data_S3W
#
_chem_comp.id S3W
_chem_comp.name
"N-[(2R,3R,4S,5R,6S)-3,4,5-trihydroxy-6-(hydroxymethyl)tetrahydro-2H-pyran-2-yl]-N'-[(1-{[(2R,3S,4S,5R,6S)-3,4,5-trihydroxy-6-methoxytetrahydro-2H-pyran-2-yl]methyl}-1H-1,2,3-triazol-4-yl)methyl]butanediamide"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C20 H33 N5 O12"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2019-12-18
_chem_comp.pdbx_modified_date 2020-10-23
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 535.502
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code S3W
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6VAW
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
S3W N5 N1 N 0 1 Y N N N N N 63.214 31.974 3.380 3.323 1.361 0.354 N5 S3W 1
S3W N4 N2 N 0 1 Y N N N N N 63.588 33.060 2.747 4.372 0.712 0.723 N4 S3W 2
S3W N3 N3 N 0 1 Y N N N N N 64.906 32.939 2.507 4.470 -0.387 0.061 N3 S3W 3
S3W N1 N4 N 0 1 N N N N N N 64.198 27.342 9.775 -5.895 0.644 -0.486 N1 S3W 4
S3W N2 N5 N 0 1 N N N N N N 65.094 29.696 5.214 0.269 0.629 -0.514 N2 S3W 5
S3W C17 C1 C 0 1 N N S N N N 66.253 36.259 2.580 7.996 -1.772 0.040 C17 S3W 6
S3W C16 C2 C 0 1 N N S N N N 67.278 37.042 3.391 9.359 -1.085 -0.093 C16 S3W 7
S3W C18 C3 C 0 1 N N R N N N 66.537 34.763 2.673 6.893 -0.711 0.013 C18 S3W 8
S3W C14 C4 C 0 1 N N S N N N 68.855 35.131 3.064 8.351 0.937 0.968 C14 S3W 9
S3W C15 C5 C 0 1 N N R N N N 68.696 36.645 3.002 9.512 -0.058 1.033 C15 S3W 10
S3W C20 C6 C 0 1 N N N N N N 69.160 33.406 4.632 7.498 2.751 -0.346 C20 S3W 11
S3W C11 C7 C 0 1 N N N N N N 64.157 29.787 4.113 1.425 1.049 -1.310 C11 S3W 12
S3W C12 C8 C 0 1 Y N N N N N 64.288 31.155 3.528 2.694 0.662 -0.597 C12 S3W 13
S3W C13 C9 C 0 1 Y N N N N N 65.369 31.782 2.988 3.423 -0.462 -0.793 C13 S3W 14
S3W C19 C10 C 0 1 N N N N N N 65.636 33.958 1.757 5.533 -1.384 0.205 C19 S3W 15
S3W C4 C11 C 0 1 N N R N N N 62.123 23.718 10.498 -9.808 -0.616 0.443 C4 S3W 16
S3W C3 C12 C 0 1 N N S N N N 62.971 24.295 11.627 -9.401 0.773 0.945 C3 S3W 17
S3W C5 C13 C 0 1 N N S N N N 62.761 24.059 9.151 -8.619 -1.570 0.584 C5 S3W 18
S3W C1 C14 C 0 1 N N R N N N 63.923 25.961 10.034 -7.050 0.224 0.310 C1 S3W 19
S3W C2 C15 C 0 1 N N R N N N 63.250 25.776 11.391 -8.176 1.250 0.158 C2 S3W 20
S3W C6 C16 C 0 1 N N N N N N 62.199 23.499 7.866 -8.998 -2.944 0.030 C6 S3W 21
S3W C7 C17 C 0 1 N N N N N N 65.210 27.762 9.007 -4.646 0.401 -0.042 C7 S3W 22
S3W C8 C18 C 0 1 N N N N N N 65.367 29.263 8.893 -3.457 0.833 -0.862 C8 S3W 23
