data_SAH
#
_chem_comp.id SAH
_chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C14 H20 N6 O5 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2024-09-16
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 384.411
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code SAH
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1VP9
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
SAH N N N 0 1 N N N N N N -3.939 12.949 23.901 0.663 0.742 6.843 N SAH 1
SAH CA CA C 0 1 N N S N N N -4.200 11.982 24.960 -0.668 0.558 6.251 CA SAH 2
SAH CB CB C 0 1 N N N N N N -2.943 11.132 25.184 -0.553 -0.315 5.000 CB SAH 3
SAH CG CG C 0 1 N N N N N N -2.492 10.496 23.863 0.365 0.365 3.985 CG SAH 4
SAH SD SD S 0 1 N N N N N N -1.157 9.287 23.889 0.501 -0.669 2.501 SD SAH 5
SAH C C C 0 1 N N N N N N -4.719 12.651 26.250 -1.573 -0.112 7.251 C SAH 6
SAH O O O 0 1 N N N N N N -5.617 13.513 26.083 -1.112 -0.872 8.070 O SAH 7
SAH OXT OXT O 0 1 N Y N N N N -4.557 12.062 27.354 -2.893 0.132 7.232 OXT SAH 8
SAH "C5'" C5* C 0 1 N N N N N N -1.266 8.748 22.187 1.616 0.354 1.503 "C5'" SAH 9
SAH "C4'" C4* C 0 1 N N S N N N -2.548 8.017 21.888 1.883 -0.337 0.164 "C4'" SAH 10
SAH "O4'" O4* O 0 1 N N N N N N -2.591 7.839 20.440 0.652 -0.486 -0.561 "O4'" SAH 11
SAH "C3'" C3* C 0 1 N N S N N N -2.781 6.590 22.615 2.824 0.529 -0.694 "C3'" SAH 12
SAH "O3'" O3* O 0 1 N N N N N N -3.878 6.611 23.589 4.026 -0.179 -1.001 "O3'" SAH 13
SAH "C2'" C2* C 0 1 N N R N N N -3.023 5.688 21.355 2.009 0.800 -1.986 "C2'" SAH 14
SAH "O2'" O2* O 0 1 N N N N N N -3.902 4.527 21.448 2.844 0.710 -3.143 "O2'" SAH 15
SAH "C1'" C1* C 0 1 N N R N N N -3.483 6.739 20.313 0.970 -0.349 -1.963 "C1'" SAH 16
SAH N9 N9 N 0 1 Y N N N N N -3.468 6.341 18.914 -0.223 0.014 -2.730 N9 SAH 17
SAH C8 C8 C 0 1 Y N N N N N -2.455 5.677 18.202 -1.297 0.715 -2.267 C8 SAH 18
SAH N7 N7 N 0 1 Y N N N N N -2.858 5.266 17.036 -2.176 0.859 -3.215 N7 SAH 19
SAH C5 C5 C 0 1 Y N N N N N -4.192 5.728 16.955 -1.724 0.261 -4.344 C5 SAH 20
SAH C6 C6 C 0 1 Y N N N N N -5.166 5.614 15.968 -2.228 0.098 -5.645 C6 SAH 21
SAH N6 N6 N 0 1 N N N N N N -4.869 5.106 14.769 -3.462 0.617 -5.997 N6 SAH 22
SAH N1 N1 N 0 1 Y N N N N N -6.425 5.947 16.306 -1.493 -0.566 -6.531 N1 SAH 23
SAH C2 C2 C 0 1 Y N N N N N -6.694 6.366 17.522 -0.314 -1.065 -6.204 C2 SAH 24
SAH N3 N3 N 0 1 Y N N N N N -5.859 6.623 18.501 0.196 -0.936 -4.998 N3 SAH 25
SAH C4 C4 C 0 1 Y N N N N N -4.599 6.290 18.133 -0.463 -0.283 -4.048 C4 SAH 26
SAH HN1 1HN H 0 1 N N N N N N -4.774 13.514 23.752 1.260 1.096 6.110 HN1 SAH 27
SAH HN2 2HN H 0 1 N N N N N N -3.612 12.505 23.042 1.006 -0.176 7.077 HN2 SAH 28
SAH HA HA H 0 1 N N N N N N -5.026 11.304 24.641 -1.082 1.528 5.979 HA SAH 29
