data_S13
#
_chem_comp.id S13
_chem_comp.name (3S,5R,7R,8S,9S,10R)-7-(hydroxymethyl)-3-(4-methylphenyl)-1,6-dioxa-2-azaspiro[4.5]decane-8,9,10-triol
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C15 H21 N O6"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "(1R)-3'-(4-methylphenyl)-spiro[1,5-anhydro-D-glucitol-1,5'-isoxazoline]"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2007-09-04
_chem_comp.pdbx_modified_date 2021-03-13
_chem_comp.pdbx_ambiguous_flag ?
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 311.330
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code S13
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 2QRQ
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
S13 C10 C10 C 0 1 Y N N N N N 36.183 24.382 30.588 3.631 1.327 0.636 C10 S13 1
S13 C11 C11 C 0 1 Y N N N N N 36.872 24.834 31.718 4.983 1.052 0.712 C11 S13 2
S13 C12 C12 C 0 1 Y N N N N N 36.169 25.170 32.876 5.493 -0.083 0.109 C12 S13 3
S13 C15 C15 C 0 1 N N N N N N 36.919 25.670 34.118 6.968 -0.382 0.192 C15 S13 4
S13 C13 C13 C 0 1 Y N N N N N 34.784 25.040 32.914 4.650 -0.943 -0.570 C13 S13 5
S13 C14 C14 C 0 1 Y N N N N N 34.097 24.590 31.784 3.297 -0.668 -0.646 C14 S13 6
S13 C9 C9 C 0 1 Y N N N N N 34.793 24.251 30.621 2.788 0.467 -0.043 C9 S13 7
S13 C8 C8 C 0 1 N N S N N N 34.092 23.818 29.492 1.313 0.767 -0.126 C8 S13 8
S13 C7 C7 C 0 1 N N N N N N 34.673 23.114 28.265 0.517 -0.115 0.873 C7 S13 9
S13 N1 N1 N 0 1 N N N N N N 32.788 23.984 29.290 0.771 0.363 -1.444 N1 S13 10
S13 O7 O7 O 0 1 N N N N N N 32.357 23.460 28.026 -0.557 -0.225 -1.231 O7 S13 11
S13 C1 C1 C 0 1 N N R N N N 33.433 22.682 27.482 -0.858 -0.193 0.175 C1 S13 12
S13 O5 O5 O 0 1 N N N N N N 33.185 21.279 27.717 -1.632 0.956 0.497 O5 S13 13
S13 C5 C5 C 0 1 N N R N N N 31.999 20.772 27.042 -2.919 0.990 -0.127 C5 S13 14
S13 C6 C6 C 0 1 N N N N N N 31.859 19.310 27.469 -3.654 2.265 0.289 C6 S13 15
S13 O6 O6 O 0 1 N N N N N N 32.930 18.545 26.910 -2.957 3.405 -0.218 O6 S13 16
S13 C4 C4 C 0 1 N N S N N N 32.142 20.937 25.518 -3.728 -0.233 0.311 C4 S13 17
S13 O4 O4 O 0 1 N N N N N N 30.964 20.461 24.843 -4.997 -0.225 -0.347 O4 S13 18
S13 C3 C3 C 0 1 N N S N N N 32.409 22.407 25.153 -2.964 -1.506 -0.065 C3 S13 19
S13 O3 O3 O 0 1 N N N N N N 32.689 22.511 23.753 -3.684 -2.650 0.397 O3 S13 20
S13 C2 C2 C 0 1 N N R N N N 33.595 22.967 25.967 -1.581 -1.470 0.595 C2 S13 21
S13 O2 O2 O 0 1 N N N N N N 33.722 24.374 25.739 -0.823 -2.607 0.177 O2 S13 22
S13 H10 H10 H 0 1 N N N N N N 36.727 24.134 29.688 3.232 2.211 1.111 H10 S13 23
S13 H11 H11 H 0 1 N N N N N N 37.948 24.923 31.695 5.642 1.724 1.242 H11 S13 24
S13 H151 1H15 H 0 0 N N N N N N 37.986 25.790 33.879 7.167 -0.985 1.078 H151 S13 25
S13 H152 2H15 H 0 0 N N N N N N 36.503 26.639 34.432 7.278 -0.930 -0.698 H152 S13 26
S13 H153 3H15 H 0 0 N N N N N N 36.806 24.940 34.933 7.525 0.553 0.255 H153 S13 27
