data_S1P
#
_chem_comp.id S1P
_chem_comp.name "(2S,3R,4E)-2-amino-3-hydroxyoctadec-4-en-1-yl dihydrogen phosphate"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C18 H38 N O5 P"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "sphingosine 1-phosphate"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2009-07-14
_chem_comp.pdbx_modified_date 2020-06-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 379.472
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code S1P
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3I9G
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
S1P C1 C1 C 0 1 N N N N N N 1.176 14.756 38.557 -6.232 0.235 -0.103 C1 S1P 1
S1P O1 O1 O 0 1 N N N N N N 2.576 15.024 38.468 -6.676 -1.041 0.364 O1 S1P 2
S1P C2 C2 C 0 1 N N S N N N 0.688 14.320 37.182 -4.845 0.533 0.470 C2 S1P 3
S1P N2 N2 N 0 1 N N N N N N 1.387 13.099 36.758 -4.935 0.664 1.930 N2 S1P 4
S1P C3 C3 C 0 1 N N R N N N 0.926 15.438 36.154 -4.317 1.839 -0.127 C3 S1P 5
S1P O3 O3 O 0 1 N N N N N N 0.042 16.520 36.452 -4.228 1.712 -1.548 O3 S1P 6
S1P C4 C4 C 0 1 N N N N N N 0.619 14.958 34.749 -2.950 2.133 0.437 C4 S1P 7
S1P C5 C5 C 0 1 N N N N N N 1.576 15.002 33.828 -1.937 2.329 -0.370 C5 S1P 8
S1P C6 C6 C 0 1 N N N N N N 1.297 14.528 32.422 -0.571 2.622 0.194 C6 S1P 9
S1P C7 C7 C 0 1 N N N N N N 1.727 15.648 31.470 0.438 1.615 -0.362 C7 S1P 10
S1P C8 C8 C 0 1 N N N N N N 0.517 16.100 30.691 1.825 1.913 0.210 C8 S1P 11
S1P C9 C9 C 0 1 N N N N N N -0.211 17.316 31.203 2.833 0.905 -0.345 C9 S1P 12
S1P C10 C10 C 0 1 N N N N N N -0.685 18.029 29.949 4.221 1.204 0.227 C10 S1P 13
S1P C11 C11 C 0 1 N N N N N N -2.190 17.987 29.693 5.229 0.196 -0.329 C11 S1P 14
S1P C12 C12 C 0 1 N N N N N N -2.461 18.528 28.287 6.616 0.494 0.244 C12 S1P 15
S1P C13 C13 C 0 1 N N N N N N -3.474 19.662 28.391 7.625 -0.513 -0.312 C13 S1P 16
S1P C14 C14 C 0 1 N N N N N N -3.533 20.629 27.190 9.012 -0.215 0.260 C14 S1P 17
S1P C15 C15 C 0 1 N N N N N N -2.735 21.920 27.414 10.020 -1.223 -0.295 C15 S1P 18
S1P C16 C16 C 0 1 N N N N N N -3.160 22.741 28.632 11.407 -0.924 0.277 C16 S1P 19
S1P C17 C17 C 0 1 N N N N N N -2.258 23.951 28.796 12.416 -1.932 -0.279 C17 S1P 20
S1P C18 C18 C 0 1 N N N N N N -2.816 24.962 29.780 13.803 -1.634 0.294 C18 S1P 21
S1P P22 P22 P 0 1 N N N N N N 3.627 14.289 39.455 -8.098 -1.677 -0.041 P22 S1P 22
S1P O23 O23 O 0 1 N N N N N N 3.053 14.337 40.809 -8.123 -1.972 -1.624 O23 S1P 23
S1P O24 O24 O 0 1 N N N N N N 4.897 15.019 39.186 -8.320 -3.052 0.765 O24 S1P 24
S1P O25 O25 O 0 1 N N N N N N 3.775 12.880 38.888 -9.179 -0.725 0.300 O25 S1P 25
S1P H1 H1 H 0 1 N N N N N N 0.640 15.663 38.874 -6.181 0.226 -1.191 H1 S1P 26
