data_SAV
#
_chem_comp.id SAV
_chem_comp.name N~4~-(3-methyl-1H-indazol-6-yl)-N~2~-(3,4,5-trimethoxyphenyl)pyrimidine-2,4-diamine
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C21 H22 N6 O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2008-03-13
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 406.438
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code SAV
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3CJF
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
SAV N1 N1 N 0 1 N N N N N N 15.379 18.848 17.985 -0.734 -0.282 -0.216 N1 SAV 1
SAV N3 N3 N 0 1 N N N N N N 17.987 15.176 16.369 3.027 2.487 -0.683 N3 SAV 2
SAV C4 C4 C 0 1 Y N N N N N 16.398 19.397 18.797 -2.114 -0.445 -0.043 C4 SAV 3
SAV C5 C5 C 0 1 Y N N N N N 15.522 17.699 17.186 -0.204 0.982 -0.410 C5 SAV 4
SAV C6 C6 C 0 1 Y N N N N N 14.595 16.257 15.725 -0.557 3.238 -0.734 C6 SAV 5
SAV C7 C7 C 0 1 Y N N N N N 15.747 15.517 15.670 0.808 3.438 -0.788 C7 SAV 6
SAV C8 C8 C 0 1 Y N N N N N 16.808 15.938 16.431 1.650 2.333 -0.636 C8 SAV 7
SAV C10 C10 C 0 1 Y N N N N N 19.731 16.575 17.319 5.046 1.247 -1.155 C10 SAV 8
SAV C13 C13 C 0 1 Y N N N N N 22.240 15.599 19.922 6.169 -1.983 0.533 C13 SAV 9
SAV C15 C15 C 0 1 Y N N N N N 20.561 14.565 18.878 4.338 -0.621 0.779 C15 SAV 10
SAV C17 C17 C 0 1 Y N N N N N 16.403 20.761 19.004 -2.762 -1.527 -0.623 C17 SAV 11
SAV C20 C20 C 0 1 Y N N N N N 18.363 20.601 20.379 -4.848 -0.767 0.298 C20 SAV 12
SAV C21 C21 C 0 1 N N N N N N 18.717 21.751 22.289 -7.043 -0.308 -0.500 C21 SAV 13
SAV C1 C1 C 0 1 N N N N N N 18.669 17.666 21.750 -4.168 2.300 2.188 C1 SAV 14
SAV O1 O1 O 0 1 N N N N N N 19.340 18.448 20.755 -4.901 1.215 1.617 O1 SAV 15
SAV C2 C2 C 0 1 Y N N N N N 18.353 19.235 20.176 -4.197 0.313 0.882 C2 SAV 16
SAV C3 C3 C 0 1 Y N N N N N 17.384 18.637 19.398 -2.831 0.473 0.711 C3 SAV 17
SAV N2 N2 N 0 1 Y N N N N N 14.449 17.349 16.468 -1.026 2.013 -0.546 N2 SAV 18
SAV C9 C9 C 0 1 Y N N N N N 19.081 15.359 17.255 3.861 1.394 -0.433 C9 SAV 19
SAV C11 C11 C 0 1 Y N N N N N 20.798 16.818 18.154 5.872 0.187 -0.924 C11 SAV 20
SAV C12 C12 C 0 1 Y N N N N N 21.218 15.777 18.951 5.532 -0.763 0.045 C12 SAV 21
SAV C14 C14 C 0 1 N N N N N N 23.235 16.584 20.394 7.477 -2.555 0.051 C14 SAV 22
SAV N4 N4 N 0 1 Y N N N N N 22.224 14.357 20.427 5.406 -2.488 1.459 N4 SAV 23
SAV N5 N5 N 0 1 Y N N N N N 21.202 13.755 19.778 4.274 -1.685 1.640 N5 SAV 24
SAV C16 C16 C 0 1 Y N N N N N 19.495 14.312 18.049 3.506 0.466 0.530 C16 SAV 25