S13 H13 H13 H 0 1 N N N N N N 34.242 25.286 33.815 5.048 -1.829 -1.040 H13 S13 28
S13 H14 H14 H 0 1 N N N N N N 33.021 24.504 31.810 2.639 -1.340 -1.176 H14 S13 29
S13 H8 H8 H 0 1 N N N N N N 34.702 23.976 30.394 1.126 1.824 0.060 H8 S13 30
S13 H71 1H7 H 0 1 N N N N N N 35.291 22.250 28.550 0.966 -1.104 0.967 H71 S13 31
S13 H72 2H7 H 0 1 N N N N N N 35.343 23.761 27.680 0.437 0.370 1.846 H72 S13 32
S13 HN1 HN1 H 0 1 N N N N N N 32.586 24.963 29.313 1.386 -0.292 -1.903 HN1 S13 33
S13 H5 H5 H 0 1 N N N N N N 31.091 21.329 27.317 -2.797 0.978 -1.210 H5 S13 34
S13 H61 1H6 H 0 1 N N N N N N 30.898 18.913 27.109 -4.667 2.249 -0.114 H61 S13 35
S13 H62 2H6 H 0 1 N N N N N N 31.895 19.244 28.566 -3.698 2.321 1.377 H62 S13 36
S13 HO6 HO6 H 0 1 N N N N N N 32.753 18.375 25.992 -3.368 4.251 0.008 HO6 S13 37
S13 H4 H4 H 0 1 N N N N N N 33.001 20.334 25.188 -3.878 -0.203 1.390 H4 S13 38
S13 HO4 HO4 H 0 1 N N N N N N 30.259 20.356 25.471 -5.535 0.556 -0.156 HO4 S13 39
S13 H3 H3 H 0 1 N N N N N N 31.513 22.997 25.395 -2.851 -1.557 -1.148 H3 S13 40
S13 HO3 HO3 H 0 1 N N N N N N 31.873 22.534 23.267 -4.574 -2.732 0.026 HO3 S13 41
S13 H2 H2 H 0 1 N N N N N N 34.509 22.458 25.628 -1.694 -1.484 1.679 H2 S13 42
S13 HO2 HO2 H 0 1 N N N N N N 33.750 24.829 26.572 -1.227 -3.455 0.408 HO2 S13 43
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
S13 O3 C3 SING N N 1
S13 O4 C4 SING N N 2
S13 C3 C4 SING N N 3
S13 C3 C2 SING N N 4
S13 C4 C5 SING N N 5
S13 O2 C2 SING N N 6
S13 C2 C1 SING N N 7
S13 O6 C6 SING N N 8
S13 C5 C6 SING N N 9
S13 C5 O5 SING N N 10
S13 C1 O5 SING N N 11
S13 C1 O7 SING N N 12
S13 C1 C7 SING N N 13
S13 O7 N1 SING N N 14
S13 C7 C8 SING N N 15
S13 N1 C8 SING N N 16
S13 C8 C9 SING N N 17
S13 C10 C9 DOUB Y N 18
S13 C10 C11 SING Y N 19
S13 C9 C14 SING Y N 20
S13 C11 C12 DOUB Y N 21
S13 C14 C13 DOUB Y N 22
S13 C12 C13 SING Y N 23
S13 C12 C15 SING N N 24
S13 C10 H10 SING N N 25
S13 C11 H11 SING N N 26
S13 C15 H151 SING N N 27
S13 C15 H152 SING N N 28
S13 C15 H153 SING N N 29
S13 C13 H13 SING N N 30
S13 C14 H14 SING N N 31
S13 C8 H8 SING N N 32
S13 C7 H71 SING N N 33
S13 C7 H72 SING N N 34
S13 N1 HN1 SING N N 35
S13 C5 H5 SING N N 36
S13 C6 H61 SING N N 37
S13 C6 H62 SING N N 38
S13 O6 HO6 SING N N 39
S13 C4 H4 SING N N 40
S13 O4 HO4 SING N N 41
S13 C3 H3 SING N N 42
S13 O3 HO3 SING N N 43
S13 C2 H2 SING N N 44
S13 O2 HO2 SING N N 45
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
S13 SMILES ACDLabs 10.04 O1C(C(O)C(O)C(O)C13ONC(c2ccc(cc2)C)C3)CO
S13 SMILES_CANONICAL CACTVS 3.341 Cc1ccc(cc1)[C@@H]2C[C@]3(ON2)O[C@H](CO)[C@@H](O)[C@H](O)[C@H]3O
S13 SMILES CACTVS 3.341 Cc1ccc(cc1)[CH]2C[C]3(ON2)O[CH](CO)[CH](O)[CH](O)[CH]3O
S13 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 Cc1ccc(cc1)C2C[C@]3([C@@H]([C@H]([C@@H]([C@H](O3)CO)O)O)O)ON2
S13 SMILES "OpenEye OEToolkits" 1.5.0 Cc1ccc(cc1)C2CC3(C(C(C(C(O3)CO)O)O)O)ON2