SAH HB1 1HB H 0 1 N N N N N N -2.124 11.716 25.665 -0.139 -1.286 5.272 HB1 SAH 30
SAH HB2 2HB H 0 1 N N N N N N -3.092 10.369 25.983 -1.541 -0.452 4.561 HB2 SAH 31
SAH HG1 1HG H 0 1 N N N N N N -3.378 10.042 23.361 -0.048 1.336 3.713 HG1 SAH 32
SAH HG2 2HG H 0 1 N N N N N N -2.228 11.307 23.145 1.354 0.502 4.424 HG2 SAH 33
SAH HXT HXT H 0 1 N Y N N N N -4.876 12.473 28.148 -3.474 -0.297 7.874 HXT SAH 34
SAH "H5'1" 1H5* H 0 0 N N N N N N -1.121 9.603 21.486 1.155 1.325 1.324 "H5'1" SAH 35
SAH "H5'2" 2H5* H 0 0 N N N N N N -0.380 8.132 21.905 2.557 0.491 2.035 "H5'2" SAH 36
SAH "H4'" H4* H 0 1 N N N N N N -3.369 8.644 22.305 2.333 -1.315 0.336 "H4'" SAH 37
SAH "H3'" H3* H 0 1 N N N N N N -1.945 6.236 23.263 3.052 1.464 -0.184 "H3'" SAH 38
SAH "HO3'" *HO3 H 0 0 N N N N N N -4.014 5.773 24.015 4.544 0.389 -1.587 "HO3'" SAH 39
SAH "H2'" H2* H 0 1 N N N N N N -2.095 5.118 21.112 1.516 1.771 -1.940 "H2'" SAH 40
SAH "HO2'" *HO2 H 0 0 N N N N N N -4.048 3.980 20.684 3.465 1.449 -3.098 "HO2'" SAH 41
SAH "H1'" H1* H 0 1 N N N N N N -4.554 6.943 20.542 1.407 -1.269 -2.349 "H1'" SAH 42
SAH H8 H8 H 0 1 N N N N N N -1.419 5.492 18.534 -1.402 1.095 -1.262 H8 SAH 43
SAH HN61 1HN6 H 0 0 N N N N N N -5.583 5.022 14.045 -3.799 0.498 -6.899 HN61 SAH 44
SAH HN62 2HN6 H 0 0 N N N N N N -4.448 4.187 14.908 -3.989 1.101 -5.343 HN62 SAH 45
SAH H2 H2 H 0 1 N Y N N N N -7.761 6.522 17.751 0.250 -1.598 -6.954 H2 SAH 46
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
SAH N CA SING N N 1
SAH N HN1 SING N N 2
SAH N HN2 SING N N 3
SAH CA CB SING N N 4
SAH CA C SING N N 5
SAH CA HA SING N N 6
SAH CB CG SING N N 7
SAH CB HB1 SING N N 8
SAH CB HB2 SING N N 9
SAH CG SD SING N N 10
SAH CG HG1 SING N N 11
SAH CG HG2 SING N N 12
SAH SD "C5'" SING N N 13
SAH C O DOUB N N 14
SAH C OXT SING N N 15
SAH OXT HXT SING N N 16
SAH "C5'" "C4'" SING N N 17
SAH "C5'" "H5'1" SING N N 18
SAH "C5'" "H5'2" SING N N 19
SAH "C4'" "O4'" SING N N 20
SAH "C4'" "C3'" SING N N 21
SAH "C4'" "H4'" SING N N 22
SAH "O4'" "C1'" SING N N 23
SAH "C3'" "O3'" SING N N 24
SAH "C3'" "C2'" SING N N 25
SAH "C3'" "H3'" SING N N 26
SAH "O3'" "HO3'" SING N N 27
SAH "C2'" "O2'" SING N N 28
SAH "C2'" "C1'" SING N N 29
SAH "C2'" "H2'" SING N N 30
SAH "O2'" "HO2'" SING N N 31
SAH "C1'" N9 SING N N 32
SAH "C1'" "H1'" SING N N 33
SAH N9 C8 SING Y N 34
SAH N9 C4 SING Y N 35
SAH C8 N7 DOUB Y N 36
SAH C8 H8 SING N N 37
SAH N7 C5 SING Y N 38
SAH C5 C6 SING Y N 39
SAH C5 C4 DOUB Y N 40
SAH C6 N6 SING N N 41
SAH C6 N1 DOUB Y N 42
SAH N6 HN61 SING N N 43
SAH N6 HN62 SING N N 44
SAH N1 C2 SING Y N 45
SAH C2 N3 DOUB Y N 46
SAH C2 H2 SING N N 47
SAH N3 C4 SING Y N 48
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