S1P H1A H1A H 0 1 N N N N N N 0.993 13.957 39.290 -6.932 1.004 0.222 H1A S1P 27
S1P H2 H2 H 0 1 N N N N N N -0.391 14.113 37.244 -4.165 -0.282 0.219 H2 S1P 28
S1P HN2 HN2 H 0 1 N N N N N N 1.058 12.823 35.855 -4.022 0.797 2.339 HN2 S1P 29
S1P HN2A HN2A H 0 0 N N N N N N 2.370 13.276 36.715 -5.560 1.413 2.188 HN2A S1P 30
S1P H3 H3 H 0 1 N N N N N N 1.980 15.747 36.207 -4.996 2.654 0.123 H3 S1P 31
S1P HO3 HO3 H 0 1 N N N N N N 0.176 17.221 35.825 -3.639 1.004 -1.844 HO3 S1P 32
S1P H4 H4 H 0 1 N N N N N N -0.364 14.586 34.500 -2.806 2.182 1.506 H4 S1P 33
S1P H5 H5 H 0 1 N N N N N N 2.555 15.378 34.086 -2.081 2.280 -1.439 H5 S1P 34
S1P H6 H6 H 0 1 N N N N N N 1.866 13.611 32.211 -0.270 3.631 -0.089 H6 S1P 35
S1P H6A H6A H 0 1 N N N N N N 0.225 14.315 32.299 -0.601 2.544 1.280 H6A S1P 36
S1P H7 H7 H 0 1 N N N N N N 2.137 16.491 32.046 0.137 0.606 -0.079 H7 S1P 37
S1P H7A H7A H 0 1 N N N N N N 2.498 15.276 30.779 0.469 1.693 -1.449 H7A S1P 38
S1P H8 H8 H 0 1 N N N N N N 0.859 16.334 29.672 2.126 2.922 -0.073 H8 S1P 39
S1P H8A H8A H 0 1 N N N N N N -0.201 15.267 30.699 1.794 1.834 1.297 H8A S1P 40
S1P H9 H9 H 0 1 N N N N N N -1.059 17.031 31.843 2.533 -0.103 -0.062 H9 S1P 41
S1P H9A H9A H 0 1 N N N N N N 0.456 17.958 31.797 2.864 0.984 -1.432 H9A S1P 42
S1P H10 H10 H 0 1 N N N N N N -0.395 19.086 30.041 4.521 2.212 -0.056 H10 S1P 43
S1P H10A H10A H 0 0 N N N N N N -0.191 17.551 29.091 4.190 1.125 1.314 H10A S1P 44
S1P H11 H11 H 0 1 N N N N N N -2.552 16.951 29.769 4.928 -0.813 -0.046 H11 S1P 45
S1P H11A H11A H 0 0 N N N N N N -2.711 18.607 30.437 5.260 0.275 -1.416 H11A S1P 46
S1P H12 H12 H 0 1 N N N N N N -1.526 18.903 27.846 6.917 1.503 -0.039 H12 S1P 47
S1P H12A H12A H 0 0 N N N N N N -2.864 17.726 27.651 6.585 0.416 1.330 H12A S1P 48
S1P H13 H13 H 0 1 N N N N N N -4.469 19.204 28.493 7.324 -1.522 -0.029 H13 S1P 49
S1P H13A H13A H 0 0 N N N N N N -3.211 20.257 29.278 7.655 -0.435 -1.399 H13A S1P 50
S1P H14 H14 H 0 1 N N N N N N -3.116 20.114 26.312 9.312 0.794 -0.023 H14 S1P 51
S1P H14A H14A H 0 0 N N N N N N -4.585 20.900 27.017 8.981 -0.294 1.347 H14A S1P 52
S1P H15 H15 H 0 1 N N N N N N -1.680 21.640 27.552 9.720 -2.231 -0.012 H15 S1P 53
S1P H15A H15A H 0 0 N N N N N N -2.866 22.552 26.523 10.051 -1.144 -1.382 H15A S1P 54
S1P H16 H16 H 0 1 N N N N N N -4.197 23.080 28.495 11.708 0.084 -0.006 H16 S1P 55
S1P H16A H16A H 0 0 N N N N N N -3.090 22.114 29.533 11.377 -1.003 1.364 H16A S1P 56
S1P H17 H17 H 0 1 N N N N N N -1.280 23.609 29.165 12.115 -2.941 0.004 H17 S1P 57
S1P H17A H17A H 0 0 N N N N N N -2.150 24.441 27.817 12.447 -1.854 -1.365 H17A S1P 58