SAV N6 N6 N 0 1 Y N N N N N 16.688 17.035 17.181 1.112 1.133 -0.451 N6 SAV 26
SAV C18 C18 C 0 1 Y N N N N N 17.371 21.362 19.786 -4.128 -1.689 -0.452 C18 SAV 27
SAV O2 O2 O 0 1 N N N N N N 17.350 22.735 19.962 -4.764 -2.749 -1.020 O2 SAV 28
SAV C19 C19 C 0 1 N N N N N N 16.004 23.141 20.148 -3.961 -3.656 -1.779 C19 SAV 29
SAV O3 O3 O 0 1 N N N N N N 19.374 21.159 21.163 -6.190 -0.926 0.466 O3 SAV 30
SAV HN1 HN1 H 0 1 N N N N N N 14.492 19.310 17.978 -0.148 -1.055 -0.194 HN1 SAV 31
SAV HN3 HN3 H 0 1 N N N N N N 18.059 14.469 15.665 3.412 3.353 -0.890 HN3 SAV 32
SAV H6 H6 H 0 1 N N N N N N 13.755 15.933 15.128 -1.236 4.070 -0.847 H6 SAV 33
SAV H7 H7 H 0 1 N N N N N N 15.817 14.635 15.051 1.216 4.426 -0.940 H7 SAV 34
SAV H10 H10 H 0 1 N N N N N N 19.385 17.376 16.682 5.309 1.976 -1.907 H10 SAV 35
SAV H17 H17 H 0 1 N N N N N N 15.637 21.370 18.547 -2.202 -2.243 -1.207 H17 SAV 36
SAV H21 H21 H 0 1 N N N N N N 19.444 21.903 23.100 -6.873 0.769 -0.498 H21 SAV 37
SAV H21A H21A H 0 0 N N N N N N 18.288 22.720 21.995 -6.822 -0.709 -1.489 H21A SAV 38
SAV H21B H21B H 0 0 N N N N N N 17.914 21.085 22.637 -8.084 -0.511 -0.249 H21B SAV 39
SAV H1 H1 H 0 1 N N N N N N 18.497 16.650 21.364 -3.403 1.908 2.859 H1 SAV 40
SAV H1A H1A H 0 1 N N N N N N 19.291 17.614 22.656 -3.693 2.876 1.393 H1A SAV 41
SAV H1B H1B H 0 1 N N N N N N 17.704 18.134 21.994 -4.847 2.943 2.747 H1B SAV 42
SAV H3 H3 H 0 1 N N N N N N 17.396 17.566 19.257 -2.325 1.312 1.165 H3 SAV 43
SAV H11 H11 H 0 1 N N N N N N 21.284 17.782 18.183 6.787 0.081 -1.488 H11 SAV 44
SAV H14 H14 H 0 1 N N N N N N 23.927 16.829 19.574 8.294 -2.147 0.646 H14 SAV 45
SAV H14A H14A H 0 0 N N N N N N 22.719 17.498 20.723 7.459 -3.640 0.154 H14A SAV 46
SAV H14B H14B H 0 0 N N N N N N 23.801 16.159 21.236 7.625 -2.293 -0.997 H14B SAV 47
SAV HN5 HN5 H 0 1 N N N N N N 20.938 12.804 19.940 3.560 -1.855 2.274 HN5 SAV 48
SAV H16 H16 H 0 1 N N N N N N 19.009 13.348 18.021 2.588 0.585 1.086 H16 SAV 49
SAV H19 H19 H 0 1 N N N N N N 15.797 23.246 21.223 -3.489 -3.121 -2.603 H19 SAV 50
SAV H19A H19A H 0 0 N N N N N N 15.840 24.107 19.647 -3.192 -4.085 -1.137 H19A SAV 51
SAV H19B H19B H 0 0 N N N N N N 15.331 22.385 19.718 -4.590 -4.453 -2.175 H19B SAV 52
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
SAV N1 C4 SING N N 1
SAV N1 C5 SING N N 2
SAV N3 C8 SING N N 3
SAV N3 C9 SING N N 4
SAV C4 C17 DOUB Y N 5
SAV C4 C3 SING Y N 6
SAV C5 N2 DOUB Y N 7
SAV C5 N6 SING Y N 8
SAV C6 C7 DOUB Y N 9
SAV C6 N2 SING Y N 10
SAV C7 C8 SING Y N 11
SAV C8 N6 DOUB Y N 12