SAH SMILES ACDLabs 10.04 "O=C(O)C(N)CCSCC3OC(n2cnc1c(ncnc12)N)C(O)C3O"
SAH SMILES_CANONICAL CACTVS 3.341 "N[C@@H](CCSC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23)C(O)=O"
SAH SMILES CACTVS 3.341 "N[CH](CCSC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23)C(O)=O"
SAH SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CSCC[C@@H](C(=O)O)N)O)O)N"
SAH SMILES "OpenEye OEToolkits" 1.5.0 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)CSCCC(C(=O)O)N)O)O)N"
SAH InChI InChI 1.03 "InChI=1S/C14H20N6O5S/c15-6(14(23)24)1-2-26-3-7-9(21)10(22)13(25-7)20-5-19-8-11(16)17-4-18-12(8)20/h4-7,9-10,13,21-22H,1-3,15H2,(H,23,24)(H2,16,17,18)/t6-,7+,9+,10+,13+/m0/s1"
SAH InChIKey InChI 1.03 ZJUKTBDSGOFHSH-WFMPWKQPSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
SAH "SYSTEMATIC NAME" ACDLabs 10.04 "(2S)-2-amino-4-({[(2S,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl}sulfanyl)butanoic acid (non-preferred name)"
SAH "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S)-2-amino-4-[[(2S,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methylsulfanyl]butanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
SAH 'Create component' 1999-07-08 RCSB
SAH 'Modify descriptor' 2011-06-04 RCSB
SAH 'Other modification' 2024-09-16 RCSB
#
_pdbe_chem_comp_drugbank_details.comp_id SAH
_pdbe_chem_comp_drugbank_details.drugbank_id DB01752
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name S-adenosyl-L-homocysteine
_pdbe_chem_comp_drugbank_details.description
"5'-S-(3-Amino-3-carboxypropyl)-5'-thioadenosine. Formed from S-adenosylmethionine after transmethylation reactions."
_pdbe_chem_comp_drugbank_details.cas_number 979-92-0
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
SAH 2-S-adenosyl-L-homocysteine DrugBank ?
SAH Adenosyl-L-homocysteine DrugBank ?
SAH adenosylhomocysteine DrugBank ?
SAH AdoHcy DrugBank ?
SAH "S-(5'-adenosyl)-L-homocysteine" DrugBank ?
SAH 'S-[1-(adenin-9-yl)-1,5-dideoxy-β-D-ribofuranos-5-yl]-L-homocysteine' DrugBank ?
SAH S-Adenosylhomocysteine DrugBank ?
#
_pdbe_chem_comp_drugbank_classification.comp_id SAH
_pdbe_chem_comp_drugbank_classification.drugbank_id DB01752
_pdbe_chem_comp_drugbank_classification.parent "5'-deoxy-5'-thionucleosides"
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class "5'-deoxyribonucleosides"
_pdbe_chem_comp_drugbank_classification.superclass 'Nucleosides, nucleotides, and analogues'
_pdbe_chem_comp_drugbank_classification.description
"This compound belongs to the class of organic compounds known as 5'-deoxy-5'-thionucleosides. These are 5'-deoxyribonucleosides  in which the ribose is thio-substituted at the 5'position by a S-alkyl group."
