data_S24
#
_chem_comp.id S24
_chem_comp.name "S-(2,4-dihydroxyphenyl) hydrogen thiocarbonate"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C7 H6 O4 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2007-12-20
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 186.185
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code S24
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 2OSF
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
S24 C2 C2 C 0 1 Y N N N N N -8.461 11.310 7.722 -0.834 1.472 -0.344 C2 S24 1
S24 C4 C4 C 0 1 Y N N N N N -10.356 12.662 8.370 -2.726 0.107 0.218 C4 S24 2
S24 C5 C5 C 0 1 Y N N N N N -11.228 11.666 8.098 -1.962 -1.036 0.031 C5 S24 3
S24 C6 C6 C 0 1 Y N N N N N -10.740 10.473 7.649 -0.631 -0.926 -0.333 C6 S24 4
S24 C7 C7 C 0 1 N N N N N N -8.856 7.758 8.121 2.407 0.127 0.537 C7 S24 5
S24 O2 O2 O 0 1 N N N N N N -8.002 7.411 8.890 3.749 0.028 0.603 O2 S24 6
S24 O4 O4 O 0 1 N N N N N N -11.624 9.516 7.343 0.119 -2.045 -0.517 O4 S24 7
S24 O1 O1 O 0 1 N N N N N N -9.814 7.166 8.184 1.736 -0.024 1.539 O1 S24 8
S24 S1 S1 S 0 1 N N N N N N -8.738 8.901 6.851 1.625 0.476 -1.003 S1 S24 9
S24 C1 C1 C 0 1 Y N N N N N -9.384 10.314 7.436 -0.065 0.333 -0.527 C1 S24 10
S24 O3 O3 O 0 1 N N N N N N -10.808 13.801 8.911 -4.031 0.000 0.585 O3 S24 11
S24 C3 C3 C 0 1 Y N N N N N -8.997 12.475 8.210 -2.160 1.360 0.030 C3 S24 12
S24 H2 H2 H 0 1 N N N N N N -7.400 11.178 7.572 -0.396 2.448 -0.489 H2 S24 13
S24 H5 H5 H 0 1 N N N N N N -12.290 11.811 8.233 -2.404 -2.010 0.178 H5 S24 14
S24 HO2 HO2 H 0 1 N N N N N N -8.321 6.684 9.411 4.133 -0.164 1.469 HO2 S24 15
S24 HO4 HO4 H 0 1 N N N N N N -11.833 9.562 6.418 0.104 -2.385 -1.422 HO4 S24 16
S24 HO3 HO3 H 0 1 N N N N N N -10.915 13.686 9.848 -4.170 -0.011 1.542 HO3 S24 17
S24 H3 H3 H 0 1 N N N N N N -8.328 13.279 8.480 -2.757 2.248 0.176 H3 S24 18
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
S24 C1 C2 DOUB Y N 1
S24 C2 C3 SING Y N 2
S24 C2 H2 SING N N 3
S24 C5 C4 SING Y N 4
S24 C3 C4 DOUB Y N 5
S24 C4 O3 SING N N 6
S24 C6 C5 DOUB Y N 7
S24 C5 H5 SING N N 8
S24 O4 C6 SING N N 9
S24 C1 C6 SING Y N 10
S24 S1 C7 SING N N 11
S24 C7 O1 DOUB N N 12
S24 C7 O2 SING N N 13
S24 O2 HO2 SING N N 14
S24 O4 HO4 SING N N 15
S24 S1 C1 SING N N 16
S24 O3 HO3 SING N N 17
S24 C3 H3 SING N N 18
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
S24 SMILES ACDLabs 10.04 O=C(Sc1ccc(O)cc1O)O
S24 SMILES_CANONICAL CACTVS 3.341 OC(=O)Sc1ccc(O)cc1O
S24 SMILES CACTVS 3.341 OC(=O)Sc1ccc(O)cc1O
S24 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 c1cc(c(cc1O)O)SC(=O)O
S24 SMILES "OpenEye OEToolkits" 1.5.0 c1cc(c(cc1O)O)SC(=O)O
S24 InChI InChI 1.03 InChI=1S/C7H6O4S/c8-4-1-2-6(5(9)3-4)12-7(10)11/h1-3,8-9H,(H,10,11)
S24 InChIKey InChI 1.03 MFTAINZKTCOZPX-UHFFFAOYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
S24 "SYSTEMATIC NAME" ACDLabs 10.04 "S-(2,4-dihydroxyphenyl) hydrogen thiocarbonate"
S24 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2,4-dihydroxyphenyl)sulfanylmethanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
S24 'Create component' 2007-12-20 RCSB
S24 'Modify aromatic_flag' 2011-06-04 RCSB
S24 'Modify descriptor' 2011-06-04 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
