data_SHV
#
_chem_comp.id SHV
_chem_comp.name "HEPTANOIC ACID"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C7 H14 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2004-04-19
_chem_comp.pdbx_modified_date 2014-05-02
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 130.185
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code SHV
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1PO8
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
SHV C1 C1 C 0 1 N N N N N N -0.522 26.584 2.884 -2.734 0.074 -0.001 C1 SHV 1
SHV O1 O1 O 0 1 N Y N N N N -1.584 25.980 3.492 -3.925 -0.545 -0.000 O1 SHV 2
SHV O2 O2 O 0 1 N N N N N N 0.229 27.561 3.559 -2.680 1.281 0.001 O2 SHV 3
SHV C2 C2 C 0 1 N N N N N N 0.108 26.521 1.528 -1.464 -0.737 0.000 C2 SHV 4
SHV C3 C3 C 0 1 N N N N N N -0.842 27.336 0.677 -0.258 0.204 -0.001 C3 SHV 5
SHV C4 C4 C 0 1 N N N N N N -0.244 27.444 -0.696 1.032 -0.620 0.001 C4 SHV 6
SHV C5 C5 C 0 1 N N N N N N -0.847 28.183 -1.866 2.238 0.322 -0.001 C5 SHV 7
SHV C6 C6 C 0 1 N N N N N N -1.741 28.361 -3.074 3.527 -0.502 0.001 C6 SHV 8
SHV C7 C7 C 0 1 N N N N N N -2.906 29.235 -2.662 4.734 0.439 -0.001 C7 SHV 9
SHV HO1 HO1 H 0 1 N Y N N N N -1.687 26.329 4.370 -4.712 0.018 0.002 HO1 SHV 10
SHV H21 H21 H 0 1 N N N N N N 1.113 26.967 1.537 -1.435 -1.364 0.892 H21 SHV 11
SHV H22 H22 H 0 1 N N N N N N 0.171 25.483 1.168 -1.434 -1.368 -0.888 H22 SHV 12
SHV H31 H31 H 0 1 N N N N N N -1.820 26.835 0.622 -0.287 0.831 -0.892 H31 SHV 13
SHV H32 H32 H 0 1 N N N N N N -0.968 28.339 1.111 -0.288 0.834 0.888 H32 SHV 14
SHV H41 H41 H 0 1 N N N N N N 0.746 27.899 -0.545 1.061 -1.247 0.892 H41 SHV 15
SHV H42 H42 H 0 1 N N N N N N -0.122 26.407 -1.041 1.061 -1.250 -0.888 H42 SHV 16
SHV H51 H51 H 0 1 N N N N N N -1.214 29.052 -1.300 2.208 0.949 -0.892 H51 SHV 17
SHV H52 H52 H 0 1 N N N N N N 0.100 28.442 -2.362 2.208 0.952 0.888 H52 SHV 18
SHV H61 H61 H 0 1 N N N N N N -1.180 28.844 -3.887 3.557 -1.129 0.892 H61 SHV 19
SHV H62 H62 H 0 1 N N N N N N -2.110 27.382 -3.414 3.557 -1.132 -0.888 H62 SHV 20
SHV H71 H71 H 0 1 N N N N N N -3.576 29.383 -3.522 5.652 -0.147 0.001 H71 SHV 21
SHV H72 H72 H 0 1 N N N N N N -3.459 28.747 -1.846 4.704 1.066 -0.892 H72 SHV 22
SHV H73 H73 H 0 1 N N N N N N -2.529 30.210 -2.319 4.704 1.070 0.888 H73 SHV 23
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
SHV C1 O1 SING N N 1
SHV C1 O2 DOUB N N 2
SHV C1 C2 SING N N 3
SHV O1 HO1 SING N N 4
SHV C2 C3 SING N N 5
SHV C2 H21 SING N N 6
SHV C2 H22 SING N N 7
SHV C3 C4 SING N N 8
SHV C3 H31 SING N N 9
SHV C3 H32 SING N N 10
SHV C4 C5 SING N N 11
SHV C4 H41 SING N N 12
SHV C4 H42 SING N N 13
SHV C5 C6 SING N N 14
SHV C5 H51 SING N N 15
SHV C5 H52 SING N N 16
SHV C6 C7 SING N N 17
SHV C6 H61 SING N N 18
SHV C6 H62 SING N N 19
SHV C7 H71 SING N N 20
SHV C7 H72 SING N N 21
SHV C7 H73 SING N N 22
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
SHV SMILES ACDLabs 12.01 O=C(O)CCCCCC
SHV InChI InChI 1.03 InChI=1S/C7H14O2/c1-2-3-4-5-6-7(8)9/h2-6H2,1H3,(H,8,9)
