data_S1O # _chem_comp.id S1O _chem_comp.name {1-[(3S)-1-(7H-pyrrolo[2,3-d]pyrimidin-4-yl)piperidin-3-yl]-1H-1,2,3-triazol-4-yl}methanol _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C14 H17 N7 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-06-23 _chem_comp.pdbx_modified_date 2022-07-08 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 299.331 _chem_comp.one_letter_code ? _chem_comp.three_letter_code S1O _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5SOT _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal S1O C02 C1 C 0 1 N N N N N N -46.134 -24.718 -0.583 -2.874 2.919 0.492 C02 S1O 1 S1O C03 C2 C 0 1 Y N N N N N -46.398 -26.125 -0.101 -3.021 1.419 0.478 C03 S1O 2 S1O C04 C3 C 0 1 Y N N N N N -45.479 -27.157 -0.226 -2.056 0.513 0.199 C04 S1O 3 S1O C06 C4 C 0 1 N N S N N N -45.412 -29.573 0.452 -1.977 -1.993 0.092 C06 S1O 4 S1O C07 C5 C 0 1 N N N N N N -44.036 -29.553 0.014 -1.986 -2.332 -1.402 C07 S1O 5 S1O C08 C6 C 0 1 N N N N N N -43.112 -29.046 1.022 -1.188 -1.268 -2.162 C08 S1O 6 S1O C09 C7 C 0 1 N N N N N N -43.763 -28.280 2.195 0.236 -1.210 -1.605 C09 S1O 7 S1O C11 C8 C 0 1 Y N N N N N -45.094 -29.031 4.305 1.463 -0.694 0.333 C11 S1O 8 S1O C12 C9 C 0 1 Y N N N N N -46.369 -28.964 4.939 2.330 0.251 -0.236 C12 S1O 9 S1O C13 C10 C 0 1 Y N N N N N -47.717 -28.841 4.529 2.244 1.203 -1.342 C13 S1O 10 S1O C14 C11 C 0 1 Y N N N N N -48.517 -28.838 5.669 3.424 1.842 -1.397 C14 S1O 11 S1O C16 C12 C 0 1 Y N N N N N -46.429 -29.031 6.308 3.618 0.401 0.312 C16 S1O 12 S1O C18 C13 C 0 1 Y N N N N N -44.110 -29.211 6.391 3.114 -1.234 1.851 C18 S1O 13 S1O C20 C14 C 0 1 N N N N N N -45.524 -30.024 1.925 -0.530 -1.914 0.584 C20 S1O 14 S1O N05 N1 N 0 1 Y N N N N N -46.031 -28.205 0.337 -2.638 -0.703 0.306 N05 S1O 15 S1O N10 N2 N 0 1 N N N N N N -44.963 -28.960 2.856 0.190 -0.883 -0.174 N10 S1O 16 S1O N15 N3 N 0 1 Y N N N N N -47.725 -28.954 6.728 4.254 1.372 -0.412 N15 S1O 17 S1O N17 N4 N 0 1 Y N N N N N -45.274 -29.155 7.007 3.961 -0.360 1.350 N17 S1O 18 S1O N19 N5 N 0 1 Y N N N N N -44.012 -29.152 5.067 1.898 -1.408 1.367 N19 S1O 19 S1O N21 N6 N 0 1 Y N N N N N -47.254 -27.885 0.816 -3.873 -0.533 0.628 N21 S1O 20 S1O N22 N7 N 0 1 Y N N N N N -47.473 -26.568 0.546 -4.131 0.722 0.744 N22 S1O 21 S1O O01 O1 O 0 1 N N N N N N -44.945 -24.481 0.093 -1.530 3.269 0.153 O01 S1O 22 S1O H022 H1 H 0 0 N N N N N N -46.005 -24.673 -1.674 -3.558 3.359 -0.234 H022 S1O 23 S1O H021 H2 H 0 0 N N N N N N -46.929 -24.021 -0.278 -3.107 3.298 1.487 H021 S1O 24 S1O H041 H3 H 0 0 N N N N N N -44.506 -27.107 -0.692 -1.027 0.719 -0.058 H041 S1O 25 S1O H061 H4 H 0 0 N N N N N N -45.987 -30.275 -0.169 -2.507 -2.770 0.643 H061 S1O 26 S1O H072 H5 H 0 0 N