S3W C9 C19 C 0 1 N N N N N N 65.823 29.717 7.510 -2.168 0.440 -0.138 C9 S3W 24
S3W C10 C20 C 0 1 N N N N N N 64.707 29.720 6.490 -0.980 0.872 -0.957 C10 S3W 25
S3W O18 O1 O 0 1 N N N N N N 67.884 34.501 2.251 7.113 0.229 1.066 O18 S3W 26
S3W O14 O2 O 0 1 N N N N N N 68.724 34.737 4.398 8.398 1.644 -0.273 O14 S3W 27
S3W O15 O3 O 0 1 N N N N N N 69.633 37.266 3.874 10.749 0.641 0.877 O15 S3W 28
S3W O16 O4 O 0 1 N N N N N N 67.094 38.438 3.185 10.398 -2.061 0.003 O16 S3W 29
S3W O17 O5 O 0 1 N N N N N N 64.944 36.515 3.078 7.812 -2.681 -1.047 O17 S3W 30
S3W O5 O6 O 0 1 N N N N N N 63.060 25.461 8.997 -7.505 -1.052 -0.146 O5 S3W 31
S3W O2 O7 O 0 1 N N N N N N 64.098 26.283 12.412 -7.744 2.513 0.667 O2 S3W 32
S3W O3 O8 O 0 1 N N N N N N 62.350 24.098 12.889 -10.481 1.687 0.749 O3 S3W 33
S3W O4 O9 O 0 1 N N N N N N 60.787 24.210 10.584 -10.193 -0.533 -0.931 O4 S3W 34
S3W O6 O10 O 0 1 N N N N N N 63.226 23.319 6.897 -7.931 -3.865 0.267 O6 S3W 35
S3W O10 O11 O 0 1 N N N N N N 63.528 29.769 6.831 -1.147 1.440 -2.016 O10 S3W 36
S3W O7 O12 O 0 1 N N N N N N 65.987 26.988 8.455 -4.478 -0.167 1.016 O7 S3W 37
S3W HN1 H1 H 0 1 N N N N N N 63.602 28.029 10.190 -6.029 1.098 -1.333 HN1 S3W 38
S3W HN2 H2 H 0 1 N N N N N N 66.069 29.612 5.009 0.403 0.175 0.333 HN2 S3W 39
S3W HC17 H3 H 0 0 N N N N N N 66.325 36.568 1.527 7.953 -2.318 0.983 HC17 S3W 40
S3W HC16 H4 H 0 0 N N N N N N 67.132 36.803 4.455 9.420 -0.580 -1.057 HC16 S3W 41
S3W HC18 H5 H 0 0 N N N N N N 66.389 34.431 3.711 6.911 -0.193 -0.946 HC18 S3W 42
S3W HC14 H6 H 0 0 N N N N N N 69.861 34.878 2.698 8.432 1.645 1.793 HC14 S3W 43
S3W HC15 H7 H 0 0 N N N N N N 68.877 36.972 1.967 9.501 -0.569 1.996 HC15 S3W 44
S3W H20B H8 H 0 0 N N N N N N 69.031 33.159 5.696 7.737 3.467 0.441 H20B S3W 45
S3W H20C H9 H 0 0 N N N N N N 68.565 32.712 4.020 7.595 3.235 -1.318 H20C S3W 46
S3W H20A H10 H 0 0 N N N N N N 70.222 33.315 4.361 6.475 2.397 -0.216 H20A S3W 47
S3W H11A H11 H 0 0 N N N N N N 63.131 29.631 4.478 1.391 0.561 -2.284 H11A S3W 48
S3W H11B H12 H 0 0 N N N N N N 64.395 29.028 3.353 1.399 2.131 -1.445 H11B S3W 49
S3W HC13 H13 H 0 0 N N N N N N 66.386 31.420 2.955 3.211 -1.259 -1.491 HC13 S3W 50
S3W H19A H14 H 0 0 N N N N N N 66.250 33.468 0.988 5.484 -1.826 1.201 H19A S3W 51
S3W H19B H15 H 0 0 N N N N N N 64.916 34.635 1.275 5.404 -2.164 -0.545 H19B S3W 52
S3W HC4 H16 H 0 1 N N N N N N 62.115 22.623 10.603 -10.645 -0.986 1.034 HC4 S3W 53