S1P H18 H18 H 0 1 N N N N N N -2.126 25.815 29.861 14.104 -0.625 0.011 H18 S1P 59
S1P H18A H18A H 0 0 N N N N N N -3.796 25.315 29.426 13.772 -1.712 1.380 H18A S1P 60
S1P H18B H18B H 0 0 N N N N N N -2.931 24.489 30.766 14.521 -2.352 -0.102 H18B S1P 61
S1P HO23 HO23 H 0 0 N N N N N N 2.868 13.454 41.106 -7.440 -2.589 -1.919 HO23 S1P 62
S1P HO24 HO24 H 0 0 N N N N N N 5.501 14.446 38.728 -9.159 -3.492 0.569 HO24 S1P 63
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
S1P C2 C1 SING N N 1
S1P O1 C1 SING N N 2
S1P C1 H1 SING N N 3
S1P C1 H1A SING N N 4
S1P O1 P22 SING N N 5
S1P C3 C2 SING N N 6
S1P N2 C2 SING N N 7
S1P C2 H2 SING N N 8
S1P N2 HN2 SING N N 9
S1P N2 HN2A SING N N 10
S1P C4 C3 SING N N 11
S1P C3 O3 SING N N 12
S1P C3 H3 SING N N 13
S1P O3 HO3 SING N N 14
S1P C5 C4 DOUB N N 15
S1P C4 H4 SING N E 16
S1P C6 C5 SING N N 17
S1P C5 H5 SING N N 18
S1P C7 C6 SING N N 19
S1P C6 H6 SING N N 20
S1P C6 H6A SING N N 21
S1P C8 C7 SING N N 22
S1P C7 H7 SING N N 23
S1P C7 H7A SING N N 24
S1P C8 C9 SING N N 25
S1P C8 H8 SING N N 26
S1P C8 H8A SING N N 27
S1P C10 C9 SING N N 28
S1P C9 H9 SING N N 29
S1P C9 H9A SING N N 30
S1P C11 C10 SING N N 31
S1P C10 H10 SING N N 32
S1P C10 H10A SING N N 33
S1P C12 C11 SING N N 34
S1P C11 H11 SING N N 35
S1P C11 H11A SING N N 36
S1P C12 C13 SING N N 37
S1P C12 H12 SING N N 38
S1P C12 H12A SING N N 39
S1P C14 C13 SING N N 40
S1P C13 H13 SING N N 41
S1P C13 H13A SING N N 42
S1P C14 C15 SING N N 43
S1P C14 H14 SING N N 44
S1P C14 H14A SING N N 45
S1P C15 C16 SING N N 46
S1P C15 H15 SING N N 47
S1P C15 H15A SING N N 48
S1P C16 C17 SING N N 49
S1P C16 H16 SING N N 50
S1P C16 H16A SING N N 51
S1P C17 C18 SING N N 52
S1P C17 H17 SING N N 53
S1P C17 H17A SING N N 54
S1P C18 H18 SING N N 55
S1P C18 H18A SING N N 56
S1P C18 H18B SING N N 57
S1P O25 P22 DOUB N N 58
S1P O24 P22 SING N N 59
S1P P22 O23 SING N N 60
S1P O23 HO23 SING N N 61
S1P O24 HO24 SING N N 62
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
S1P SMILES ACDLabs 11.02 O=P(OCC(N)C(O)/C=C/CCCCCCCCCCCCC)(O)O
S1P SMILES_CANONICAL CACTVS 3.352 CCCCCCCCCCCCC\C=C\[C@@H](O)[C@@H](N)CO[P](O)(O)=O
S1P SMILES CACTVS 3.352 CCCCCCCCCCCCCC=C[CH](O)[CH](N)CO[P](O)(O)=O
S1P SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 CCCCCCCCCCCCC/C=C/[C@H]([C@H](COP(=O)(O)O)N)O
S1P SMILES "OpenEye OEToolkits" 1.7.0 CCCCCCCCCCCCCC=CC(C(COP(=O)(O)O)N)O
S1P InChI InChI 1.03 InChI=1S/C18H38NO5P/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-18(20)17(19)16-24-25(21,22)23/h14-15,17-18,20H,2-13,16,19H2,1H3,(H2,21,22,23)/b15-14+/t17-,18+/m0/s1
