N 33
RZX C11 H11A SING N N 34
RZX C14 H14 SING N N 35
RZX C15 H15 SING N N 36
RZX C20 H20 SING N N 37
RZX C20 H20A SING N N 38
RZX C21 H21 SING N N 39
RZX C21 H21A SING N N 40
RZX C22 H22 SING N N 41
RZX C22 H22A SING N N 42
RZX C24 H24 SING N N 43
RZX C24 H24A SING N N 44
RZX C24 H24B SING N N 45
RZX C25 H25 SING N N 46
RZX C25 H25A SING N N 47
RZX C25 H25B SING N N 48
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
RZX SMILES ACDLabs 12.01 O=S(c2nc1ccccc1n2)Cc3nccc(OCCCOC)c3C
RZX SMILES_CANONICAL CACTVS 3.370 COCCCOc1ccnc(C[S@@](=O)c2[nH]c3ccccc3n2)c1C
RZX SMILES CACTVS 3.370 COCCCOc1ccnc(C[S](=O)c2[nH]c3ccccc3n2)c1C
RZX SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 Cc1c(ccnc1C[S@@](=O)c2[nH]c3ccccc3n2)OCCCOC
RZX SMILES "OpenEye OEToolkits" 1.7.0 Cc1c(ccnc1CS(=O)c2[nH]c3ccccc3n2)OCCCOC
RZX InChI InChI 1.03 InChI=1S/C18H21N3O3S/c1-13-16(19-9-8-17(13)24-11-5-10-23-2)12-25(22)18-20-14-6-3-4-7-15(14)21-18/h3-4,6-9H,5,10-12H2,1-2H3,(H,20,21)/t25-/m1/s1
RZX InChIKey InChI 1.03 YREYEVIYCVEVJK-RUZDIDTESA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
RZX "SYSTEMATIC NAME" ACDLabs 12.01 2-[(R)-{[4-(3-methoxypropoxy)-3-methylpyridin-2-yl]methyl}sulfinyl]-1H-benzimidazole
RZX "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 2-[(R)-[4-(3-methoxypropoxy)-3-methyl-pyridin-2-yl]methylsulfinyl]-1H-benzimidazole
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
RZX 'Create component' 2010-11-09 RCSB
RZX 'Modify aromatic_flag' 2011-06-04 RCSB
RZX 'Modify descriptor' 2011-06-04 RCSB
RZX 'Modify synonyms' 2021-03-01 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id RZX
_pdbx_chem_comp_synonyms.name Rabeprazole
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_drugbank_details.comp_id RZX
_pdbe_chem_comp_drugbank_details.drugbank_id DB13762
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name Dexrabeprazole
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number 177795-60-7
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
RZX Rabeprazole wwPDB ?
RZX 'Rabeprazole, (r)-' DrugBank ?
#
_pdbe_chem_comp_drugbank_classification.comp_id RZX
_pdbe_chem_comp_drugbank_classification.drugbank_id DB13762
_pdbe_chem_comp_drugbank_classification.parent Sulfinylbenzimidazoles
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class Benzimidazoles
_pdbe_chem_comp_drugbank_classification.superclass 'Organoheterocyclic compounds'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as sulfinylbenzimidazoles. These are polycyclic aromatic compounds containing a sulfinyl group attached at the position 2 of a benzimidazole moiety.'
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
RZX C1 C 4.299 -2.150 1
RZX C2 C 5.598 -1.399 2
RZX C3 C 5.598 0.101 3
RZX C4 C 4.299 0.851 4
RZX C5 C 3.000 0.101 5
RZX C6 C 3.000 -1.399 6
RZX N7 N 7.018 0.557 7
RZX C8 C 7.893 -0.649 8
RZX N9 N 7.018 -1.857 9
RZX S10 S 9.393 -0.649 10
RZX C11 C 10.143 -1.948 11
RZX C12 C 11.643 -1.948 12
RZX N13 N 12.393 -3.248 13
RZX C14 C 13.893 -3.248 14
RZX C15 C 14.643 -1.948 15
RZX C16 C 13.893 -0.649 16
RZX C17 C 12.393 -0.649 17
RZX O18 O 10.143 0.649 18
RZX O19 O 14.643 0.649 19