S3W HC3 H17 H 0 1 N N N N N N 63.937 23.769 11.619 -9.156 0.720 2.006 HC3 S3W 54
S3W HC5 H18 H 0 1 N N N N N N 63.751 23.585 9.219 -8.351 -1.664 1.637 HC5 S3W 55
S3W HC1 H19 H 0 1 N N N N N N 64.864 25.392 10.034 -6.762 0.153 1.359 HC1 S3W 56
S3W HC2 H20 H 0 1 N N N N N N 62.294 26.319 11.388 -8.437 1.350 -0.896 HC2 S3W 57
S3W HC6B H21 H 0 0 N N N N N N 61.447 24.196 7.468 -9.902 -3.299 0.525 HC6B S3W 58
S3W HC6A H22 H 0 0 N N N N N N 61.726 22.528 8.073 -9.179 -2.866 -1.042 HC6A S3W 59
S3W HC8B H23 H 0 0 N N N N N N 66.111 29.594 9.632 -3.490 0.345 -1.836 HC8B S3W 60
S3W HC8A H24 H 0 0 N N N N N N 64.397 29.733 9.113 -3.483 1.915 -0.996 HC8A S3W 61
S3W HC9B H25 H 0 0 N N N N N N 66.614 29.037 7.161 -2.135 0.928 0.836 HC9B S3W 62
S3W HC9A H26 H 0 0 N N N N N N 66.226 30.737 7.591 -2.142 -0.642 -0.003 HC9A S3W 63
S3W HO15 H27 H 0 0 N N N N N N 69.529 38.209 3.831 10.910 1.311 1.555 HO15 S3W 64
S3W HO16 H28 H 0 0 N N N N N N 67.736 38.921 3.693 11.290 -1.695 -0.073 HO16 S3W 65
S3W HO17 H29 H 0 0 N N N N N N 64.760 37.445 3.023 8.477 -3.381 -1.092 HO17 S3W 66
S3W HO2 H30 H 0 1 N N N N N N 63.680 26.168 13.257 -6.967 2.873 0.217 HO2 S3W 67
S3W HO3 H31 H 0 1 N N N N N N 62.898 24.466 13.573 -10.292 2.588 1.045 HO3 S3W 68
S3W HO4 H32 H 0 1 N N N N N N 60.419 23.983 11.430 -10.939 0.059 -1.095 HO4 S3W 69
S3W HO6 H33 H 0 1 N N N N N N 62.851 22.967 6.099 -8.103 -4.759 -0.059 HO6 S3W 70
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
S3W C19 N3 SING N N 1
S3W C19 C18 SING N N 2
S3W O18 C18 SING N N 3
S3W O18 C14 SING N N 4
S3W N3 N4 SING Y N 5
S3W N3 C13 SING Y N 6
S3W C17 C18 SING N N 7
S3W C17 O17 SING N N 8
S3W C17 C16 SING N N 9
S3W N4 N5 DOUB Y N 10
S3W C13 C12 DOUB Y N 11
S3W C15 C14 SING N N 12
S3W C15 C16 SING N N 13
S3W C15 O15 SING N N 14
S3W C14 O14 SING N N 15
S3W O16 C16 SING N N 16
S3W N5 C12 SING Y N 17
S3W C12 C11 SING N N 18
S3W C11 N2 SING N N 19
S3W O14 C20 SING N N 20
S3W N2 C10 SING N N 21
S3W C10 O10 DOUB N N 22
S3W C10 C9 SING N N 23
S3W O6 C6 SING N N 24
S3W C9 C8 SING N N 25
S3W C6 C5 SING N N 26
S3W O7 C7 DOUB N N 27
S3W C8 C7 SING N N 28
S3W O5 C5 SING N N 29
S3W O5 C1 SING N N 30
S3W C7 N1 SING N N 31
S3W C5 C4 SING N N 32
S3W N1 C1 SING N N 33
S3W C1 C2 SING N N 34
S3W C4 O4 SING N N 35
S3W C4 C3 SING N N 36
S3W C2 C3 SING N N 37
S3W C2 O2 SING N N 38
S3W C3 O3 SING N N 39
S3W N1 HN1 SING N N 40
S3W N2 HN2 SING N N 41
S3W C17 HC17 SING N N 42
S3W C16 HC16 SING N N 43
S3W C18 HC18 SING N N 44
S3W C14 HC14 SING N N 45
