data_SMQ
#
_chem_comp.id SMQ
_chem_comp.name "SIMOCYCLINONE C4"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C37 H38 O15"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2010-12-17
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 722.689
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code SMQ
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 2Y31
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
SMQ O4 O4 O 0 1 N N N N N N 33.846 -24.034 -5.902 13.962 5.483 -0.299 O4 SMQ 1
SMQ C1A C1A C 0 1 Y N N N N N 44.285 -35.626 1.331 -1.385 -1.555 0.122 C1A SMQ 2
SMQ O1A O1A O 0 1 N N N N N N 46.086 -34.360 2.262 -0.960 0.139 -1.496 O1A SMQ 3
SMQ C1B C1B C 0 1 Y N N N N N 45.637 -35.452 1.611 -1.691 -0.326 -0.449 C1B SMQ 4
SMQ O1B O1B O 0 1 N N N N N N 48.353 -34.700 1.728 -2.519 2.798 0.280 O1B SMQ 5
SMQ C1C C1C C 0 1 Y N N N N N 46.571 -36.379 1.211 -2.740 0.424 0.050 C1C SMQ 6
SMQ O1C O1C O 0 1 N N N N N N 50.699 -37.210 2.151 -4.182 1.612 -2.980 O1C SMQ 7
SMQ C1D C1D C 0 1 N N S N N N 48.049 -36.097 1.579 -3.072 1.768 -0.543 C1D SMQ 8
SMQ O1D O1D O 0 1 N N N N N N 51.706 -39.399 -1.207 -8.646 0.817 -1.301 O1D SMQ 9
SMQ C1E C1E C 0 1 N N S N N N 48.995 -36.681 0.572 -4.591 1.950 -0.631 C1E SMQ 10
SMQ O1E O1E O 0 1 N N N N N N 48.655 -41.152 -1.100 -7.999 0.494 2.300 O1E SMQ 11
SMQ C1F C1F C 0 1 N N S N N N 50.485 -36.582 0.895 -5.180 2.002 -2.034 C1F SMQ 12
SMQ O1F O1F O 0 1 N N N N N N 49.816 -39.744 0.633 -6.707 -0.554 0.212 O1F SMQ 13
SMQ C1G C1G C 0 1 N N N N N N 51.391 -37.227 -0.189 -6.379 1.059 -2.148 C1G SMQ 14
SMQ O1G O1G O 0 1 N N N N N N 46.790 -39.622 -0.175 -4.885 0.831 2.806 O1G SMQ 15
SMQ C1H C1H C 0 1 N N R N N N 50.769 -38.345 -1.085 -7.374 1.410 -1.031 C1H SMQ 16
SMQ O1H O1H O 0 1 N N N N N N 48.674 -36.385 -0.744 -5.182 2.833 0.338 O1H SMQ 17
SMQ C1I C1I C 0 1 N N N N N N 50.249 -37.686 -2.393 -7.506 2.932 -0.955 C1I SMQ 18
SMQ C1J C1J C 0 1 N N N N N N 49.476 -38.597 -3.312 -8.253 3.357 0.273 C1J SMQ 19
SMQ C1K C1K C 0 1 N N N N N N 49.408 -38.246 -4.775 -8.914 4.711 0.275 C1K SMQ 20
SMQ C1L C1L C 0 1 N N N N N N 48.917 -39.770 -2.851 -8.363 2.600 1.357 C1L SMQ 21
SMQ C1M C1M C 0 1 N N N N N N 49.044 -40.067 -1.508 -7.749 1.269 1.400 C1M SMQ 22
SMQ C1N C1N C 0 1 N N R N N N 49.572 -39.018 -0.515 -6.807 0.869 0.287 C1N SMQ 23
SMQ C1O C1O C 0 1 N N R N N N 48.519 -37.900 -0.213 -5.429 1.452 0.549 C1O SMQ 24
SMQ C1P C1P C 0 1 N N N N N N 47.109 -38.444 0.075 -4.621 0.740 1.626 C1P SMQ 25
SMQ C1Q C1Q C 0 1 Y N N N N N 46.156 -37.520 0.517 -3.488 -0.072 1.126 C1Q SMQ 26