#
loop_
_pdbe_chem_comp_drugbank_targets.comp_id
_pdbe_chem_comp_drugbank_targets.drugbank_id
_pdbe_chem_comp_drugbank_targets.name
_pdbe_chem_comp_drugbank_targets.organism
_pdbe_chem_comp_drugbank_targets.uniprot_id
_pdbe_chem_comp_drugbank_targets.pharmacologically_active
_pdbe_chem_comp_drugbank_targets.ordinal
SAH DB01752 "Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase" VACV P07617 unknown 1
SAH DB01752 'Cobalt-precorrin-4 C(11)-methyltransferase' 'Bacillus megaterium' O87696 unknown 2
SAH DB01752 'Protein-L-isoaspartate(D-aspartate) O-methyltransferase' Humans P22061 unknown 3
SAH DB01752 'Genome polyprotein' DENV-2 P12823 unknown 4
SAH DB01752 'Phenylethanolamine N-methyltransferase' Humans P11086 unknown 5
SAH DB01752 'Cyclopropane mycolic acid synthase 2' 'Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)' P9WPB5 unknown 6
SAH DB01752 'Modification methylase RsrI' 'Rhodobacter sphaeroides' P14751 unknown 7
SAH DB01752 'Catechol O-methyltransferase domain-containing protein 1' Humans Q86VU5 unknown 8
SAH DB01752 'Carminomycin 4-O-methyltransferase DnrK' 'Streptomyces peucetius' Q06528 unknown 9
SAH DB01752 'Guanidinoacetate N-methyltransferase' Humans Q14353 unknown 10
SAH DB01752 'Release factor glutamine methyltransferase' 'Escherichia coli (strain K12)' P0ACC1 unknown 11
SAH DB01752 'Release factor glutamine methyltransferase' 'Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)' Q9WYV8 unknown 12
SAH DB01752 'Protein arginine N-methyltransferase 3' Humans O60678 unknown 13
SAH DB01752 'Histamine N-methyltransferase' Humans P50135 unknown 14
SAH DB01752 'Ribosomal RNA small subunit methyltransferase H' 'Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)' Q9WZX6 unknown 15
SAH DB01752 'rRNA adenine N-6-methyltransferase' 'Bacillus subtilis' P13956 unknown 16
SAH DB01752 'tRNA (cytosine(38)-C(5))-methyltransferase' Humans O14717 unknown 17
SAH DB01752 'Glycine N-methyltransferase' Humans Q14749 unknown 18
SAH DB01752 "tRNA (cytidine(34)-2'-O)-methyltransferase" 'Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)' P44868 unknown 19
SAH DB01752 'Modification methylase PvuII' 'Proteus hauseri' P11409 unknown 20
SAH DB01752 'DNA adenine methylase' 'Enterobacteria phage T4' P04392 unknown 21
SAH DB01752 'Cyclopropane mycolic acid synthase 3' 'Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)' P9WPB3 unknown 22
SAH DB01752 'Protein arginine N-methyltransferase 1' Humans Q99873 unknown 23
SAH DB01752 'Siroheme synthase' 'Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)' P25924 unknown 24
SAH DB01752 'Modification methylase HhaI' 'Haemophilus parahaemolyticus' P05102 unknown 25
SAH DB01752 'Histone-lysine N-methyltransferase SETD7' Humans Q8WTS6 unknown 26
SAH DB01752 'tRNA (guanine-N(1)-)-methyltransferase' 'Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)' P43912 unknown 27