SAV C10 C9 DOUB Y N 13
SAV C10 C11 SING Y N 14
SAV C13 C12 SING Y N 15
SAV C13 C14 SING N N 16
SAV C13 N4 DOUB Y N 17
SAV C15 C12 SING Y N 18
SAV C15 N5 SING Y N 19
SAV C15 C16 DOUB Y N 20
SAV C17 C18 SING Y N 21
SAV C20 C2 SING Y N 22
SAV C20 C18 DOUB Y N 23
SAV C20 O3 SING N N 24
SAV C21 O3 SING N N 25
SAV C1 O1 SING N N 26
SAV O1 C2 SING N N 27
SAV C2 C3 DOUB Y N 28
SAV C9 C16 SING Y N 29
SAV C11 C12 DOUB Y N 30
SAV N4 N5 SING Y N 31
SAV C18 O2 SING N N 32
SAV O2 C19 SING N N 33
SAV N1 HN1 SING N N 34
SAV N3 HN3 SING N N 35
SAV C6 H6 SING N N 36
SAV C7 H7 SING N N 37
SAV C10 H10 SING N N 38
SAV C17 H17 SING N N 39
SAV C21 H21 SING N N 40
SAV C21 H21A SING N N 41
SAV C21 H21B SING N N 42
SAV C1 H1 SING N N 43
SAV C1 H1A SING N N 44
SAV C1 H1B SING N N 45
SAV C3 H3 SING N N 46
SAV C11 H11 SING N N 47
SAV C14 H14 SING N N 48
SAV C14 H14A SING N N 49
SAV C14 H14B SING N N 50
SAV N5 HN5 SING N N 51
SAV C16 H16 SING N N 52
SAV C19 H19 SING N N 53
SAV C19 H19A SING N N 54
SAV C19 H19B SING N N 55
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
SAV SMILES ACDLabs 10.04 O(c1cc(cc(OC)c1OC)Nc2nccc(n2)Nc3ccc4c(c3)nnc4C)C
SAV SMILES_CANONICAL CACTVS 3.341 COc1cc(Nc2nccc(Nc3ccc4c([nH]nc4C)c3)n2)cc(OC)c1OC
SAV SMILES CACTVS 3.341 COc1cc(Nc2nccc(Nc3ccc4c([nH]nc4C)c3)n2)cc(OC)c1OC
SAV SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 Cc1c2ccc(cc2[nH]n1)Nc3ccnc(n3)Nc4cc(c(c(c4)OC)OC)OC
SAV SMILES "OpenEye OEToolkits" 1.5.0 Cc1c2ccc(cc2[nH]n1)Nc3ccnc(n3)Nc4cc(c(c(c4)OC)OC)OC
SAV InChI InChI 1.03 InChI=1S/C21H22N6O3/c1-12-15-6-5-13(9-16(15)27-26-12)23-19-7-8-22-21(25-19)24-14-10-17(28-2)20(30-4)18(11-14)29-3/h5-11H,1-4H3,(H,26,27)(H2,22,23,24,25)
SAV InChIKey InChI 1.03 SQQAPOSROFWHIB-UHFFFAOYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
SAV "SYSTEMATIC NAME" ACDLabs 10.04 N~4~-(3-methyl-1H-indazol-6-yl)-N~2~-(3,4,5-trimethoxyphenyl)pyrimidine-2,4-diamine
SAV "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "N'-(3-methyl-1H-indazol-6-yl)-N-(3,4,5-trimethoxyphenyl)pyrimidine-2,4-diamine"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
SAV 'Create component' 2008-03-13 RCSB
SAV 'Modify aromatic_flag' 2011-06-04 RCSB
SAV 'Modify descriptor' 2011-06-04 RCSB
#
_pdbe_chem_comp_drugbank_details.comp_id SAV
_pdbe_chem_comp_drugbank_details.drugbank_id DB08519
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name N~4~-(3-methyl-1H-indazol-6-yl)-N~2~-(3,4,5-trimethoxyphenyl)pyrimidine-2,4-diamine
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number ?