S1P InChIKey InChI 1.03 DUYSYHSSBDVJSM-KRWOKUGFSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
S1P "SYSTEMATIC NAME" ACDLabs 11.02 "(2S,3R,4E)-2-amino-3-hydroxyoctadec-4-en-1-yl dihydrogen phosphate"
S1P "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "[(E,2S,3R)-2-azanyl-3-hydroxy-octadec-4-enyl] dihydrogen phosphate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
S1P 'Create component' 2009-07-14 RCSB
S1P 'Modify descriptor' 2011-06-04 RCSB
S1P 'Modify synonyms' 2020-06-05 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id S1P
_pdbx_chem_comp_synonyms.name "sphingosine 1-phosphate"
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_synonyms.comp_id S1P
_pdbe_chem_comp_synonyms.name 'sphingosine 1-phosphate'
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
S1P C1 C 7.702 -0.375 1
S1P O1 O 6.404 0.375 2
S1P C2 C 9.002 0.375 3
S1P N2 N 9.002 1.875 4
S1P C3 C 10.301 -0.375 5
S1P O3 O 10.301 -1.875 6
S1P C4 C 11.600 0.375 7
S1P C5 C 12.899 -0.375 8
S1P C6 C 14.198 0.375 9
S1P C7 C 15.497 -0.375 10
S1P C8 C 16.796 0.375 11
S1P C9 C 18.095 -0.375 12
S1P C10 C 19.394 0.375 13
S1P C11 C 20.693 -0.375 14
S1P C12 C 21.992 0.375 15
S1P C13 C 23.291 -0.375 16
S1P C14 C 24.590 0.375 17
S1P C15 C 25.889 -0.375 18
S1P C16 C 27.188 0.375 19
S1P C17 C 28.487 -0.375 20
S1P C18 C 29.786 0.375 21
S1P P22 P 5.104 -0.375 22
S1P O23 O 5.854 -1.674 23
S1P O24 O 4.354 0.924 24
S1P O25 O 3.805 -1.125 25
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
S1P C2 C1 SINGLE NONE 1
S1P O1 C1 SINGLE NONE 2
S1P O1 P22 SINGLE NONE 3
S1P C3 C2 SINGLE NONE 4
S1P C2 N2 SINGLE BEGINDASH 5
S1P C4 C3 SINGLE ENDUPRIGHT 6
S1P C3 O3 SINGLE BEGINWEDGE 7
S1P C5 C4 DOUBLE NONE 8
S1P C6 C5 SINGLE ENDUPRIGHT 9
S1P C7 C6 SINGLE NONE 10
S1P C8 C7 SINGLE NONE 11
S1P C8 C9 SINGLE NONE 12
S1P C10 C9 SINGLE NONE 13
S1P C11 C10 SINGLE NONE 14
S1P C12 C11 SINGLE NONE 15
S1P C12 C13 SINGLE NONE 16
S1P C14 C13 SINGLE NONE 17
S1P C14 C15 SINGLE NONE 18
S1P C15 C16 SINGLE NONE 19
S1P C16 C17 SINGLE NONE 20
S1P C17 C18 SINGLE NONE 21
S1P O25 P22 DOUBLE NONE 22
S1P O24 P22 SINGLE NONE 23
S1P P22 O23 SINGLE NONE 24
#
_pdbe_chem_comp_substructure.comp_id S1P
_pdbe_chem_comp_substructure.substructure_name phosphate
_pdbe_chem_comp_substructure.id F1
_pdbe_chem_comp_substructure.substructure_type fragment
_pdbe_chem_comp_substructure.substructure_smiles O=P(O)(O)O
_pdbe_chem_comp_substructure.substructure_inchis InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4)
_pdbe_chem_comp_substructure.substructure_inchikeys NBIIXXVUZAFLBC-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
S1P O1 F1 1
S1P P22 F1 1
S1P O25 F1 1
S1P O24 F1 1