SAH DB01752 'Cyclopropane mycolic acid synthase MmaA2' 'Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)' Q79FX6 unknown 28
SAH DB01752 'Diphthine methyl ester synthase' Humans Q9H2P9 unknown 29
SAH DB01752 'Aclacinomycin 10-hydroxylase RdmB' 'Streptomyces purpurascens' Q54527 unknown 30
SAH DB01752 'tRNA (guanine-N(1)-)-methyltransferase' 'Shigella flexneri' P0A876 unknown 31
SAH DB01752 'Uroporphyrinogen-III C-methyltransferase' 'Pseudomonas denitrificans' P21631 unknown 32
SAH DB01752 'Uncharacterized protein' 'Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)' Q5SKH6 unknown 33
SAH DB01752 'Chemotaxis protein methyltransferase' 'Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)' P07801 unknown 34
SAH DB01752 'Modification methylase TaqI' 'Thermus aquaticus' P14385 unknown 35
SAH DB01752 'Protein-L-isoaspartate O-methyltransferase' 'Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)' Q56308 unknown 36
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
SAH N N 6.649 6.216 1
SAH CA C 8.116 5.901 2
SAH CB C 8.577 4.474 3
SAH CG C 7.571 3.361 4
SAH SD S 8.032 1.933 5
SAH C C 9.121 7.014 6
SAH O O 8.660 8.442 7
SAH OXT O 10.588 6.700 8
SAH "C5'" C 7.027 0.821 9
SAH "C4'" C 7.487 -0.607 10
SAH "O4'" O 6.604 -1.819 11
SAH "C3'" C 8.913 -1.073 12
SAH "O3'" O 10.129 -0.193 13
SAH "C2'" C 8.911 -2.573 14
SAH "O2'" O 10.123 -3.457 15
SAH "C1'" C 7.483 -3.034 16
SAH N9 N 7.018 -4.460 17
SAH C8 C 7.893 -5.667 18
SAH N7 N 7.018 -6.874 19
SAH C5 C 5.598 -6.417 20
SAH C6 C 4.299 -7.167 21
SAH N6 N 4.299 -8.667 22
SAH N1 N 3.000 -6.417 23
SAH C2 C 3.000 -4.917 24
SAH N3 N 4.299 -4.167 25
SAH C4 C 5.598 -4.917 26
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
SAH CA N SINGLE BEGINDASH 1
SAH CA CB SINGLE NONE 2
SAH CA C SINGLE NONE 3
SAH CB CG SINGLE NONE 4
SAH CG SD SINGLE NONE 5
SAH SD "C5'" SINGLE NONE 6
SAH C O DOUBLE NONE 7
SAH C OXT SINGLE NONE 8
SAH "C4'" "C5'" SINGLE BEGINDASH 9
SAH "C4'" "O4'" SINGLE NONE 10
SAH "C4'" "C3'" SINGLE NONE 11
SAH "O4'" "C1'" SINGLE NONE 12
SAH "C3'" "O3'" SINGLE BEGINWEDGE 13
SAH "C3'" "C2'" SINGLE NONE 14
SAH "C2'" "O2'" SINGLE BEGINWEDGE 15
SAH "C2'" "C1'" SINGLE NONE 16
SAH "C1'" N9 SINGLE BEGINDASH 17
SAH N9 C8 SINGLE NONE 18
SAH N9 C4 SINGLE NONE 19
SAH C8 N7 DOUBLE NONE 20
SAH N7 C5 SINGLE NONE 21
SAH C5 C6 SINGLE NONE 22
SAH C5 C4 DOUBLE NONE 23
SAH C6 N6 SINGLE NONE 24
SAH C6 N1 DOUBLE NONE 25
SAH N1 C2 SINGLE NONE 26
SAH C2 N3 DOUBLE NONE 27
SAH N3 C4 SINGLE NONE 28
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
SAH MurckoScaffold S1 scaffold 'c1ncc2ncn([C@H]3CCCO3)c2n1' InChI=1S/C9H10N4O/c1-2-8(14-3-1)13-6-12-7-4-10-5-11-9(7)13/h4-6,8H,1-3H2/t8-/m1/s1 DAKONNSVCLKUJN-MRVPVSSYSA-N
SAH adenine F1 fragment 'Nc1ncnc2nc[nH]c12' InChI=1S/C5H5N5/c6-4-3-5(9-1-7-3)10-2-8-4/h1-2H,(H3,6,7,8,9,10) GFFGJBXGBJISGV-UHFFFAOYSA-N