SHV InChIKey InChI 1.03 MNWFXJYAOYHMED-UHFFFAOYSA-N
SHV SMILES_CANONICAL CACTVS 3.385 CCCCCCC(O)=O
SHV SMILES CACTVS 3.385 CCCCCCC(O)=O
SHV SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 CCCCCCC(=O)O
SHV SMILES "OpenEye OEToolkits" 1.7.6 CCCCCCC(=O)O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
SHV "SYSTEMATIC NAME" ACDLabs 12.01 "heptanoic acid"
SHV "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "heptanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
SHV 'Create component' 2004-04-19 RCSB
SHV 'Modify descriptor' 2011-06-04 RCSB
SHV 'Modify leaving atom flag' 2014-05-02 RCSB
#
_pdbe_chem_comp_drugbank_details.comp_id SHV
_pdbe_chem_comp_drugbank_details.drugbank_id DB02938
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name 'Heptanoic acid'
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number 111-14-8
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
SHV 'Enanthic acid' DrugBank ?
SHV 'Enanthylic acid' DrugBank ?
SHV 'Heptanoic acid' DrugBank ?
SHV 'Heptoic acid' DrugBank ?
SHV 'Heptylic acid' DrugBank ?
SHV 'n-Heptanoic acid' DrugBank ?
SHV 'n-Heptoic acid' DrugBank ?
SHV 'n-Heptylic acid' DrugBank ?
SHV 'Oenanthic acid' DrugBank ?
SHV 'Oenanthylic acid' DrugBank ?
#
_pdbe_chem_comp_drugbank_classification.comp_id SHV
_pdbe_chem_comp_drugbank_classification.drugbank_id DB02938
_pdbe_chem_comp_drugbank_classification.parent 'Medium-chain fatty acids'
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Fatty Acyls'
_pdbe_chem_comp_drugbank_classification.superclass 'Lipids and lipid-like molecules'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as medium-chain fatty acids. These are fatty acids with an aliphatic tail that contains between 4 and 12 carbon atoms.'
#
_pdbe_chem_comp_drugbank_targets.comp_id SHV
_pdbe_chem_comp_drugbank_targets.drugbank_id DB02938
_pdbe_chem_comp_drugbank_targets.name 'Phospholipase A2'
_pdbe_chem_comp_drugbank_targets.organism Humans
_pdbe_chem_comp_drugbank_targets.uniprot_id P04054
_pdbe_chem_comp_drugbank_targets.pharmacologically_active unknown
_pdbe_chem_comp_drugbank_targets.ordinal 1
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
SHV C1 C 5.104 0.375 1
SHV O1 O 3.805 1.125 2
SHV O2 O 5.104 -1.125 3
SHV C2 C 6.404 1.125 4
SHV C3 C 7.702 0.375 5
SHV C4 C 9.002 1.125 6
SHV C5 C 10.301 0.375 7
SHV C6 C 11.600 1.125 8
SHV C7 C 12.899 0.375 9
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
SHV C1 O1 SINGLE NONE 1
SHV C1 O2 DOUBLE NONE 2
SHV C1 C2 SINGLE NONE 3
SHV C2 C3 SINGLE NONE 4
SHV C3 C4 SINGLE NONE 5
SHV C4 C5 SINGLE NONE 6
SHV C5 C6 SINGLE NONE 7
SHV C6 C7 SINGLE NONE 8
#
#
#
_pdbe_chem_comp_rdkit_properties.comp_id SHV
_pdbe_chem_comp_rdkit_properties.exactmw 130.099
_pdbe_chem_comp_rdkit_properties.amw 130.187
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 2
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 6
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 2
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 9