S13 InChI InChI 1.03 InChI=1S/C15H21NO6/c1-8-2-4-9(5-3-8)10-6-15(22-16-10)14(20)13(19)12(18)11(7-17)21-15/h2-5,10-14,16-20H,6-7H2,1H3/t10-,11+,12+,13-,14+,15+/m0/s1
S13 InChIKey InChI 1.03 HRCKGDOSPBFICB-MZHQWRCYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
S13 "SYSTEMATIC NAME" ACDLabs 10.04 (3S,5R,7R,8S,9S,10R)-7-(hydroxymethyl)-3-(4-methylphenyl)-1,6-dioxa-2-azaspiro[4.5]decane-8,9,10-triol
S13 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (5R,6R,7S,8S,9R)-9-(hydroxymethyl)-3-(4-methylphenyl)-1,10-dioxa-2-azaspiro[4.5]decane-6,7,8-triol
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
S13 'Create component' 2007-09-04 EBI
S13 'Modify aromatic_flag' 2011-06-04 RCSB
S13 'Modify descriptor' 2011-06-04 RCSB
S13 'Modify synonyms' 2021-03-13 RCSB
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id S13
_pdbx_chem_comp_synonyms.name "(1R)-3'-(4-methylphenyl)-spiro[1,5-anhydro-D-glucitol-1,5'-isoxazoline]"
_pdbx_chem_comp_synonyms.provenance PDB
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_drugbank_details.comp_id S13
_pdbe_chem_comp_drugbank_details.drugbank_id DB08503
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name
'(3S,5R,7R,8S,9S,10R)-7-(hydroxymethyl)-3-(4-methylphenyl)-1,6-dioxa-2-azaspiro[4.5]decane-8,9,10-triol'
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number ?
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
_pdbe_chem_comp_synonyms.comp_id S13
_pdbe_chem_comp_synonyms.name "(1R)-3'-(4-methylphenyl)-spiro[1,5-anhydro-D-glucitol-1,5'-isoxazoline]"
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_drugbank_classification.comp_id S13
_pdbe_chem_comp_drugbank_classification.drugbank_id DB08503
_pdbe_chem_comp_drugbank_classification.parent 'C-glycosyl compounds'
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Organooxygen compounds'
_pdbe_chem_comp_drugbank_classification.superclass 'Organic oxygen compounds'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as c-glycosyl compounds. These are glycoside in which a sugar group is bonded through one carbon to another group via a C-glycosidic bond.'
#
_pdbe_chem_comp_drugbank_targets.comp_id S13
_pdbe_chem_comp_drugbank_targets.drugbank_id DB08503
_pdbe_chem_comp_drugbank_targets.name 'Glycogen phosphorylase, muscle form'
_pdbe_chem_comp_drugbank_targets.organism Humans
_pdbe_chem_comp_drugbank_targets.uniprot_id P11217
_pdbe_chem_comp_drugbank_targets.pharmacologically_active unknown
_pdbe_chem_comp_drugbank_targets.ordinal 1
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
S13 C10 C 12.857 0.585 1
S13 C11 C 14.071 1.467 2
S13 C12 C 13.914 2.958 3
S13 C15 C 15.127 3.840 4
S13 C13 C 12.544 3.568 5
S13 C14 C 11.330 2.687 6
S13 C9 C 11.487 1.195 7
S13 C8 C 10.273 0.313 8
S13 C7 C 8.847 0.777 9
S13 N1 N 10.273 -1.187 10
S13 O7 O 8.847 -1.650 11
S13 C1 C 7.965 -0.437 12
S13 O5 O 7.215 0.862 13