S1P O23 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id S1P
_pdbe_chem_comp_rdkit_properties.exactmw 379.249
_pdbe_chem_comp_rdkit_properties.amw 379.478
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 6
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 5
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 22
_pdbe_chem_comp_rdkit_properties.NumHBD 4
_pdbe_chem_comp_rdkit_properties.NumHBA 6
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 25
_pdbe_chem_comp_rdkit_properties.NumAtoms 63
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 7
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.889
_pdbe_chem_comp_rdkit_properties.NumRings 0
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 2
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 206.404
_pdbe_chem_comp_rdkit_properties.tpsa 113.010
_pdbe_chem_comp_rdkit_properties.CrippenClogP 4.041
_pdbe_chem_comp_rdkit_properties.CrippenMR 102.196
_pdbe_chem_comp_rdkit_properties.chi0v 12.830
_pdbe_chem_comp_rdkit_properties.chi1v 7.073
_pdbe_chem_comp_rdkit_properties.chi2v 1.710
_pdbe_chem_comp_rdkit_properties.chi3v 1.710
_pdbe_chem_comp_rdkit_properties.chi4v 0.835
_pdbe_chem_comp_rdkit_properties.chi0n 49.936
_pdbe_chem_comp_rdkit_properties.chi1n 24.231
_pdbe_chem_comp_rdkit_properties.chi2n 1.395
_pdbe_chem_comp_rdkit_properties.chi3n 1.395
_pdbe_chem_comp_rdkit_properties.chi4n 0.636
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.230
_pdbe_chem_comp_rdkit_properties.kappa1 3.668
_pdbe_chem_comp_rdkit_properties.kappa2 15.981
_pdbe_chem_comp_rdkit_properties.kappa3 18.361
_pdbe_chem_comp_rdkit_properties.Phi 2.345
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
S1P UniChem ChEMBL CHEMBL225155
S1P UniChem PDBe S1P
S1P UniChem 'Guide to Pharmacology' 911
S1P UniChem 'PubChem DOTF' 99431555
S1P UniChem 'KEGG LIGAND' C06124
S1P UniChem ChEBI 37550
S1P UniChem ZINC ZINC000008860500
S1P UniChem eMolecules 715668
S1P UniChem fdasrs YVE187NJ1U
S1P UniChem SureChEMBL SCHEMBL3886
S1P UniChem HMDB HMDB0000277
S1P UniChem NMRShiftDB 60021127
S1P UniChem ACTor 26993-30-6
S1P UniChem BindingDb 50158348
S1P UniChem LipidMaps LMSP01050001
S1P UniChem MetaboLights MTBLC37550
S1P UniChem BRENDA 166851
S1P UniChem BRENDA 167981
S1P UniChem BRENDA 207024
S1P UniChem BRENDA 208511
S1P UniChem BRENDA 208512
S1P UniChem BRENDA 233221
S1P UniChem BRENDA 3105
S1P UniChem BRENDA 9801
S1P UniChem MedChemExpress HY-108496
S1P UniChem 'Probes And Drugs' PD020885
S1P UniChem 'EPA CompTox Dashboard' DTXSID4037166
S1P UniChem 'PubChem TPHARMA' 14853517
S1P UniChem 'PubChem TPHARMA' 14902393