RZX C20 C 16.143 0.649 20
RZX C21 C 16.893 1.948 21
RZX C22 C 18.393 1.948 22
RZX O23 O 19.143 3.248 23
RZX C24 C 20.643 3.248 24
RZX C25 C 11.643 0.649 25
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
RZX C1 C2 DOUBLE NONE 1
RZX C1 C6 SINGLE NONE 2
RZX C2 C3 SINGLE NONE 3
RZX C2 N9 SINGLE NONE 4
RZX C3 C4 DOUBLE NONE 5
RZX C3 N7 SINGLE NONE 6
RZX C4 C5 SINGLE NONE 7
RZX C5 C6 DOUBLE NONE 8
RZX N7 C8 SINGLE NONE 9
RZX C8 N9 DOUBLE NONE 10
RZX C8 S10 SINGLE NONE 11
RZX S10 C11 SINGLE BEGINDASH 12
RZX S10 O18 DOUBLE NONE 13
RZX C11 C12 SINGLE NONE 14
RZX C12 N13 DOUBLE NONE 15
RZX C12 C17 SINGLE NONE 16
RZX N13 C14 SINGLE NONE 17
RZX C14 C15 DOUBLE NONE 18
RZX C15 C16 SINGLE NONE 19
RZX C16 C17 DOUBLE NONE 20
RZX C16 O19 SINGLE NONE 21
RZX C17 C25 SINGLE NONE 22
RZX O19 C20 SINGLE NONE 23
RZX C20 C21 SINGLE NONE 24
RZX C21 C22 SINGLE NONE 25
RZX C22 O23 SINGLE NONE 26
RZX O23 C24 SINGLE NONE 27
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
RZX MurckoScaffold S1 scaffold 'O=[S@](Cc1ccccn1)c1nc2ccccc2[nH]1' InChI=1S/C13H11N3OS/c17-18(9-10-5-3-4-8-14-10)13-15-11-6-1-2-7-12(11)16-13/h1-8H,9H2,(H,15,16)/t18-/m1/s1 HBDKFZNDMVLSHM-GOSISDBHSA-N
RZX benzimidazole F1 fragment 'c1ccc2[nH]cnc2c1' InChI=1S/C7H6N2/c1-2-4-7-6(3-1)8-5-9-7/h1-5H,(H,8,9) HYZJCKYKOHLVJF-UHFFFAOYSA-N
RZX imidazole F2 fragment 'c1c[nH]cn1' InChI=1S/C3H4N2/c1-2-5-3-4-1/h1-3H,(H,4,5) RAXXELZNTBOGNW-UHFFFAOYSA-N
RZX phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
RZX pyridine F4 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N
RZX Z262134322 F5 fragment 'c1ccc(CSc2nc3ccccc3[nH]2)nc1' InChI=1S/C13H11N3S/c1-2-7-12-11(6-1)15-13(16-12)17-9-10-5-3-4-8-14-10/h1-8H,9H2,(H,15,16) PLITYYGQMDTHMM-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
RZX C1 S1 1
RZX C2 S1 1
RZX C3 S1 1
RZX C4 S1 1
RZX C5 S1 1
RZX C6 S1 1
RZX N7 S1 1
RZX C8 S1 1
RZX N9 S1 1
RZX S10 S1 1
RZX C11 S1 1
RZX C12 S1 1
RZX N13 S1 1
RZX C14 S1 1
RZX C15 S1 1
RZX C16 S1 1
RZX C17 S1 1
RZX O18 S1 1
RZX C2 F1 1
RZX N9 F1 1
RZX C8 F1 1
RZX N7 F1 1
RZX C3 F1 1
RZX C4 F1 1
RZX C5 F1 1
RZX C6 F1 1
RZX C1 F1 1
RZX C2 F2 1
RZX C3 F2 1
RZX N7 F2 1
RZX C8 F2 1
RZX N9 F2 1
RZX C1 F3 1
RZX C2 F3 1
RZX C3 F3 1
RZX C4 F3 1
RZX C5 F3 1
RZX C6 F3 1
RZX C12 F4 1
RZX C17 F4 1
RZX C16 F4 1
RZX C15 F4 1
RZX C14 F4 1
RZX N13 F4 1
RZX C11 F5 1
RZX S10 F5 1
RZX C8 F5 1
RZX N7 F5 1
RZX C3 F5 1
RZX C4 F5 1
RZX C5 F5 1
RZX C6 F5 1
RZX C1 F5 1
RZX C2 F5 1
RZX N9 F5 1
RZX C12 F5 1
RZX C17 F5 1
RZX C16 F5 1
RZX C15 F5 1
RZX C14 F5 1
RZX N13 F5 1
#
_pdbe_chem_comp_rdkit_properties.comp_id RZX
_pdbe_chem_comp_rdkit_properties.exactmw 359.130
_pdbe_chem_comp_rdkit_properties.amw 359.451
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 6
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 10
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 5
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 25
_pdbe_chem_comp_rdkit_properties.NumAtoms 46
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 7
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.333
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 178.172