N N N N N -43.738 -30.580 -0.246 -1.529 -3.309 -1.556 H072 S1O 27 S1O H071 H6 H 0 0 N N N N N N -43.964 -28.913 -0.878 -3.013 -2.346 -1.766 H071 S1O 28 S1O H081 H7 H 0 0 N N N N N N -42.563 -29.903 1.440 -1.154 -1.527 -3.220 H081 S1O 29 S1O H082 H8 H 0 0 N N N N N N -42.406 -28.366 0.523 -1.667 -0.297 -2.039 H082 S1O 30 S1O H092 H9 H 0 0 N N N N N N -42.994 -28.130 2.967 0.719 -2.178 -1.740 H092 S1O 31 S1O H091 H10 H 0 0 N N N N N N -44.097 -27.303 1.815 0.802 -0.444 -2.134 H091 S1O 32 S1O H131 H11 H 0 0 N N N N N N -48.065 -28.763 3.510 1.395 1.361 -1.990 H131 S1O 33 S1O H141 H12 H 0 0 N N N N N N -49.594 -28.756 5.688 3.680 2.612 -2.110 H141 S1O 34 S1O H181 H13 H 0 0 N N N N N N -43.210 -29.308 6.979 3.428 -1.834 2.693 H181 S1O 35 S1O H201 H14 H 0 0 N N N N N N -46.582 -30.197 2.170 -0.521 -1.659 1.644 H201 S1O 36 S1O H202 H15 H 0 0 N N N N N N -44.958 -30.958 2.061 -0.044 -2.878 0.438 H202 S1O 37 S1O H151 H16 H 0 0 N N N N N N -48.029 -28.981 7.680 5.159 1.681 -0.253 H151 S1O 38 S1O H011 H17 H 0 0 N N N N N N -44.634 -23.606 -0.109 -1.362 4.221 0.142 H011 S1O 39 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal S1O C02 C03 SING N N 1 S1O C02 O01 SING N N 2 S1O C04 C03 DOUB Y N 3 S1O C04 N05 SING Y N 4 S1O C03 N22 SING Y N 5 S1O C07 C06 SING N N 6 S1O C07 C08 SING N N 7 S1O N05 C06 SING N N 8 S1O N05 N21 SING Y N 9 S1O C06 C20 SING N N 10 S1O N22 N21 DOUB Y N 11 S1O C08 C09 SING N N 12 S1O C20 N10 SING N N 13 S1O C09 N10 SING N N 14 S1O N10 C11 SING N N 15 S1O C11 C12 DOUB Y N 16 S1O C11 N19 SING Y N 17 S1O C13 C12 SING Y N 18 S1O C13 C14 DOUB Y N 19 S1O C12 C16 SING Y N 20 S1O N19 C18 DOUB Y N 21 S1O C14 N15 SING Y N 22 S1O C16 N15 SING Y N 23 S1O C16 N17 DOUB Y N 24 S1O C18 N17 SING Y N 25 S1O C02 H022 SING N N 26 S1O C02 H021 SING N N 27 S1O C04 H041 SING N N 28 S1O C06 H061 SING N N 29 S1O C07 H072 SING N N 30 S1O C07 H071 SING N N 31 S1O C08 H081 SING N N 32 S1O C08 H082 SING N N 33 S1O C09 H092 SING N N 34 S1O C09 H091 SING N N 35 S1O C13 H131 SING N N 36 S1O C14 H141 SING N N 37 S1O C18 H181 SING N N 38 S1O C20 H201 SING N N 39 S1O C20 H202 SING N N 40 S1O N15 H151 SING N N 41 S1O O01 H011 SING N N 42 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor S1O SMILES ACDLabs 12.01 OCc1cn(nn1)C1CN(CCC1)c1ncnc2[NH]ccc21 S1O InChI InChI 1.06 InChI=1S/C14H17N7O/c22-8-10-6-21(19-18-10)11-2-1-5-20(7-11)14-12-3-4-15-13(12)16-9-17-14/h3-4,6,9,11,22H,1-2,5,7-8H2,(H,15,16,17)/t11-/m0/s1 S1O InChIKey InChI 1.06 ASNUGOSBOWLSJV-NSHDSACASA-N S1O SMILES_CANONICAL CACTVS 3.385 OCc1cn(nn1)[C@H]2CCCN(C2)c3ncnc4[nH]ccc34 S1O SMILES CACTVS 3.385 OCc1cn(nn1)[CH]2CCCN(C2)c3ncnc4[nH]ccc34 S1O SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 