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
_pdbe_chem_comp_synonyms.comp_id SAV
_pdbe_chem_comp_synonyms.name GW612286X
_pdbe_chem_comp_synonyms.provenance ChEMBL
_pdbe_chem_comp_synonyms.type 'Research Code'
#
_pdbe_chem_comp_drugbank_classification.comp_id SAV
_pdbe_chem_comp_drugbank_classification.drugbank_id DB08519
_pdbe_chem_comp_drugbank_classification.parent Indazoles
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class Benzopyrazoles
_pdbe_chem_comp_drugbank_classification.superclass 'Organoheterocyclic compounds'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as indazoles. These are compounds containing an indazole, which is structurally characterized by a pyrazole fused to a benzene.'
#
_pdbe_chem_comp_drugbank_targets.comp_id SAV
_pdbe_chem_comp_drugbank_targets.drugbank_id DB08519
_pdbe_chem_comp_drugbank_targets.name 'Vascular endothelial growth factor receptor 2'
_pdbe_chem_comp_drugbank_targets.organism Humans
_pdbe_chem_comp_drugbank_targets.uniprot_id P35968
_pdbe_chem_comp_drugbank_targets.pharmacologically_active unknown
_pdbe_chem_comp_drugbank_targets.ordinal 1
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.09.6 'Core functionality.'
pdbeccdutils 0.8.6 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
SAV N1 N 9.495 -1.875 1
SAV N3 N 14.691 -1.875 2
SAV C4 C 8.196 -1.125 3
SAV C5 C 10.794 -1.125 4
SAV C6 C 12.093 1.125 5
SAV C7 C 13.392 0.375 6
SAV C8 C 13.392 -1.125 7
SAV C10 C 15.990 0.375 8
SAV C13 C 20.008 0.832 9
SAV C15 C 18.588 -1.125 10
SAV C17 C 6.897 -1.875 11
SAV C20 C 5.598 0.375 12
SAV C21 C 3.000 0.375 13
SAV C1 C 5.598 3.375 14
SAV O1 O 6.897 2.625 15
SAV C2 C 6.897 1.125 16
SAV C3 C 8.196 0.375 17
SAV N2 N 10.794 0.375 18
SAV C9 C 15.990 -1.125 19
SAV C11 C 17.290 1.125 20
SAV C12 C 18.588 0.375 21
SAV C14 C 20.474 2.258 22
SAV N4 N 20.883 -0.375 23
SAV N5 N 20.008 -1.582 24
SAV C16 C 17.290 -1.875 25
SAV N6 N 12.093 -1.875 26
SAV C18 C 5.598 -1.125 27
SAV O2 O 4.299 -1.875 28
SAV C19 C 4.299 -3.375 29
SAV O3 O 4.299 1.125 30
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
SAV N1 C4 SINGLE NONE 1
SAV N1 C5 SINGLE NONE 2
SAV N3 C8 SINGLE NONE 3
SAV N3 C9 SINGLE NONE 4
SAV C4 C17 DOUBLE NONE 5
SAV C4 C3 SINGLE NONE 6
SAV C5 N2 DOUBLE NONE 7
SAV C5 N6 SINGLE NONE 8
SAV C6 C7 DOUBLE NONE 9
SAV C6 N2 SINGLE NONE 10
SAV C7 C8 SINGLE NONE 11
SAV C8 N6 DOUBLE NONE 12
SAV C10 C9 DOUBLE NONE 13
SAV C10 C11 SINGLE NONE 14
SAV C13 C12 SINGLE NONE 15
SAV C13 C14 SINGLE NONE 16
SAV C13 N4 DOUBLE NONE 17
SAV C15 C12 SINGLE NONE 18
SAV C15 N5 SINGLE NONE 19
SAV C15 C16 DOUBLE NONE 20
SAV C17 C18 SINGLE NONE 21
SAV C20 C2 SINGLE NONE 22
SAV C20 C18 DOUBLE NONE 23
SAV C20 O3 SINGLE NONE 24