S1P UniChem 'PubChem TPHARMA' 15929606
S1P UniChem PubChem 10883396
S1P UniChem PubChem 5283560
S1P UniChem Nikkaji J1.505.321F
S1P UniChem Nikkaji J627.163D
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
S1P C1 8.032 -0.520 -0.311 ETKDGv3 1
S1P O1 8.861 0.430 0.317 ETKDGv3 2
S1P C2 6.578 -0.296 0.131 ETKDGv3 3
S1P N2 6.500 -0.392 1.594 ETKDGv3 4
S1P C3 5.622 -1.307 -0.557 ETKDGv3 5
S1P O3 5.703 -1.167 -1.953 ETKDGv3 6
S1P C4 4.189 -1.118 -0.113 ETKDGv3 7
S1P C5 3.487 -0.015 -0.419 ETKDGv3 8
S1P C6 2.067 0.166 0.039 ETKDGv3 9
S1P C7 1.113 -0.753 -0.739 ETKDGv3 10
S1P C8 -0.335 -0.669 -0.231 ETKDGv3 11
S1P C9 -1.016 0.657 -0.598 ETKDGv3 12
S1P C10 -2.495 0.646 -0.191 ETKDGv3 13
S1P C11 -3.177 1.972 -0.559 ETKDGv3 14
S1P C12 -4.624 2.053 -0.049 ETKDGv3 15
S1P C13 -5.569 1.098 -0.799 ETKDGv3 16
S1P C14 -7.052 1.353 -0.476 ETKDGv3 17
S1P C15 -7.436 1.160 1.005 ETKDGv3 18
S1P C16 -7.104 -0.227 1.593 ETKDGv3 19
S1P C17 -7.736 -1.413 0.845 ETKDGv3 20
S1P C18 -9.264 -1.387 0.872 ETKDGv3 21
S1P P22 10.459 0.211 -0.238 ETKDGv3 22
S1P O23 11.478 1.258 0.615 ETKDGv3 23
S1P O24 10.970 -1.383 0.027 ETKDGv3 24
S1P O25 10.545 0.541 -1.712 ETKDGv3 25
S1P H1 8.334 -1.553 -0.024 ETKDGv3 26
S1P H1A 8.088 -0.412 -1.419 ETKDGv3 27
S1P H2 6.291 0.737 -0.172 ETKDGv3 28
S1P HN2 6.574 -1.394 1.885 ETKDGv3 29
S1P HN2A 5.573 -0.032 1.915 ETKDGv3 30
S1P H3 5.941 -2.337 -0.271 ETKDGv3 31
S1P HO3 5.304 -1.987 -2.348 ETKDGv3 32
S1P H4 3.720 -1.912 0.462 ETKDGv3 33
S1P H5 3.955 0.785 -0.986 ETKDGv3 34
S1P H6 2.000 -0.039 1.130 ETKDGv3 35
S1P H6A 1.784 1.226 -0.131 ETKDGv3 36
S1P H7 1.452 -1.806 -0.626 ETKDGv3 37
S1P H7A 1.148 -0.504 -1.823 ETKDGv3 38
S1P H8 -0.356 -0.814 0.872 ETKDGv3 39
S1P H8A -0.907 -1.505 -0.690 ETKDGv3 40
S1P H9 -0.507 1.496 -0.077 ETKDGv3 41
S1P H9A -0.940 0.822 -1.696 ETKDGv3 42
S1P H10 -2.571 0.481 0.906 ETKDGv3 43
S1P H10A -3.004 -0.192 -0.712 ETKDGv3 44
S1P H11 -3.157 2.116 -1.661 ETKDGv3 45
S1P H11A -2.606 2.810 -0.100 ETKDGv3 46
S1P H12 -4.981 3.097 -0.188 ETKDGv3 47
S1P H12A -4.641 1.832 1.040 ETKDGv3 48
S1P H13 -5.313 0.043 -0.573 ETKDGv3 49
S1P H13A -5.433 1.241 -1.893 ETKDGv3 50
S1P H14 -7.677 0.689 -1.109 ETKDGv3 51
S1P H14A -7.308 2.394 -0.770 ETKDGv3 52
S1P H15 -8.524 1.353 1.117 ETKDGv3 53
S1P H15A -6.927 1.934 1.619 ETKDGv3 54
S1P H16 -7.445 -0.249 2.651 ETKDGv3 55
S1P H16A -6.002 -0.364 1.619 ETKDGv3 56
S1P H17 -7.380 -1.451 -0.205 ETKDGv3 57
S1P H17A -7.397 -2.351 1.336 ETKDGv3 58
S1P H18 -9.652 -0.544 0.262 ETKDGv3 59
S1P H18A -9.633 -1.292 1.915 ETKDGv3 60
S1P H18B -9.657 -2.332 0.442 ETKDGv3 61
S1P HO23 11.366 1.000 1.564 ETKDGv3 62
S1P HO24 10.690 -1.883 -0.781 ETKDGv3 63
#