S24 C2 C 7.702 -0.375 1
S24 C4 C 6.404 -2.625 2
S24 C5 C 5.104 -1.875 3
S24 C6 C 5.104 -0.375 4
S24 C7 C 7.702 2.625 5
S24 O2 O 9.002 1.875 6
S24 O4 O 3.805 0.375 7
S24 O1 O 7.702 4.125 8
S24 S1 S 6.404 1.875 9
S24 C1 C 6.404 0.375 10
S24 O3 O 6.404 -4.125 11
S24 C3 C 7.702 -1.875 12
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
S24 C1 C2 DOUBLE NONE 1
S24 C2 C3 SINGLE NONE 2
S24 C5 C4 SINGLE NONE 3
S24 C3 C4 DOUBLE NONE 4
S24 C4 O3 SINGLE NONE 5
S24 C6 C5 DOUBLE NONE 6
S24 O4 C6 SINGLE NONE 7
S24 C1 C6 SINGLE NONE 8
S24 S1 C7 SINGLE NONE 9
S24 C7 O1 DOUBLE NONE 10
S24 C7 O2 SINGLE NONE 11
S24 S1 C1 SINGLE NONE 12
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
S24 MurckoScaffold S1 scaffold c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
S24 phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
S24 C2 S1 1
S24 C4 S1 1
S24 C5 S1 1
S24 C6 S1 1
S24 C1 S1 1
S24 C3 S1 1
S24 C2 F1 1
S24 C1 F1 1
S24 C6 F1 1
S24 C5 F1 1
S24 C4 F1 1
S24 C3 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id S24
_pdbe_chem_comp_rdkit_properties.exactmw 185.999
_pdbe_chem_comp_rdkit_properties.amw 186.188
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 3
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 5
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 12
_pdbe_chem_comp_rdkit_properties.NumAtoms 18
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 5
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 81.154
_pdbe_chem_comp_rdkit_properties.tpsa 77.760
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.835
_pdbe_chem_comp_rdkit_properties.CrippenMR 43.003
_pdbe_chem_comp_rdkit_properties.chi0v 6.358
_pdbe_chem_comp_rdkit_properties.chi1v 3.541
_pdbe_chem_comp_rdkit_properties.chi2v 1.566
_pdbe_chem_comp_rdkit_properties.chi3v 1.566
_pdbe_chem_comp_rdkit_properties.chi4v 0.929
_pdbe_chem_comp_rdkit_properties.chi0n 11.541
_pdbe_chem_comp_rdkit_properties.chi1n 5.449
_pdbe_chem_comp_rdkit_properties.chi2n 0.908
_pdbe_chem_comp_rdkit_properties.chi3n 0.908
_pdbe_chem_comp_rdkit_properties.chi4n 0.517
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.360
_pdbe_chem_comp_rdkit_properties.kappa1 3.571
_pdbe_chem_comp_rdkit_properties.kappa2 3.358
_pdbe_chem_comp_rdkit_properties.kappa3 2.062
_pdbe_chem_comp_rdkit_properties.Phi 0.999
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
S24 UniChem PDBe S24
S24 UniChem ZINC ZINC000058650549
S24 UniChem PubChem 24798725
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
S24 C2 -0.376 -0.127 1.350 ETKDGv3 1
S24 C4 -2.154 0.587 -0.163 ETKDGv3 2
S24 C5 -1.361 0.031 -1.283 ETKDGv3 3
S24 C6 -0.174 -0.548 -1.055 ETKDGv3 4
S24 C7 2.826 0.141 0.494 ETKDGv3 5
S24 O2 3.011 0.980 1.587 ETKDGv3 6
S24 O4 0.544 -1.064 -2.133 ETKDGv3 7
S24 O1 3.287 0.458 -0.634 ETKDGv3 8
S24 S1 1.934 -1.396 0.694 ETKDGv3 9
S24 C1 0.350 -0.628 0.339 ETKDGv3 10
S24 O3 -3.386 1.190 -0.402 ETKDGv3 11
S24 C3 -1.683 0.509 1.088 ETKDGv3 12
S24 H2 -0.010 -0.181 2.368 ETKDGv3 13
S24 H5 -1.747 0.093 -2.294 ETKDGv3 14
S24 HO2 3.514 1.854 1.491 ETKDGv3 15
S24 HO4 1.443 -1.514 -2.020 ETKDGv3 16
S24 HO3 -3.763 1.260 -1.339 ETKDGv3 17
S24 H3 -2.256 0.912 1.913 ETKDGv3 18
#