c1c[nH]c2c1c(ncn2)N3CCC[C@@H](C3)n4cc(nn4)CO S1O SMILES "OpenEye OEToolkits" 2.0.7 c1c[nH]c2c1c(ncn2)N3CCCC(C3)n4cc(nn4)CO # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier S1O "SYSTEMATIC NAME" ACDLabs 12.01 {1-[(3S)-1-(7H-pyrrolo[2,3-d]pyrimidin-4-yl)piperidin-3-yl]-1H-1,2,3-triazol-4-yl}methanol S1O "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[1-[(3~{S})-1-(7~{H}-pyrrolo[2,3-d]pyrimidin-4-yl)piperidin-3-yl]-1,2,3-triazol-4-yl]methanol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site S1O 'Create component' 2022-06-23 RCSB S1O 'Initial release' 2022-07-13 RCSB # loop_ _software.name _software.version _software.description rdkit 2023.03.3 'Core functionality.' pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.' # loop_ _pdbe_chem_comp_atom_depiction.comp_id _pdbe_chem_comp_atom_depiction.atom_id _pdbe_chem_comp_atom_depiction.element _pdbe_chem_comp_atom_depiction.model_Cartn_x _pdbe_chem_comp_atom_depiction.model_Cartn_y _pdbe_chem_comp_atom_depiction.pdbx_ordinal S1O C02 C 4.807 3.492 1 S1O C03 C 6.298 3.648 2 S1O C04 C 7.302 2.534 3 S1O C06 C 9.971 2.394 4 S1O C07 C 11.270 3.144 5 S1O C08 C 12.569 2.394 6 S1O C09 C 12.569 0.894 7 S1O C11 C 11.270 -1.356 8 S1O C12 C 12.569 -2.106 9 S1O C13 C 13.989 -1.649 10 S1O C14 C 14.864 -2.856 11 S1O C16 C 12.569 -3.606 12 S1O C18 C 9.971 -3.606 13 S1O C20 C 9.971 0.894 14 S1O N05 N 8.672 3.144 15 S1O N10 N 11.270 0.144 16 S1O N15 N 13.989 -4.063 17 S1O N17 N 11.270 -4.356 18 S1O N19 N 9.971 -2.106 19 S1O N21 N 8.516 4.636 20 S1O N22 N 7.048 4.947 21 S1O O01 O 3.925 4.705 22 # loop_ _pdbe_chem_comp_bond_depiction.comp_id _pdbe_chem_comp_bond_depiction.atom_id_1 _pdbe_chem_comp_bond_depiction.atom_id_2 _pdbe_chem_comp_bond_depiction.value_order _pdbe_chem_comp_bond_depiction.bond_dir _pdbe_chem_comp_bond_depiction.pdbx_ordinal S1O C02 C03 SINGLE NONE 1 S1O C02 O01 SINGLE NONE 2 S1O C04 C03 DOUBLE NONE 3 S1O C04 N05 SINGLE NONE 4 S1O C03 N22 SINGLE NONE 5 S1O C07 C06 SINGLE NONE 6 S1O C07 C08 SINGLE NONE 7 S1O C06 N05 SINGLE BEGINWEDGE 8 S1O N05 N21 SINGLE NONE 9 S1O C06 C20 SINGLE NONE 10 S1O N22 N21 DOUBLE NONE 11 S1O C08 C09 SINGLE NONE 12 S1O C20 N10 SINGLE NONE 13 S1O C09 N10 SINGLE NONE 14 S1O N10 C11 SINGLE NONE 15 S1O C11 C12 DOUBLE NONE 16 S1O C11 N19 SINGLE NONE 17 S1O C13 C12 SINGLE NONE 18 S1O C13 C14 DOUBLE NONE 19 S1O C12 C16 SINGLE NONE 20 S1O N19 C18 DOUBLE NONE 21 S1O C14 N15 SINGLE NONE 22 S1O C16 N15 SINGLE NONE 23 S1O C16 N17 DOUBLE NONE 24 S1O C18 N17 SINGLE NONE 25 # loop_ _pdbe_chem_comp_substructure.comp_id _pdbe_chem_comp_substructure.substructure_name _pdbe_chem_comp_substructure.id _pdbe_chem_comp_substructure.substructure_type _pdbe_chem_comp_substructure.substructure_smiles _pdbe_chem_comp_substructure.substructure_inchis _pdbe_chem_comp_substructure.substructure_inchikeys S1O MurckoScaffold S1 scaffold 'c1cn([C@H]2CCCN(c3ncnc4[nH]ccc34)C2)nn1' InChI=1S/C13H15N7/c1-2-10(20-7-5-17-18-20)8-19(6-1)13-11-3-4-14-12(11)15-9-16-13/h3-5,7,9-10H,1-2,6,8H2,(H,14,15,16)/t10-/m0/s1 PBQVKVZTEQHWEM-JTQLQIEISA-N S1O pyrimidine F1 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N S1O pyrrole F2 fragment 'c1cc[nH]c1' InChI=1S/C4H5N/c1-2-4-5-3-1/h1-5H KAESVJOAVNADME-UHFFFAOYSA-N # loop_ _pdbe_chem_comp_substructure_mapping.comp_id _pdbe_chem_comp_substructure_mapping.atom_id _pdbe_chem_comp_substructure_mapping.substructure_id _pdbe_chem_comp_substructure_mapping.substructure_ordinal S1O C03 S1 1 S1O C04 S1 1 S1O C06 S1 1 S1O C07 S1 1 S1O C08 S1 1 S1O C09 S1 1 S1O C11 S1 1 S1O C12 S1 1 S1O C13 S1 1 S1O C14 S1 1 S1O C16 S1 1 S1O C18 S1 1 S1O C20 S1 1 S1O N05 S1 1 S1O N10 S1 1 S1O N15 S1 1 S1O N17 S1 1 S1O N19 S1 1 S1O N21 S1 1 S1O N22 S1 1 S1O C12 F1 1 S1O C11 F1 1 S1O N19 F1 1 S1O C18 F1 1 S1O N17 F1 1 S1O C16 F1 1 S1O C14 F2 1 S1O C13 F2 1 S1O C12 F2 1 S1O C16 F2 1 S1O N15 F2 1 # _pdbe_chem_comp_rdkit_properties.comp_id S1O _pdbe_chem_comp_rdkit_properties.exactmw 299.149 _pdbe_chem_comp_rdkit_properties.amw 299.338 _pdbe_chem_comp_rdkit_properties.lipinskiHBA 8 _pdbe_chem_comp_rdkit_properties.lipinskiHBD 2 _pdbe_chem_comp_rdkit_properties.NumRotatableBonds 4 _pdbe_chem_comp_rdkit_properties.NumHBD 2 _pdbe_chem_comp_rdkit_properties.NumHBA 7 _pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 22 _pdbe_chem_comp_rdkit_properties.NumAtoms 39 _pdbe_chem_comp_rdkit_properties.NumHeteroatoms 8 _pdbe_chem_comp_rdkit_properties.NumAmideBonds 0 _pdbe_chem_comp_rdkit_properties.FractionCSP3 0.429 _pdbe_chem_comp_rdkit_properties.NumRings 4 _pdbe_chem_comp_rdkit_properties.NumAromaticRings 3 _pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1 _pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1 _pdbe_chem_comp_rdkit_properties.NumHeterocycles 4 _pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 3 _pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1 _pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1 _pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0 _pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0 _pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1 _pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0 _pdbe_chem_comp_rdkit_properties.labuteASA 150.381 _pdbe_chem_comp_rdkit_properties.tpsa 95.750 _pdbe_chem_comp_rdkit_properties.CrippenClogP 0.019 _pdbe_chem_comp_rdkit_properties.CrippenMR 77.022 _pdbe_chem_comp_rdkit_properties.chi0v 10.539 _pdbe_chem_comp_rdkit_properties.chi1v 5.787 _pdbe_chem_comp_rdkit_properties.chi2v 2.634 _pdbe_chem_comp_rdkit_properties.chi3v 2.634 _pdbe_chem_comp_rdkit_properties.chi4v 1.712 _pdbe_chem_comp_rdkit_properties.chi0n 27.539 _pdbe_chem_comp_rdkit_properties.chi1n 14.143 _pdbe_chem_comp_rdkit_properties.chi2n 2.634 _pdbe_chem_comp_rdkit_properties.chi3n 2.634 _pdbe_chem_comp_rdkit_properties.chi4n 1.712 _pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.480 _pdbe_chem_comp_rdkit_properties.kappa1 4.287 _pdbe_chem_comp_rdkit_properties.kappa2 5.375 _pdbe_chem_comp_rdkit_properties.kappa3 2.209 _pdbe_chem_comp_rdkit_properties.Phi 1.047 # _pdbe_chem_comp_external_mappings.comp_id S1O _pdbe_chem_comp_external_mappings.source UniChem _pdbe_chem_comp_external_mappings.resource PDBe _pdbe_chem_comp_external_mappings.resource_id S1O # loop_ _pdbe_chem_comp_rdkit_conformer.comp_id _pdbe_chem_comp_rdkit_conformer.atom_id _pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit _pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit _pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit _pdbe_chem_comp_rdkit_conformer.rdkit_method _pdbe_chem_comp_rdkit_conformer.rdkit_ordinal S1O C02 6.069 -0.865 -0.032 ETKDGv3 1 S1O C03 4.688 -0.328 -0.236 ETKDGv3 2 S1O C04 3.714 -0.330 0.658 ETKDGv3 3 S1O C06 1.169 -0.055 0.448 ETKDGv3 4 S1O C07 0.943 0.563 1.859 ETKDGv3 5 S1O C08 0.052 1.813 1.833 ETKDGv3 6 S1O C09 -1.309 1.499 1.191 ETKDGv3 7 S1O C11 -2.192 -0.325 -0.320 ETKDGv3 8 S1O C12 -3.492 -0.007 -0.355 ETKDGv3 9 S1O C13 -4.252 1.231 -0.193 ETKDGv3 10 S1O C14 -5.544 0.946 -0.412 ETKDGv3 11 S1O C16 -4.465 -1.001 -0.694 ETKDGv3 12 S1O C18 -2.750 -2.586 -0.950 ETKDGv3 13 S1O C20 0.167 0.491 -0.592 ETKDGv3 14 S1O N05 2.551 0.156 0.001 ETKDGv3 15 S1O N10 -1.162 0.626 0.014 ETKDGv3 16 S1O N15 -5.760 -0.436 -0.728 ETKDGv3 17 S1O N17 -4.147 -2.223 -0.992 ETKDGv3 18 S1O N19 -1.841 -1.694 -0.638 ETKDGv3 19 S1O N21 2.935 0.361 -1.331 ETKDGv3 20 S1O N22 4.169 0.100 -1.493 ETKDGv3 21 S1O O01 6.076 -2.255 -0.203 ETKDGv3 22 S1O H022 6.773 -0.380 -0.746 ETKDGv3 23 S1O H021 6.412 -0.627 0.997 ETKDGv3 24 S1O H041 3.766 -0.695 1.676 ETKDGv3 25 S1O H061 1.001 -1.152 0.524 ETKDGv3 26 S1O H072 1.907 0.829 2.342 ETKDGv3 27 S1O H071 0.459 -0.196 2.513 ETKDGv3 28 S1O H081 -0.103 2.185 2.869 ETKDGv3 29 S1O H082 0.563 2.617 1.259 ETKDGv3 30 S1O H092 -1.946 0.997 1.953 ETKDGv3 31 S1O H091 -1.791 2.452 0.895 ETKDGv3 32 S1O H131 -3.869 2.217 0.025 ETKDGv3 33 S1O H141 -6.339 1.678 -0.377 ETKDGv3 34 S1O H181 -2.451 -3.598 -1.183 ETKDGv3 35 S1O H201 0.138 -0.175 -1.483 ETKDGv3 36 S1O H202 0.496 1.492 -0.948 ETKDGv3 37 S1O H151 -6.659 -0.902 -0.979 ETKDGv3 38 S1O H011 6.023 -2.422 -1.181 ETKDGv3 39 #