SMQ C1R C1R C 0 1 Y N N N N N 44.809 -37.719 0.217 -3.172 -1.301 1.698 C1R SMQ 27
SMQ C1S C1S C 0 1 Y N N N N N 43.870 -36.761 0.627 -2.122 -2.040 1.187 C1S SMQ 28
SMQ C2A C2A C 0 1 N N R N N N 43.278 -34.572 1.811 -0.244 -2.371 -0.429 C2A SMQ 29
SMQ O2A O2A O 0 1 N N N N N N 42.000 -35.167 1.972 -0.459 -3.752 -0.132 O2A SMQ 30
SMQ C2B C2B C 0 1 N N N N N N 43.106 -33.523 0.742 1.068 -1.911 0.212 C2B SMQ 31
SMQ O2B O2B O 0 1 N N N N N N 39.965 -32.299 2.308 2.946 -5.096 -0.556 O2B SMQ 32
SMQ C2C C2C C 0 1 N N R N N N 42.049 -32.495 1.174 2.214 -2.785 -0.308 C2C SMQ 33
SMQ O2C O2C O 0 1 N N N N N N 38.734 -32.060 0.421 2.572 -6.543 1.073 O2C SMQ 34
SMQ C2D C2D C 0 1 N N R N N N 40.784 -33.156 1.535 1.902 -4.253 -0.003 C2D SMQ 35
SMQ O2D O2D O 0 1 N N N N N N 41.875 -31.703 0.016 3.432 -2.411 0.340 O2D SMQ 36
SMQ C2E C2E C 0 1 N N R N N N 41.091 -34.282 2.531 0.557 -4.622 -0.635 C2E SMQ 37
SMQ C2F C2F C 0 1 N N N N N N 39.866 -35.107 2.904 0.209 -6.070 -0.284 C2F SMQ 38
SMQ C2G C2G C 0 1 N N N N N N 38.967 -31.703 1.584 3.201 -6.249 0.084 C2G SMQ 39
SMQ C2H C2H C 0 1 N N N N N N 38.201 -30.524 2.258 4.272 -7.176 -0.432 C2H SMQ 40
SMQ C3A C3A C 0 1 N N N N N N 41.674 -30.397 0.374 4.170 -1.449 -0.252 C3A SMQ 41
SMQ O3A O3A O 0 1 N N N N N N 41.936 -29.960 1.506 3.790 -0.942 -1.291 O3A SMQ 42
SMQ C3B C3B C 0 1 N N N N N N 41.139 -29.623 -0.627 5.390 -1.028 0.336 C3B SMQ 43
SMQ O3B O3B O 0 1 N N N N N N 34.936 -25.928 -6.657 13.605 4.015 1.331 O3B SMQ 44
SMQ C3C C3C C 0 1 N N N N N N 40.730 -28.303 -0.592 6.133 -0.060 -0.260 C3C SMQ 45
SMQ C3D C3D C 0 1 N N N N N N 39.796 -28.213 -1.802 7.346 0.357 0.325 C3D SMQ 46
SMQ C3E C3E C 0 1 N N N N N N 39.236 -26.835 -2.056 8.091 1.327 -0.272 C3E SMQ 47
SMQ C3F C3F C 0 1 N N N N N N 38.471 -26.888 -3.377 9.303 1.745 0.312 C3F SMQ 48
SMQ C3G C3G C 0 1 N N N N N N 37.715 -25.640 -3.656 10.048 2.715 -0.285 C3G SMQ 49
SMQ C3H C3H C 0 1 N N N N N N 36.697 -25.892 -4.773 11.261 3.133 0.300 C3H SMQ 50
SMQ C3I C3I C 0 1 N N N N N N 35.715 -24.877 -4.833 12.004 4.101 -0.296 C3I SMQ 51
SMQ C3J C3J C 0 1 N N N N N N 34.773 -24.935 -5.854 13.224 4.521 0.293 C3J SMQ 52
SMQ HO4 HO4 H 0 1 N N N N N N 33.274 -24.207 -6.640 14.776 5.702 0.175 HO4 SMQ 53
SMQ HO1A HO1A H 0 0 N N N N N N 46.192 -34.562 3.184 -1.301 -0.125 -2.361 HO1A SMQ 54
SMQ HO1B HO1B H 0 0 N N N N N N 48.420 -34.487 2.651 -1.558 2.754 0.372 HO1B SMQ 55
SMQ HO1C HO1C H 0 0 N N N N N N 50.747 -38.151 2.031 -4.485 1.621 -3.898 HO1C SMQ 56
SMQ H1D H1D H 0 1 N N N N N N 48.185 -36.583 2.556 -2.644 1.837 -1.543 H1D SMQ 57