S3W C15 HC15 SING N N 46
S3W C20 H20B SING N N 47
S3W C20 H20C SING N N 48
S3W C20 H20A SING N N 49
S3W C11 H11A SING N N 50
S3W C11 H11B SING N N 51
S3W C13 HC13 SING N N 52
S3W C19 H19A SING N N 53
S3W C19 H19B SING N N 54
S3W C4 HC4 SING N N 55
S3W C3 HC3 SING N N 56
S3W C5 HC5 SING N N 57
S3W C1 HC1 SING N N 58
S3W C2 HC2 SING N N 59
S3W C6 HC6B SING N N 60
S3W C6 HC6A SING N N 61
S3W C8 HC8B SING N N 62
S3W C8 HC8A SING N N 63
S3W C9 HC9B SING N N 64
S3W C9 HC9A SING N N 65
S3W O15 HO15 SING N N 66
S3W O16 HO16 SING N N 67
S3W O17 HO17 SING N N 68
S3W O2 HO2 SING N N 69
S3W O3 HO3 SING N N 70
S3W O4 HO4 SING N N 71
S3W O6 HO6 SING N N 72
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
S3W SMILES ACDLabs 12.01 n2c(CNC(CCC(NC1C(C(C(O)C(CO)O1)O)O)=O)=O)cn(n2)CC3C(O)C(C(C(OC)O3)O)O
S3W InChI InChI 1.03 InChI=1S/C20H33N5O12/c1-35-20-18(34)16(32)13(29)9(37-20)6-25-5-8(23-24-25)4-21-11(27)2-3-12(28)22-19-17(33)15(31)14(30)10(7-26)36-19/h5,9-10,13-20,26,29-34H,2-4,6-7H2,1H3,(H,21,27)(H,22,28)/t9-,10+,13-,14+,15+,16+,17-,18-,19-,20+/m1/s1
S3W InChIKey InChI 1.03 ZVODTTTYSJJUKY-SRYZRXLVSA-N
S3W SMILES_CANONICAL CACTVS 3.385 CO[C@H]1O[C@H](Cn2cc(CNC(=O)CCC(=O)N[C@@H]3O[C@@H](CO)[C@H](O)[C@H](O)[C@H]3O)nn2)[C@@H](O)[C@H](O)[C@H]1O
S3W SMILES CACTVS 3.385 CO[CH]1O[CH](Cn2cc(CNC(=O)CCC(=O)N[CH]3O[CH](CO)[CH](O)[CH](O)[CH]3O)nn2)[CH](O)[CH](O)[CH]1O
S3W SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 CO[C@@H]1[C@@H]([C@H]([C@@H]([C@H](O1)Cn2cc(nn2)CNC(=O)CCC(=O)N[C@H]3[C@@H]([C@H]([C@H]([C@H](O3)CO)O)O)O)O)O)O
S3W SMILES "OpenEye OEToolkits" 2.0.7 COC1C(C(C(C(O1)Cn2cc(nn2)CNC(=O)CCC(=O)NC3C(C(C(C(O3)CO)O)O)O)O)O)O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
S3W "SYSTEMATIC NAME" ACDLabs 12.01 "N-[(2R,3R,4S,5R,6S)-3,4,5-trihydroxy-6-(hydroxymethyl)tetrahydro-2H-pyran-2-yl]-N'-[(1-{[(2R,3S,4S,5R,6S)-3,4,5-trihydroxy-6-methoxytetrahydro-2H-pyran-2-yl]methyl}-1H-1,2,3-triazol-4-yl)methyl]butanediamide (non-preferred name)"
S3W "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}'-[(2~{R},3~{R},4~{S},5~{R},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]-~{N}-[[1-[[(2~{R},3~{S},4~{S},5~{R},6~{S})-6-methoxy-3,4,5-tris(oxidanyl)oxan-2-yl]methyl]-1,2,3-triazol-4-yl]methyl]butanediamide"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
S3W 'Create component' 2019-12-18 RCSB
S3W 'Initial release' 2020-10-28 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.09.6 'Core functionality.'