_pdbe_chem_comp_rdkit_properties.NumAtoms 23
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 2
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.857
_pdbe_chem_comp_rdkit_properties.NumRings 0
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 75.641
_pdbe_chem_comp_rdkit_properties.tpsa 37.300
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.041
_pdbe_chem_comp_rdkit_properties.CrippenMR 36.395
_pdbe_chem_comp_rdkit_properties.chi0v 4.316
_pdbe_chem_comp_rdkit_properties.chi1v 1.908
_pdbe_chem_comp_rdkit_properties.chi2v 0.352
_pdbe_chem_comp_rdkit_properties.chi3v 0.352
_pdbe_chem_comp_rdkit_properties.chi4v 0.145
_pdbe_chem_comp_rdkit_properties.chi0n 18.316
_pdbe_chem_comp_rdkit_properties.chi1n 8.816
_pdbe_chem_comp_rdkit_properties.chi2n 0.352
_pdbe_chem_comp_rdkit_properties.chi3n 0.352
_pdbe_chem_comp_rdkit_properties.chi4n 0.145
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.530
_pdbe_chem_comp_rdkit_properties.kappa1 1.025
_pdbe_chem_comp_rdkit_properties.kappa2 5.604
_pdbe_chem_comp_rdkit_properties.kappa3 7.470
_pdbe_chem_comp_rdkit_properties.Phi 0.638
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
SHV UniChem ChEMBL CHEMBL320358
SHV UniChem DrugBank DB02938
SHV UniChem PDBe SHV
SHV UniChem 'KEGG LIGAND' C17714
SHV UniChem ChEBI 45571
SHV UniChem ZINC ZINC000001577199
SHV UniChem fdasrs THE3YNP39D
SHV UniChem HMDB HMDB0000666
SHV UniChem NMRShiftDB 10008718
SHV UniChem 'EPA CompTox Dashboard' DTXSID2021600
SHV UniChem LipidMaps LMFA01010007
SHV UniChem MetaboLights MTBLC45571
SHV UniChem BRENDA 137282
SHV UniChem BRENDA 2144
SHV UniChem BRENDA 4648
SHV UniChem ChemicalBook CB7852833
SHV UniChem rxnorm 'HEPTANOIC ACID'
SHV UniChem 'Probes And Drugs' PD007548
SHV UniChem eMolecules 482229
SHV UniChem SureChEMBL SCHEMBL20552731
SHV UniChem SureChEMBL SCHEMBL3564
SHV UniChem 'PubChem TPHARMA' 15140960
SHV UniChem PubChem 135372455
SHV UniChem PubChem 8094
SHV UniChem Mcule MCULE-1489137568
SHV UniChem ACTor 111-14-8
SHV UniChem ACTor 68937-74-6
SHV UniChem ACTor 7563-37-3
SHV UniChem Nikkaji J1.985B
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
SHV C1 -2.721 0.433 0.532 ETKDGv3 1
SHV O1 -3.907 0.144 -0.136 ETKDGv3 2
SHV O2 -2.472 1.614 0.893 ETKDGv3 3
SHV C2 -1.727 -0.657 0.791 ETKDGv3 4
SHV C3 -0.958 -1.047 -0.481 ETKDGv3 5
SHV C4 -0.134 0.097 -1.107 ETKDGv3 6
SHV C5 0.939 0.706 -0.187 ETKDGv3 7
SHV C6 2.006 -0.313 0.242 ETKDGv3 8
SHV C7 3.140 0.367 1.003 ETKDGv3 9
SHV HO1 -4.584 0.872 -0.330 ETKDGv3 10
SHV H21 -2.277 -1.550 1.159 ETKDGv3 11
SHV H22 -1.025 -0.359 1.598 ETKDGv3 12
SHV H31 -0.293 -1.906 -0.253 ETKDGv3 13
SHV H32 -1.686 -1.408 -1.240 ETKDGv3 14
SHV H41 0.359 -0.288 -2.026 ETKDGv3 15
SHV H42 -0.823 0.907 -1.432 ETKDGv3 16
SHV H51 0.467 1.163 0.708 ETKDGv3 17
SHV H52 1.434 1.528 -0.748 ETKDGv3 18
SHV H61 2.426 -0.819 -0.654 ETKDGv3 19
SHV H62 1.553 -1.080 0.905 ETKDGv3 20
SHV H71 2.748 0.870 1.912 ETKDGv3 21
SHV H72 3.889 -0.393 1.312 ETKDGv3 22
SHV H73 3.644 1.118 0.357 ETKDGv3 23
#