SMQ HO1D HO1D H 0 0 N N N N N N 51.916 -39.532 -2.124 -9.047 1.106 -2.132 HO1D SMQ 58
SMQ H1F H1F H 0 1 N N N N N N 50.763 -35.518 0.924 -5.503 3.021 -2.251 H1F SMQ 59
SMQ HO1F HO1F H 0 0 N N N N N N 49.872 -40.668 0.418 -7.552 -1.000 0.060 HO1F SMQ 60
SMQ H1G H1G H 0 1 N N N N N N 51.706 -36.417 -0.864 -6.856 1.187 -3.119 H1G SMQ 61
SMQ H1GA H1GA H 0 0 N N N N N N 52.192 -37.729 0.374 -6.046 0.027 -2.035 H1GA SMQ 62
SMQ H1I H1I H 0 1 N N N N N N 49.581 -36.860 -2.106 -6.510 3.375 -0.937 H1I SMQ 63
SMQ H1IA H1IA H 0 0 N N N N N N 51.141 -37.370 -2.953 -8.039 3.288 -1.836 H1IA SMQ 64
SMQ H1K H1K H 0 1 N N N N N N 49.391 -37.152 -4.890 -9.932 4.619 -0.102 H1K SMQ 65
SMQ H1KA H1KA H 0 0 N N N N N N 50.289 -38.655 -5.291 -8.937 5.102 1.292 H1KA SMQ 66
SMQ H1KB H1KB H 0 0 N N N N N N 48.494 -38.674 -5.212 -8.350 5.392 -0.363 H1KB SMQ 67
SMQ H1L H1L H 0 1 N N N N N N 48.395 -40.437 -3.521 -8.907 2.967 2.215 H1L SMQ 68
SMQ H1R H1R H 0 1 N N N N N N 44.493 -38.599 -0.324 -3.745 -1.676 2.533 H1R SMQ 69
SMQ H1S H1S H 0 1 N N N N N N 42.824 -36.900 0.398 -1.871 -2.994 1.627 H1S SMQ 70
SMQ H2A H2A H 0 1 N N N N N N 43.650 -34.146 2.754 -0.189 -2.236 -1.509 H2A SMQ 71
SMQ H2B H2B H 0 1 N N N N N N 44.065 -33.010 0.580 1.256 -0.870 -0.050 H2B SMQ 72
SMQ H2BA H2BA H 0 0 N N N N N N 42.777 -34.008 -0.189 0.998 -2.008 1.295 H2BA SMQ 73
SMQ H2C H2C H 0 1 N N N N N N 42.354 -31.918 2.059 2.316 -2.650 -1.385 H2C SMQ 74
SMQ H2D H2D H 0 1 N N N N N N 40.309 -33.473 0.595 1.850 -4.398 1.077 H2D SMQ 75
SMQ H2E H2E H 0 1 N N N N N N 41.480 -33.784 3.432 0.623 -4.516 -1.718 H2E SMQ 76
SMQ H2F H2F H 0 1 N N N N N N 39.873 -35.306 3.986 -0.749 -6.333 -0.733 H2F SMQ 77
SMQ H2FA H2FA H 0 0 N N N N N N 38.955 -34.550 2.639 0.984 -6.734 -0.667 H2FA SMQ 78
SMQ H2FB H2FB H 0 0 N N N N N N 39.886 -36.061 2.356 0.144 -6.176 0.799 H2FB SMQ 79
SMQ H2H H2H H 0 1 N N N N N N 38.021 -30.761 3.317 4.333 -8.053 0.212 H2H SMQ 80
SMQ H2HA H2HA H 0 0 N N N N N N 38.803 -29.606 2.185 4.024 -7.487 -1.447 H2HA SMQ 81
SMQ H2HB H2HB H 0 0 N N N N N N 37.239 -30.373 1.747 5.231 -6.658 -0.434 H2HB SMQ 82
SMQ H3B H3B H 0 1 N N N N N N 41.021 -30.118 -1.580 5.728 -1.478 1.258 H3B SMQ 83
SMQ H3C H3C H 0 1 N N N N N N 41.001 -27.530 0.112 5.795 0.389 -1.182 H3C SMQ 84
SMQ H3D H3D H 0 1 N N N N N N 39.558 -29.065 -2.422 7.685 -0.092 1.247 H3D SMQ 85
SMQ H3E H3E H 0 1 N N N N N N 39.354 -25.970 -1.420 7.753 1.777 -1.194 H3E SMQ 86
SMQ H3F H3F H 0 1 N N N N N N 38.479 -27.742 -4.038 9.641 1.295 1.234 H3F SMQ 87
SMQ H3G H3G H 0 1 N N N N N N 37.861 -24.698 -3.148 9.710 3.165 -1.206 H3G SMQ 88