SAV C21 O3 SINGLE NONE 25
SAV C1 O1 SINGLE NONE 26
SAV O1 C2 SINGLE NONE 27
SAV C2 C3 DOUBLE NONE 28
SAV C9 C16 SINGLE NONE 29
SAV C11 C12 DOUBLE NONE 30
SAV N4 N5 SINGLE NONE 31
SAV C18 O2 SINGLE NONE 32
SAV O2 C19 SINGLE NONE 33
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
SAV MurckoScaffold S1 scaffold 'c1ccc(Nc2nccc(Nc3ccc4cn[nH]c4c3)n2)cc1' InChI=1S/C17H14N6/c1-2-4-13(5-3-1)21-17-18-9-8-16(22-17)20-14-7-6-12-11-19-23-15(12)10-14/h1-11H,(H,19,23)(H2,18,20,21,22) QTQIQNGYCKREKA-UHFFFAOYSA-N
SAV phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
SAV pyrazole F2 fragment 'c1cn[nH]c1' InChI=1S/C3H4N2/c1-2-4-5-3-1/h1-3H,(H,4,5) WTKZEGDFNFYCGP-UHFFFAOYSA-N
SAV pyrimidine F3 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
SAV Z54628578 F4 fragment CNc1ncccn1 InChI=1S/C5H7N3/c1-6-5-7-3-2-4-8-5/h2-4H,1H3,(H,6,7,8) BQNXHDSGGRTFNX-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
SAV N1 S1 1
SAV N3 S1 1
SAV C4 S1 1
SAV C5 S1 1
SAV C6 S1 1
SAV C7 S1 1
SAV C8 S1 1
SAV C10 S1 1
SAV C13 S1 1
SAV C15 S1 1
SAV C17 S1 1
SAV C20 S1 1
SAV C2 S1 1
SAV C3 S1 1
SAV N2 S1 1
SAV C9 S1 1
SAV C11 S1 1
SAV C12 S1 1
SAV N4 S1 1
SAV N5 S1 1
SAV C16 S1 1
SAV N6 S1 1
SAV C18 S1 1
SAV C4 F1 1
SAV C17 F1 1
SAV C18 F1 1
SAV C20 F1 1
SAV C2 F1 1
SAV C3 F1 1
SAV C10 F1 2
SAV C9 F1 2
SAV C16 F1 2
SAV C15 F1 2
SAV C12 F1 2
SAV C11 F1 2
SAV C13 F2 1
SAV C12 F2 1
SAV C15 F2 1
SAV N5 F2 1
SAV N4 F2 1
SAV C7 F3 1
SAV C6 F3 1
SAV N2 F3 1
SAV C5 F3 1
SAV N6 F3 1
SAV C8 F3 1
SAV C4 F4 1
SAV N1 F4 1
SAV C5 F4 1
SAV N2 F4 1
SAV C6 F4 1
SAV C7 F4 1
SAV C8 F4 1
SAV N6 F4 1
#
_pdbe_chem_comp_rdkit_properties.comp_id SAV
_pdbe_chem_comp_rdkit_properties.exactmw 406.175
_pdbe_chem_comp_rdkit_properties.amw 406.446
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 9
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 11
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 8
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 30
_pdbe_chem_comp_rdkit_properties.NumAtoms 52
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 9
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.190
_pdbe_chem_comp_rdkit_properties.NumRings 4
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 4
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 204.047
_pdbe_chem_comp_rdkit_properties.tpsa 106.210
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.782
_pdbe_chem_comp_rdkit_properties.CrippenMR 107.928
_pdbe_chem_comp_rdkit_properties.chi0v 14.408
_pdbe_chem_comp_rdkit_properties.chi1v 7.661
_pdbe_chem_comp_rdkit_properties.chi2v 3.408
_pdbe_chem_comp_rdkit_properties.chi3v 3.408
_pdbe_chem_comp_rdkit_properties.chi4v 2.179
_pdbe_chem_comp_rdkit_properties.chi0n 36.408
_pdbe_chem_comp_rdkit_properties.chi1n 18.502