pdbeccdutils 0.8.6 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
S3W N5 N 3.062 0.181 1
S3W N4 N 4.528 0.493 2
S3W N3 N 5.278 -0.808 3
S3W N1 N -6.191 -2.053 4
S3W N2 N 0.305 -1.308 5
S3W C17 C 7.042 1.619 6
S3W C16 C 7.926 2.831 7
S3W C18 C 7.652 0.248 8
S3W C14 C 10.024 1.303 9
S3W C15 C 9.417 2.674 10
S3W C20 C 12.400 2.357 11
S3W C11 C 1.604 -2.059 12
S3W C12 C 2.902 -1.310 13
S3W C13 C 4.273 -1.920 14
S3W C19 C 6.768 -0.965 15
S3W C4 C -10.087 0.202 16
S3W C3 C -8.787 0.948 17
S3W C5 C -10.088 -1.301 18
S3W C1 C -7.489 -1.303 19
S3W C2 C -7.488 0.200 20
S3W C6 C -11.387 -2.049 21
S3W C7 C -4.891 -1.304 22
S3W C8 C -3.593 -2.055 23
S3W C9 C -2.293 -1.306 24
S3W C10 C -0.995 -2.057 25
S3W O18 O 9.143 0.088 26
S3W O14 O 11.517 1.144 27
S3W O15 O 10.299 3.886 28
S3W O16 O 7.316 4.203 29
S3W O17 O 5.552 1.777 30
S3W O5 O -8.789 -2.049 31
S3W O2 O -6.188 0.948 32
S3W O3 O -8.785 2.450 33
S3W O4 O -11.385 0.952 34
S3W O6 O -12.686 -1.298 35
S3W O10 O -0.996 -3.557 36
S3W O7 O -4.890 0.196 37
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
S3W C19 N3 SINGLE NONE 1
S3W C18 C19 SINGLE BEGINDASH 2
S3W O18 C18 SINGLE NONE 3
S3W O18 C14 SINGLE NONE 4
S3W N3 N4 SINGLE NONE 5
S3W N3 C13 SINGLE NONE 6
S3W C17 C18 SINGLE NONE 7
S3W C17 O17 SINGLE BEGINWEDGE 8
S3W C17 C16 SINGLE NONE 9
S3W N4 N5 DOUBLE NONE 10
S3W C13 C12 DOUBLE NONE 11
S3W C15 C14 SINGLE NONE 12
S3W C15 C16 SINGLE NONE 13
S3W C15 O15 SINGLE BEGINWEDGE 14
S3W C14 O14 SINGLE BEGINWEDGE 15
S3W C16 O16 SINGLE BEGINDASH 16
S3W N5 C12 SINGLE NONE 17
S3W C12 C11 SINGLE NONE 18
S3W C11 N2 SINGLE NONE 19
S3W O14 C20 SINGLE NONE 20
S3W N2 C10 SINGLE NONE 21
S3W C10 O10 DOUBLE NONE 22
S3W C10 C9 SINGLE NONE 23
S3W O6 C6 SINGLE NONE 24
S3W C9 C8 SINGLE NONE 25
S3W C5 C6 SINGLE BEGINDASH 26
S3W O7 C7 DOUBLE NONE 27
S3W C8 C7 SINGLE NONE 28
S3W O5 C5 SINGLE NONE 29
S3W O5 C1 SINGLE NONE 30
S3W C7 N1 SINGLE NONE 31
S3W C5 C4 SINGLE NONE 32
S3W C1 N1 SINGLE BEGINDASH 33
S3W C1 C2 SINGLE NONE 34
S3W C4 O4 SINGLE BEGINDASH 35
S3W C4 C3 SINGLE NONE 36
S3W C2 C3 SINGLE NONE 37
S3W C2 O2 SINGLE BEGINWEDGE 38
S3W C3 O3 SINGLE BEGINDASH 39
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
S3W MurckoScaffold S1 scaffold 'O=C(CCC(=O)N[C@H]1CCCCO1)NCc1cn(C[C@@H]2CCCCO2)nn1' InChI=1S/C18H29N5O4/c24-16(7-8-17(25)20-18-6-2-4-10-27-18)19-11-14-12-23(22-21-14)13-15-5-1-3-9-26-15/h12,15,18H,1-11,13H2,(H,19,24)(H,20,25)/t15-,18+/m0/s1 NIDXDFXPQHMJJA-MAUKXSAKSA-N
S3W amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
S3W pyranose F2 fragment OC1CCCCO1 InChI=1S/C5H10O2/c6-5-3-1-2-4-7-5/h5-6H,1-4H2 CELWCAITJAEQNL-UHFFFAOYSA-N