SMQ H3H H3H H 0 1 N N N N N N 36.726 -26.744 -5.436 11.599 2.683 1.222 H3H SMQ 89
SMQ H3I H3I H 0 1 N N N N N N 35.697 -24.079 -4.106 11.666 4.551 -1.217 H3I SMQ 90
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
SMQ O4 C3J SING N N 1
SMQ O4 HO4 SING N N 2
SMQ C1S C1A DOUB Y N 3
SMQ C1A C1B SING Y N 4
SMQ C1A C2A SING N N 5
SMQ C1B O1A SING N N 6
SMQ O1A HO1A SING N N 7
SMQ C1C C1B DOUB Y N 8
SMQ C1D O1B SING N N 9
SMQ O1B HO1B SING N N 10
SMQ C1Q C1C SING Y N 11
SMQ C1C C1D SING N N 12
SMQ C1F O1C SING N N 13
SMQ O1C HO1C SING N N 14
SMQ C1E C1D SING N N 15
SMQ C1D H1D SING N N 16
SMQ O1D C1H SING N N 17
SMQ O1D HO1D SING N N 18
SMQ O1H C1E SING N N 19
SMQ C1O C1E SING N N 20
SMQ C1E C1F SING N N 21
SMQ C1M O1E DOUB N N 22
SMQ C1G C1F SING N N 23
SMQ C1F H1F SING N N 24
SMQ C1N O1F SING N N 25
SMQ O1F HO1F SING N N 26
SMQ C1H C1G SING N N 27
SMQ C1G H1G SING N N 28
SMQ C1G H1GA SING N N 29
SMQ O1G C1P DOUB N N 30
SMQ C1I C1H SING N N 31
SMQ C1H C1N SING N N 32
SMQ O1H C1O SING N N 33
SMQ C1J C1I SING N N 34
SMQ C1I H1I SING N N 35
SMQ C1I H1IA SING N N 36
SMQ C1K C1J SING N N 37
SMQ C1J C1L DOUB N N 38
SMQ C1K H1K SING N N 39
SMQ C1K H1KA SING N N 40
SMQ C1K H1KB SING N N 41
SMQ C1L C1M SING N N 42
SMQ C1L H1L SING N N 43
SMQ C1M C1N SING N N 44
SMQ C1N C1O SING N N 45
SMQ C1O C1P SING N N 46
SMQ C1P C1Q SING N N 47
SMQ C1R C1Q DOUB Y N 48
SMQ C1R C1S SING Y N 49
SMQ C1R H1R SING N N 50
SMQ C1S H1S SING N N 51
SMQ C2B C2A SING N N 52
SMQ C2A O2A SING N N 53
SMQ C2A H2A SING N N 54
SMQ O2A C2E SING N N 55
SMQ C2B C2C SING N N 56
SMQ C2B H2B SING N N 57
SMQ C2B H2BA SING N N 58
SMQ C2D O2B SING N N 59
SMQ C2G O2B SING N N 60
SMQ O2D C2C SING N N 61
SMQ C2C C2D SING N N 62
SMQ C2C H2C SING N N 63
SMQ O2C C2G DOUB N N 64
SMQ C2D C2E SING N N 65
SMQ C2D H2D SING N N 66
SMQ O2D C3A SING N N 67
SMQ C2E C2F SING N N 68
SMQ C2E H2E SING N N 69
SMQ C2F H2F SING N N 70
SMQ C2F H2FA SING N N 71
SMQ C2F H2FB SING N N 72
SMQ C2G C2H SING N N 73
SMQ C2H H2H SING N N 74
SMQ C2H H2HA SING N N 75
SMQ C2H H2HB SING N N 76
SMQ C3B C3A SING N N 77
SMQ C3A O3A DOUB N N 78
SMQ C3B C3C DOUB N E 79
SMQ C3B H3B SING N N 80
SMQ O3B C3J DOUB N N 81
SMQ C3D C3C SING N N 82
SMQ C3C H3C SING N N 83
SMQ C3E C3D DOUB N N 84
SMQ C3D H3D SING N E 85
SMQ C3F C3E SING N N 86
SMQ C3E H3E SING N N 87
SMQ C3G C3F DOUB N N 88
SMQ C3F H3F SING N E 89
SMQ C3H C3G SING N N 90
SMQ C3G H3G SING N N 91
SMQ C3I C3H DOUB N N 92
SMQ C3H H3H SING N E 93
SMQ C3J C3I SING N N 94
SMQ C3I H3I SING N N 95
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