S13 C5 C 5.715 0.862 14
S13 C6 C 4.965 2.162 15
S13 O6 O 3.465 2.162 16
S13 C4 C 4.965 -0.437 17
S13 O4 O 3.465 -0.437 18
S13 C3 C 5.715 -1.736 19
S13 O3 O 4.965 -3.035 20
S13 C2 C 7.215 -1.736 21
S13 O2 O 7.965 -3.035 22
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
S13 C3 O3 SINGLE BEGINWEDGE 1
S13 C4 O4 SINGLE BEGINDASH 2
S13 C3 C4 SINGLE NONE 3
S13 C3 C2 SINGLE NONE 4
S13 C4 C5 SINGLE NONE 5
S13 C2 O2 SINGLE BEGINDASH 6
S13 C2 C1 SINGLE NONE 7
S13 O6 C6 SINGLE NONE 8
S13 C5 C6 SINGLE BEGINWEDGE 9
S13 C5 O5 SINGLE NONE 10
S13 C1 O5 SINGLE NONE 11
S13 C1 O7 SINGLE NONE 12
S13 C1 C7 SINGLE BEGINWEDGE 13
S13 O7 N1 SINGLE NONE 14
S13 C7 C8 SINGLE NONE 15
S13 N1 C8 SINGLE NONE 16
S13 C8 C9 SINGLE NONE 17
S13 C10 C9 DOUBLE NONE 18
S13 C10 C11 SINGLE NONE 19
S13 C9 C14 SINGLE NONE 20
S13 C11 C12 DOUBLE NONE 21
S13 C14 C13 DOUBLE NONE 22
S13 C12 C13 SINGLE NONE 23
S13 C12 C15 SINGLE NONE 24
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
S13 MurckoScaffold S1 scaffold 'c1ccc(C2C[C@]3(CCCCO3)ON2)cc1' InChI=1S/C13H17NO2/c1-2-6-11(7-3-1)12-10-13(16-14-12)8-4-5-9-15-13/h1-3,6-7,12,14H,4-5,8-10H2/t12?,13-/m0/s1 XURNHVFLJHLCAZ-ABLWVSNPSA-N
S13 phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
S13 pyranose F2 fragment OC1CCCCO1 InChI=1S/C5H10O2/c6-5-3-1-2-4-7-5/h5-6H,1-4H2 CELWCAITJAEQNL-UHFFFAOYSA-N
S13 Z382816560 F3 fragment NC(CCO)c1ccccc1 InChI=1S/C9H13NO/c10-9(6-7-11)8-4-2-1-3-5-8/h1-5,9,11H,6-7,10H2 SEQXIQNPMQTBGN-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
S13 C10 S1 1
S13 C11 S1 1
S13 C12 S1 1
S13 C13 S1 1
S13 C14 S1 1
S13 C9 S1 1
S13 C8 S1 1
S13 C7 S1 1
S13 N1 S1 1
S13 O7 S1 1
S13 C1 S1 1
S13 O5 S1 1
S13 C5 S1 1
S13 C4 S1 1
S13 C3 S1 1
S13 C2 S1 1
S13 C10 F1 1
S13 C9 F1 1
S13 C14 F1 1
S13 C13 F1 1
S13 C12 F1 1
S13 C11 F1 1
S13 C4 F2 1
S13 C5 F2 1
S13 O5 F2 1
S13 C1 F2 1
S13 C2 F2 1
S13 C3 F2 1
S13 O7 F2 1
S13 N1 F3 1
S13 C8 F3 1
S13 C7 F3 1
S13 C1 F3 1
S13 O5 F3 1
S13 C9 F3 1
S13 C10 F3 1
S13 C11 F3 1
S13 C12 F3 1
S13 C13 F3 1
S13 C14 F3 1
S13 N1 F3 2
S13 C8 F3 2
S13 C7 F3 2
S13 C1 F3 2
S13 O7 F3 2
S13 C9 F3 2
S13 C10 F3 2
S13 C11 F3 2
S13 C12 F3 2
S13 C13 F3 2
S13 C14 F3 2
#
_pdbe_chem_comp_rdkit_properties.comp_id S13
_pdbe_chem_comp_rdkit_properties.exactmw 311.137
_pdbe_chem_comp_rdkit_properties.amw 311.334
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 7
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 5
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 7
_pdbe_chem_comp_rdkit_properties.NumHBD 5
_pdbe_chem_comp_rdkit_properties.NumHBA 7
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 22
_pdbe_chem_comp_rdkit_properties.NumAtoms 43
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 7
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.600
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 2
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 1