S3W Z1271660837 F3 fragment CCNCc1cn(C)nn1 InChI=1S/C6H12N4/c1-3-7-4-6-5-10(2)9-8-6/h5,7H,3-4H2,1-2H3 LOLVREZTZUWBEQ-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
S3W N5 S1 1
S3W N4 S1 1
S3W N3 S1 1
S3W N1 S1 1
S3W N2 S1 1
S3W C17 S1 1
S3W C16 S1 1
S3W C18 S1 1
S3W C14 S1 1
S3W C15 S1 1
S3W C11 S1 1
S3W C12 S1 1
S3W C13 S1 1
S3W C19 S1 1
S3W C4 S1 1
S3W C3 S1 1
S3W C5 S1 1
S3W C1 S1 1
S3W C2 S1 1
S3W C7 S1 1
S3W C8 S1 1
S3W C9 S1 1
S3W C10 S1 1
S3W O18 S1 1
S3W O5 S1 1
S3W O10 S1 1
S3W O7 S1 1
S3W N1 F1 1
S3W C7 F1 1
S3W O7 F1 1
S3W C8 F1 1
S3W N2 F1 2
S3W C10 F1 2
S3W O10 F1 2
S3W C9 F1 2
S3W C17 F2 1
S3W C18 F2 1
S3W O18 F2 1
S3W C14 F2 1
S3W C15 F2 1
S3W C16 F2 1
S3W O14 F2 1
S3W C9 F3 1
S3W C10 F3 1
S3W N2 F3 1
S3W C11 F3 1
S3W C12 F3 1
S3W C13 F3 1
S3W N3 F3 1
S3W C19 F3 1
S3W N4 F3 1
S3W N5 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id S3W
_pdbe_chem_comp_rdkit_properties.exactmw 535.213
_pdbe_chem_comp_rdkit_properties.amw 535.507
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 17
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 9
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 18
_pdbe_chem_comp_rdkit_properties.NumHBD 9
_pdbe_chem_comp_rdkit_properties.NumHBA 15
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 37
_pdbe_chem_comp_rdkit_properties.NumAtoms 70
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 17
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.800
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 2
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 10
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 257.194
_pdbe_chem_comp_rdkit_properties.tpsa 258.210
_pdbe_chem_comp_rdkit_properties.CrippenClogP -6.010
_pdbe_chem_comp_rdkit_properties.CrippenMR 116.437
_pdbe_chem_comp_rdkit_properties.chi0v 17.135
_pdbe_chem_comp_rdkit_properties.chi1v 8.777
_pdbe_chem_comp_rdkit_properties.chi2v 3.592
_pdbe_chem_comp_rdkit_properties.chi3v 3.592
_pdbe_chem_comp_rdkit_properties.chi4v 2.046
_pdbe_chem_comp_rdkit_properties.chi0n 50.135
_pdbe_chem_comp_rdkit_properties.chi1n 24.529
_pdbe_chem_comp_rdkit_properties.chi2n 3.592
_pdbe_chem_comp_rdkit_properties.chi3n 3.592
_pdbe_chem_comp_rdkit_properties.chi4n 2.046
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.320
_pdbe_chem_comp_rdkit_properties.kappa1 8.102
_pdbe_chem_comp_rdkit_properties.kappa2 12.961
_pdbe_chem_comp_rdkit_properties.kappa3 7.166
_pdbe_chem_comp_rdkit_properties.Phi 2.838
#
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
S3W N5 -2.890 0.359 -1.752 ETKDGv3 1
S3W N4 -3.365 0.710 -0.626 ETKDGv3 2