_pdbe_chem_comp_rdkit_properties.tpsa 77.100
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.881
_pdbe_chem_comp_rdkit_properties.CrippenMR 94.390
_pdbe_chem_comp_rdkit_properties.chi0v 12.791
_pdbe_chem_comp_rdkit_properties.chi1v 7.383
_pdbe_chem_comp_rdkit_properties.chi2v 3.419
_pdbe_chem_comp_rdkit_properties.chi3v 3.419
_pdbe_chem_comp_rdkit_properties.chi4v 2.291
_pdbe_chem_comp_rdkit_properties.chi0n 32.975
_pdbe_chem_comp_rdkit_properties.chi1n 16.680
_pdbe_chem_comp_rdkit_properties.chi2n 2.526
_pdbe_chem_comp_rdkit_properties.chi3n 2.526
_pdbe_chem_comp_rdkit_properties.chi4n 1.528
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.250
_pdbe_chem_comp_rdkit_properties.kappa1 5.142
_pdbe_chem_comp_rdkit_properties.kappa2 8.221
_pdbe_chem_comp_rdkit_properties.kappa3 4.237
_pdbe_chem_comp_rdkit_properties.Phi 1.691
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
RZX UniChem ChEMBL CHEMBL1615209
RZX UniChem DrugBank DB13762
RZX UniChem PDBe RZX
RZX UniChem ChEBI 134729
RZX UniChem ZINC ZINC000001530935
RZX UniChem fdasrs 65JK8810RM
RZX UniChem SureChEMBL SCHEMBL4946138
RZX UniChem DrugCentral 4867
RZX UniChem ClinicalTrials DEXRABEPRAZOLE
RZX UniChem 'Probes And Drugs' PD073702
RZX UniChem 'EPA CompTox Dashboard' DTXSID00432680
RZX UniChem PubChem 9906855
RZX UniChem BindingDb 50409892
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
RZX C1 -6.784 2.082 0.579 ETKDGv3 1
RZX C2 -5.882 1.224 0.101 ETKDGv3 2
RZX C3 -6.194 -0.146 -0.154 ETKDGv3 3
RZX C4 -7.403 -0.664 0.065 ETKDGv3 4
RZX C5 -8.446 0.256 0.599 ETKDGv3 5
RZX C6 -8.153 1.556 0.842 ETKDGv3 6
RZX N7 -5.027 -0.767 -0.647 ETKDGv3 7
RZX C8 -4.070 0.308 -0.652 ETKDGv3 8
RZX N9 -4.521 1.459 -0.231 ETKDGv3 9
RZX S10 -2.392 0.093 -1.182 ETKDGv3 10
RZX C11 -1.749 -1.210 -0.110 ETKDGv3 11
RZX C12 -0.297 -1.450 -0.411 ETKDGv3 12
RZX N13 0.011 -2.392 -1.255 ETKDGv3 13
RZX C14 1.368 -2.686 -1.613 ETKDGv3 14
RZX C15 2.369 -1.989 -1.075 ETKDGv3 15
RZX C16 2.075 -0.898 -0.110 ETKDGv3 16
RZX C17 0.788 -0.613 0.194 ETKDGv3 17
RZX O18 -2.523 -0.559 -2.551 ETKDGv3 18
RZX O19 3.109 -0.163 0.491 ETKDGv3 19
RZX C20 4.495 -0.377 0.243 ETKDGv3 20
RZX C21 5.314 0.609 1.076 ETKDGv3 21
RZX C22 6.823 0.403 0.889 ETKDGv3 22
RZX O23 7.196 0.590 -0.465 ETKDGv3 23
RZX C24 7.649 1.909 -0.673 ETKDGv3 24
RZX C25 0.452 0.476 1.185 ETKDGv3 25
RZX H1 -6.531 3.117 0.768 ETKDGv3 26
RZX H4 -7.616 -1.706 -0.135 ETKDGv3 27
RZX H5 -9.443 -0.119 0.793 ETKDGv3 28
RZX H6 -8.916 2.219 1.230 ETKDGv3 29
RZX HN7 -4.891 -1.761 -0.938 ETKDGv3 30
RZX H11 -2.332 -2.141 -0.279 ETKDGv3 31
RZX H11A -1.887 -0.922 0.953 ETKDGv3 32
RZX H14 1.575 -3.480 -2.319 ETKDGv3 33
RZX H15 3.386 -2.230 -1.353 ETKDGv3 34
RZX H20 4.766 -1.418 0.528 ETKDGv3 35
RZX H20A 4.706 -0.219 -0.837 ETKDGv3 36
RZX H21 5.038 1.648 0.795 ETKDGv3 37
RZX H21A 5.065 0.468 2.150 ETKDGv3 38
RZX H22 7.381 1.059 1.598 ETKDGv3 39
RZX H22A 7.078 -0.640 1.176 ETKDGv3 40
RZX H24 8.602 2.090 -0.129 ETKDGv3 41
RZX H24A 7.848 2.048 -1.756 ETKDGv3 42
RZX H24B 6.883 2.658 -0.374 ETKDGv3 43
RZX H25 0.250 0.021 2.177 ETKDGv3 44
RZX H25A -0.443 1.040 0.853 ETKDGv3 45
RZX H25B 1.271 1.217 1.290 ETKDGv3 46
#