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 6
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.labuteASA 157.521
_pdbe_chem_comp_rdkit_properties.tpsa 111.410
_pdbe_chem_comp_rdkit_properties.CrippenClogP -0.978
_pdbe_chem_comp_rdkit_properties.CrippenMR 74.936
_pdbe_chem_comp_rdkit_properties.chi0v 10.397
_pdbe_chem_comp_rdkit_properties.chi1v 5.585
_pdbe_chem_comp_rdkit_properties.chi2v 2.666
_pdbe_chem_comp_rdkit_properties.chi3v 2.666
_pdbe_chem_comp_rdkit_properties.chi4v 1.652
_pdbe_chem_comp_rdkit_properties.chi0n 31.397
_pdbe_chem_comp_rdkit_properties.chi1n 15.665
_pdbe_chem_comp_rdkit_properties.chi2n 2.666
_pdbe_chem_comp_rdkit_properties.chi3n 2.666
_pdbe_chem_comp_rdkit_properties.chi4n 1.652
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.060
_pdbe_chem_comp_rdkit_properties.kappa1 4.312
_pdbe_chem_comp_rdkit_properties.kappa2 5.859
_pdbe_chem_comp_rdkit_properties.kappa3 2.545
_pdbe_chem_comp_rdkit_properties.Phi 1.148
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
S13 UniChem DrugBank DB08503
S13 UniChem PDBe S13
S13 UniChem ZINC ZINC000038965475
S13 UniChem PubChem 46937157
S13 UniChem 'Probes And Drugs' PD004798
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
S13 C10 2.414 -0.388 -0.300 ETKDGv3 1
S13 C11 3.654 -0.409 -1.102 ETKDGv3 2
S13 C12 4.629 0.484 -0.867 ETKDGv3 3
S13 C15 5.904 0.442 -1.655 ETKDGv3 4
S13 C13 4.464 1.469 0.228 ETKDGv3 5
S13 C14 3.343 1.485 0.959 ETKDGv3 6
S13 C9 2.255 0.512 0.691 ETKDGv3 7
S13 C8 0.983 0.563 1.526 ETKDGv3 8
S13 C7 -0.237 0.889 0.704 ETKDGv3 9
S13 N1 0.680 -0.717 2.157 ETKDGv3 10
S13 O7 -0.201 -1.385 1.356 ETKDGv3 11
S13 C1 -1.032 -0.421 0.738 ETKDGv3 12
S13 O5 -1.249 -0.880 -0.599 ETKDGv3 13
S13 C5 -2.502 -0.542 -1.183 ETKDGv3 14
S13 C6 -2.578 0.954 -1.555 ETKDGv3 15
S13 O6 -3.636 1.184 -2.449 ETKDGv3 16
S13 C4 -3.720 -1.050 -0.349 ETKDGv3 17
S13 O4 -4.292 -2.193 -0.937 ETKDGv3 18
S13 C3 -3.349 -1.339 1.115 ETKDGv3 19
S13 O3 -4.512 -1.294 1.904 ETKDGv3 20
S13 C2 -2.345 -0.289 1.585 ETKDGv3 21
S13 O2 -2.082 -0.469 2.955 ETKDGv3 22
S13 H10 1.639 -1.108 -0.526 ETKDGv3 23
S13 H11 3.764 -1.153 -1.882 ETKDGv3 24
S13 H151 6.432 1.417 -1.597 ETKDGv3 25
S13 H152 6.566 -0.350 -1.246 ETKDGv3 26
S13 H153 5.694 0.226 -2.724 ETKDGv3 27
S13 H13 5.251 2.182 0.440 ETKDGv3 28
S13 H14 3.237 2.215 1.752 ETKDGv3 29
S13 H8 1.096 1.324 2.330 ETKDGv3 30
S13 H71 -0.792 1.737 1.163 ETKDGv3 31
S13 H72 0.033 1.186 -0.333 ETKDGv3 32
S13 HN1 1.539 -1.308 2.251 ETKDGv3 33
S13 H5 -2.528 -1.075 -2.159 ETKDGv3 34
S13 H61 -2.673 1.598 -0.653 ETKDGv3 35
S13 H62 -1.636 1.242 -2.067 ETKDGv3 36
S13 HO6 -4.406 1.510 -1.916 ETKDGv3 37
S13 H4 -4.506 -0.264 -0.347 ETKDGv3 38
S13 HO4 -3.587 -2.892 -0.982 ETKDGv3 39
S13 H3 -2.878 -2.350 1.188 ETKDGv3 40
S13 HO3 -4.332 -1.834 2.718 ETKDGv3 41
S13 H2 -2.817 0.711 1.441 ETKDGv3 42
S13 HO2 -1.689 0.380 3.286 ETKDGv3 43
#