SAH imidazole F2 fragment 'c1c[nH]cn1' InChI=1S/C3H4N2/c1-2-5-3-4-1/h1-3H,(H,4,5) RAXXELZNTBOGNW-UHFFFAOYSA-N
SAH peptide F3 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
SAH purine F4 fragment 'c1ncc2[nH]cnc2n1' InChI=1S/C5H4N4/c1-4-5(8-2-6-1)9-3-7-4/h1-3H,(H,6,7,8,9) KDCGOANMDULRCW-UHFFFAOYSA-N
SAH pyrimidine F5 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
SAH "C4'" S1 1
SAH "O4'" S1 1
SAH "C3'" S1 1
SAH "C2'" S1 1
SAH "C1'" S1 1
SAH N9 S1 1
SAH C8 S1 1
SAH N7 S1 1
SAH C5 S1 1
SAH C6 S1 1
SAH N1 S1 1
SAH C2 S1 1
SAH N3 S1 1
SAH C4 S1 1
SAH N1 F1 1
SAH C6 F1 1
SAH C5 F1 1
SAH C4 F1 1
SAH N3 F1 1
SAH C2 F1 1
SAH N9 F1 1
SAH C8 F1 1
SAH N7 F1 1
SAH N6 F1 1
SAH C5 F2 1
SAH C4 F2 1
SAH N9 F2 1
SAH C8 F2 1
SAH N7 F2 1
SAH O F3 1
SAH C F3 1
SAH CA F3 1
SAH N F3 1
SAH N7 F4 1
SAH C8 F4 1
SAH N9 F4 1
SAH C4 F4 1
SAH C5 F4 1
SAH C6 F4 1
SAH N1 F4 1
SAH C2 F4 1
SAH N3 F4 1
SAH C5 F5 1
SAH C6 F5 1
SAH N1 F5 1
SAH C2 F5 1
SAH N3 F5 1
SAH C4 F5 1
#
_pdbe_chem_comp_rdkit_properties.comp_id SAH
_pdbe_chem_comp_rdkit_properties.exactmw 384.122
_pdbe_chem_comp_rdkit_properties.amw 384.418
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 11
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 7
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 11
_pdbe_chem_comp_rdkit_properties.NumHBD 5
_pdbe_chem_comp_rdkit_properties.NumHBA 12
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 26
_pdbe_chem_comp_rdkit_properties.NumAtoms 46
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 12
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.571
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 5
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 180.522
_pdbe_chem_comp_rdkit_properties.tpsa 182.630
_pdbe_chem_comp_rdkit_properties.CrippenClogP -2.246
_pdbe_chem_comp_rdkit_properties.CrippenMR 90.182
_pdbe_chem_comp_rdkit_properties.chi0v 12.949
_pdbe_chem_comp_rdkit_properties.chi1v 7.159
_pdbe_chem_comp_rdkit_properties.chi2v 3.267
_pdbe_chem_comp_rdkit_properties.chi3v 3.267
_pdbe_chem_comp_rdkit_properties.chi4v 2.097
_pdbe_chem_comp_rdkit_properties.chi0n 32.133
_pdbe_chem_comp_rdkit_properties.chi1n 15.856
_pdbe_chem_comp_rdkit_properties.chi2n 2.775
_pdbe_chem_comp_rdkit_properties.chi3n 2.775
_pdbe_chem_comp_rdkit_properties.chi4n 1.671
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.990
_pdbe_chem_comp_rdkit_properties.kappa1 6.005
_pdbe_chem_comp_rdkit_properties.kappa2 7.715
_pdbe_chem_comp_rdkit_properties.kappa3 3.592
_pdbe_chem_comp_rdkit_properties.Phi 1.782
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
SAH UniChem ChEMBL CHEMBL418052
SAH UniChem DrugBank DB01752
SAH UniChem PDBe SAH
SAH UniChem 'Guide to Pharmacology' 5265
SAH UniChem 'KEGG LIGAND' C00021
SAH UniChem ChEBI 16680