S3W N3 -3.351 -0.368 0.264 ETKDGv3 3
S3W N1 4.373 0.301 -0.570 ETKDGv3 4
S3W N2 -0.490 -1.409 -2.899 ETKDGv3 5
S3W C17 -5.966 -1.792 1.056 ETKDGv3 6
S3W C16 -6.770 -1.612 -0.241 ETKDGv3 7
S3W C18 -5.444 -0.421 1.594 ETKDGv3 8
S3W C14 -7.358 0.671 0.777 ETKDGv3 9
S3W C15 -7.861 -0.533 -0.069 ETKDGv3 10
S3W C20 -7.818 1.927 2.677 ETKDGv3 11
S3W C11 -1.890 -1.801 -2.764 ETKDGv3 12
S3W C12 -2.535 -1.023 -1.662 ETKDGv3 13
S3W C13 -2.806 -1.468 -0.445 ETKDGv3 14
S3W C19 -3.907 -0.358 1.613 ETKDGv3 15
S3W C4 8.274 1.778 -0.054 ETKDGv3 16
S3W C3 7.145 2.611 0.581 ETKDGv3 17
S3W C5 7.941 0.245 -0.037 ETKDGv3 18
S3W C1 5.742 0.820 -0.599 ETKDGv3 19
S3W C2 5.769 2.270 -0.055 ETKDGv3 20
S3W C6 8.760 -0.533 1.009 ETKDGv3 21
S3W C7 3.380 0.672 -1.537 ETKDGv3 22
S3W C8 1.988 0.127 -1.430 ETKDGv3 23
S3W C9 1.906 -1.262 -2.066 ETKDGv3 24
S3W C10 0.515 -1.805 -1.954 ETKDGv3 25
S3W O18 -5.939 0.687 0.852 ETKDGv3 26
S3W O14 -7.943 0.658 2.073 ETKDGv3 27
S3W O15 -9.002 -1.114 0.511 ETKDGv3 28
S3W O16 -5.896 -1.250 -1.280 ETKDGv3 29
S3W O17 -6.786 -2.405 2.019 ETKDGv3 30
S3W O5 6.562 -0.009 0.202 ETKDGv3 31
S3W O2 5.498 3.159 -1.109 ETKDGv3 32
S3W O3 7.123 2.449 1.980 ETKDGv3 33
S3W O4 9.494 2.075 0.579 ETKDGv3 34
S3W O6 8.429 -1.896 0.976 ETKDGv3 35
S3W O10 0.224 -2.577 -1.000 ETKDGv3 36
S3W O7 3.680 1.417 -2.508 ETKDGv3 37
S3W HN1 4.116 -0.397 0.165 ETKDGv3 38
S3W HN2 -0.218 -0.800 -3.704 ETKDGv3 39
S3W HC17 -5.120 -2.483 0.828 ETKDGv3 40
S3W HC16 -7.249 -2.589 -0.495 ETKDGv3 41
S3W HC18 -5.749 -0.307 2.660 ETKDGv3 42
S3W HC14 -7.676 1.586 0.224 ETKDGv3 43
S3W HC15 -8.132 -0.169 -1.089 ETKDGv3 44
S3W H20B -6.755 2.248 2.740 ETKDGv3 45
S3W H20C -8.422 2.686 2.134 ETKDGv3 46
S3W H20A -8.210 1.864 3.713 ETKDGv3 47
S3W H11A -2.426 -1.581 -3.711 ETKDGv3 48
S3W H11B -1.964 -2.895 -2.577 ETKDGv3 49
S3W HC13 -2.640 -2.463 -0.053 ETKDGv3 50
S3W H19A -3.587 0.576 2.124 ETKDGv3 51
S3W H19B -3.498 -1.212 2.196 ETKDGv3 52
S3W HC4 8.337 2.100 -1.122 ETKDGv3 53
S3W HC3 7.371 3.684 0.391 ETKDGv3 54
S3W HC5 8.214 -0.181 -1.030 ETKDGv3 55
S3W HC1 6.100 0.795 -1.657 ETKDGv3 56
S3W HC2 4.979 2.376 0.727 ETKDGv3 57
S3W HC6B 8.593 -0.114 2.028 ETKDGv3 58
S3W HC6A 9.843 -0.443 0.779 ETKDGv3 59
S3W HC8B 1.280 0.818 -1.939 ETKDGv3 60
S3W HC8A 1.699 0.069 -0.358 ETKDGv3 61
S3W HC9B 2.616 -1.952 -1.559 ETKDGv3 62
S3W HC9A 2.192 -1.203 -3.139 ETKDGv3 63
S3W HO15 -9.754 -0.483 0.357 ETKDGv3 64
S3W HO16 -6.356 -1.460 -2.134 ETKDGv3 65
S3W HO17 -6.184 -2.747 2.731 ETKDGv3 66
S3W HO2 5.197 4.011 -0.698 ETKDGv3 67
S3W HO3 6.778 1.542 2.184 ETKDGv3 68
S3W HO4 10.215 1.835 -0.060 ETKDGv3 69
S3W HO6 7.623 -2.010 1.545 ETKDGv3 70
#