_pdbe_chem_comp_rdkit_properties.chi2n 3.408
_pdbe_chem_comp_rdkit_properties.chi3n 3.408
_pdbe_chem_comp_rdkit_properties.chi4n 2.179
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -4.010
_pdbe_chem_comp_rdkit_properties.kappa1 6.243
_pdbe_chem_comp_rdkit_properties.kappa2 8.157
_pdbe_chem_comp_rdkit_properties.kappa3 3.771
_pdbe_chem_comp_rdkit_properties.Phi 1.697
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
SAV UniChem ChEMBL CHEMBL479079
SAV UniChem DrugBank DB08519
SAV UniChem ZINC ZINC000004617990
SAV UniChem 'PubChem TPHARMA' 14781619
SAV UniChem PubChem 9822610
SAV UniChem 'Probes And Drugs' PD003809
SAV UniChem BindingDb 26479
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
SAV N1 1.838 -2.575 -0.954 ETKDGv3 1
SAV N3 -1.793 0.644 -0.700 ETKDGv3 2
SAV C4 2.835 -1.608 -0.584 ETKDGv3 3
SAV C5 0.461 -2.255 -1.202 ETKDGv3 4
SAV C6 -1.716 -2.880 -1.949 ETKDGv3 5
SAV C7 -2.220 -1.683 -1.638 ETKDGv3 6
SAV C8 -1.325 -0.672 -1.029 ETKDGv3 7
SAV C10 -3.662 2.171 -0.600 ETKDGv3 8
SAV C13 -7.094 1.566 1.033 ETKDGv3 9
SAV C15 -5.204 0.315 0.783 ETKDGv3 10
SAV C17 2.860 -0.384 -1.131 ETKDGv3 11
SAV C20 4.866 0.249 0.132 ETKDGv3 12
SAV C21 6.911 1.064 1.362 ETKDGv3 13
SAV C1 6.003 -2.777 2.244 ETKDGv3 14
SAV O1 5.882 -1.503 1.618 ETKDGv3 15
SAV C2 4.870 -1.133 0.716 ETKDGv3 16
SAV C3 3.898 -1.999 0.362 ETKDGv3 17
SAV N2 -0.329 -3.159 -1.706 ETKDGv3 18
SAV C9 -3.145 0.945 -0.320 ETKDGv3 19
SAV C11 -5.051 2.525 -0.195 ETKDGv3 20
SAV C12 -5.748 1.599 0.463 ETKDGv3 21
SAV C14 -8.116 2.648 0.928 ETKDGv3 22
SAV N4 -7.321 0.414 1.598 ETKDGv3 23
SAV N5 -6.188 -0.413 1.495 ETKDGv3 24
SAV C16 -3.969 -0.048 0.443 ETKDGv3 25
SAV N6 -0.069 -0.963 -0.852 ETKDGv3 26
SAV C18 3.908 0.597 -0.746 ETKDGv3 27
SAV O2 3.924 1.895 -1.278 ETKDGv3 28
SAV C19 2.958 2.397 -2.195 ETKDGv3 29
SAV O3 5.827 1.225 0.455 ETKDGv3 30
SAV HN1 2.109 -3.585 -0.945 ETKDGv3 31
SAV HN3 -1.101 1.427 -0.731 ETKDGv3 32
SAV H6 -2.347 -3.637 -2.395 ETKDGv3 33
SAV H7 -3.258 -1.460 -1.848 ETKDGv3 34
SAV H10 -3.069 2.904 -1.131 ETKDGv3 35
SAV H17 2.128 -0.116 -1.879 ETKDGv3 36
SAV H21 7.482 2.014 1.409 ETKDGv3 37
SAV H21A 6.530 0.837 2.380 ETKDGv3 38
SAV H21B 7.595 0.266 1.005 ETKDGv3 39
SAV H1 5.107 -2.985 2.866 ETKDGv3 40
SAV H1A 6.131 -3.570 1.476 ETKDGv3 41
SAV H1B 6.897 -2.774 2.901 ETKDGv3 42
SAV H3 3.870 -3.002 0.766 ETKDGv3 43
SAV H11 -5.473 3.495 -0.420 ETKDGv3 44
SAV H14 -7.646 3.631 1.142 ETKDGv3 45
SAV H14A -8.935 2.476 1.659 ETKDGv3 46
SAV H14B -8.539 2.660 -0.098 ETKDGv3 47
SAV HN5 -6.116 -1.385 1.869 ETKDGv3 48
SAV H16 -3.579 -1.017 0.726 ETKDGv3 49
SAV H19 1.944 2.358 -1.741 ETKDGv3 50
SAV H19A 2.980 1.806 -3.134 ETKDGv3 51
SAV H19B 3.199 3.453 -2.434 ETKDGv3 52
#