SAH UniChem ChEBI 57856
SAH UniChem ZINC ZINC000004228232
SAH UniChem eMolecules 474983
SAH UniChem fdasrs 8K31Q2S66S
SAH UniChem HMDB HMDB0000939
SAH UniChem 'PubChem TPHARMA' 16691590
SAH UniChem NMRShiftDB 60020492
SAH UniChem ACTor 75899-14-8
SAH UniChem Recon ahcys
SAH UniChem Nikkaji J14.397I
SAH UniChem BindingDb 50009672
SAH UniChem 'EPA CompTox Dashboard' DTXSID30895860
SAH UniChem MetaboLights MTBLC16680
SAH UniChem MetaboLights MTBLC57856
SAH UniChem BRENDA 102272
SAH UniChem BRENDA 102407
SAH UniChem BRENDA 107214
SAH UniChem BRENDA 107648
SAH UniChem BRENDA 233089
SAH UniChem BRENDA 36
SAH UniChem BRENDA 45892
SAH UniChem BRENDA 46387
SAH UniChem BRENDA 5733
SAH UniChem BRENDA 843
SAH UniChem BRENDA 92307
SAH UniChem BRENDA 94955
SAH UniChem BRENDA 96154
SAH UniChem Rhea 57856
SAH UniChem ChemicalBook CB4451354
SAH UniChem MedChemExpress HY-19528
SAH UniChem 'Probes And Drugs' PD021194
SAH UniChem PubChem 439155
SAH UniChem SureChEMBL SCHEMBL8836
SAH UniChem PubChem 25246222
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
SAH N -4.861 -2.133 -1.112 ETKDGv3 1
SAH CA -5.482 -1.063 -0.327 ETKDGv3 2
SAH CB -4.629 0.223 -0.365 ETKDGv3 3
SAH CG -3.264 0.078 0.325 ETKDGv3 4
SAH SD -1.999 -0.546 -0.842 ETKDGv3 5
SAH C -6.855 -0.764 -0.864 ETKDGv3 6
SAH O -7.025 -0.561 -2.097 ETKDGv3 7
SAH OXT -7.936 -0.683 0.008 ETKDGv3 8
SAH "C5'" -0.613 -0.567 0.355 ETKDGv3 9
SAH "C4'" 0.086 0.798 0.455 ETKDGv3 10
SAH "O4'" 1.078 0.740 1.455 ETKDGv3 11
SAH "C3'" 0.759 1.214 -0.848 ETKDGv3 12
SAH "O3'" -0.132 1.914 -1.679 ETKDGv3 13
SAH "C2'" 1.902 2.084 -0.367 ETKDGv3 14
SAH "O2'" 1.594 3.458 -0.432 ETKDGv3 15
SAH "C1'" 2.111 1.629 1.085 ETKDGv3 16
SAH N9 3.405 0.965 1.241 ETKDGv3 17
SAH C8 4.677 1.622 1.335 ETKDGv3 18
SAH N7 5.682 0.879 0.972 ETKDGv3 19
SAH C5 5.083 -0.354 0.593 ETKDGv3 20
SAH C6 5.695 -1.514 -0.069 ETKDGv3 21
SAH N6 7.107 -1.606 -0.251 ETKDGv3 22
SAH N1 4.906 -2.464 -0.497 ETKDGv3 23
SAH C2 3.468 -2.377 -0.337 ETKDGv3 24
SAH N3 2.927 -1.337 0.241 ETKDGv3 25
SAH C4 3.787 -0.300 0.730 ETKDGv3 26
SAH HN1 -5.531 -2.934 -1.174 ETKDGv3 27
SAH HN2 -4.047 -2.504 -0.572 ETKDGv3 28
SAH HA -5.589 -1.398 0.730 ETKDGv3 29
SAH HB1 -4.492 0.566 -1.414 ETKDGv3 30
SAH HB2 -5.189 1.024 0.168 ETKDGv3 31
SAH HG1 -2.945 1.078 0.684 ETKDGv3 32
SAH HG2 -3.343 -0.595 1.206 ETKDGv3 33
SAH HXT -8.866 -0.472 -0.336 ETKDGv3 34
SAH "H5'1" -0.977 -0.874 1.358 ETKDGv3 35
SAH "H5'2" 0.116 -1.337 0.026 ETKDGv3 36
SAH "H4'" -0.658 1.568 0.757 ETKDGv3 37
SAH "H3'" 1.168 0.320 -1.377 ETKDGv3 38
SAH "HO3'" 0.318 2.006 -2.558 ETKDGv3 39
SAH "H2'" 2.803 1.900 -0.993 ETKDGv3 40
SAH "HO2'" 0.784 3.621 0.120 ETKDGv3 41
SAH "H1'" 2.082 2.501 1.775 ETKDGv3 42
SAH H8 4.795 2.651 1.650 ETKDGv3 43
SAH HN61 7.739 -0.848 0.091 ETKDGv3 44
SAH HN62 7.525 -2.436 -0.727 ETKDGv3 45
SAH H2 2.837 -3.172 -0.710 ETKDGv3 46
#