SMQ SMILES ACDLabs 12.01 O=C(O)CCCCCCCCC(=O)OC1CC(OC(C)C1OC(=O)C)c6ccc5C(=O)C34OC4(C(O)CC2(O)CC(=CC(=O)C23O)C)C(O)c5c6O
SMQ SMILES_CANONICAL CACTVS 3.352 C[C@H]1O[C@H](C[C@@H](OC(=O)\C=C\C=C\C=C\C=C\C(O)=O)[C@@H]1OC(C)=O)c2ccc3C(=O)[C@@]45O[C@@]4([C@@H](O)C[C@]6(O)CC(=CC(=O)[C@]56O)C)[C@@H](O)c3c2O
SMQ SMILES CACTVS 3.352 C[CH]1O[CH](C[CH](OC(=O)C=CC=CC=CC=CC(O)=O)[CH]1OC(C)=O)c2ccc3C(=O)[C]45O[C]4([CH](O)C[C]6(O)CC(=CC(=O)[C]56O)C)[CH](O)c3c2O
SMQ SMILES_CANONICAL "OpenEye OEToolkits" 1.6.1 C[C@@H]1[C@H]([C@@H](C[C@@H](O1)c2ccc3c(c2O)[C@@H]([C@@]45[C@H](C[C@@]6(CC(=CC(=O)[C@@]6([C@]4(C3=O)O5)O)C)O)O)O)OC(=O)C=C\C=C\C=C\C=C\C(=O)O)OC(=O)C
SMQ SMILES "OpenEye OEToolkits" 1.6.1 CC1C(C(CC(O1)c2ccc3c(c2O)C(C45C(CC6(CC(=CC(=O)C6(C4(C3=O)O5)O)C)O)O)O)OC(=O)C=CC=CC=CC=CC(=O)O)OC(=O)C
SMQ InChI InChI 1.03 InChI=1S/C37H38O15/c1-18-14-25(39)36(48)34(47,16-18)17-26(40)35-33(46)29-22(32(45)37(35,36)52-35)13-12-21(30(29)44)23-15-24(31(19(2)49-23)50-20(3)38)51-28(43)11-9-7-5-4-6-8-10-27(41)42/h4-14,19,23-24,26,31,33,40,44,46-48H,15-17H2,1-3H3,(H,41,42)/b6-4+,7-5+,10-8+,11-9+/t19-,23-,24-,26+,31-,33+,34-,35+,36-,37-/m1/s1
SMQ InChIKey InChI 1.03 FTHVOUWMLYLIFE-WSOZGFGQSA-N
#
_pdbx_chem_comp_identifier.comp_id SMQ
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program ACDLabs
_pdbx_chem_comp_identifier.program_version 12.01
_pdbx_chem_comp_identifier.identifier
(1R)-4-O-acetyl-1,5-anhydro-3-O-(9-carboxynonanoyl)-2,6-dideoxy-1-[(4aR,6S,6aS,7S,12aS,12bR)-4a,6,7,8,12b-pentahydroxy-3-methyl-1,12-dioxo-1,4,4a,5,6,7,12,12b-octahydro-6a,12a-epoxytetraphen-9-yl]-D-arabino-hexitol
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
SMQ 'Create component' 2010-12-17 EBI
SMQ 'Modify aromatic_flag' 2011-06-04 RCSB
SMQ 'Modify descriptor' 2011-06-04 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
SMQ O4 O 25.961 5.517 1
SMQ C1A C 9.088 1.702 2
SMQ O1A O 6.433 1.645 3
SMQ C1B C 7.741 0.910 4
SMQ O1B O 5.167 -0.652 5
SMQ C1C C 7.765 -0.652 6
SMQ O1C O 3.811 -2.897 7
SMQ C1D C 6.466 -1.402 8
SMQ O1D O 5.149 -6.766 9
SMQ C1E C 6.466 -2.902 10
SMQ O1E O 10.717 -5.966 11
SMQ C1F C 5.101 -3.662 12
SMQ O1F O 9.082 -4.454 13
SMQ C1G C 5.089 -5.224 14
SMQ O1G O 10.363 -3.652 15
SMQ C1H C 6.442 -6.006 16
SMQ O1H O 6.466 -4.402 17
SMQ C1I C 6.430 -7.633 18
SMQ C1J C 7.839 -8.447 19
SMQ C1K C 7.845 -9.947 20
SMQ C1L C 9.242 -7.622 21
SMQ C1M C 9.217 -5.995 22
SMQ C1N C 7.789 -5.214 23
SMQ C1O C 7.765 -3.652 24
SMQ C1P C 9.064 -2.902 25
SMQ C1Q C 9.064 -1.402 26
SMQ C1R C 10.429 -0.642 27
SMQ C1S C 10.441 0.921 28
SMQ C2A C 9.082 3.202 29
SMQ O2A O 7.780 3.947 30
SMQ C2B C 10.378 3.957 31
SMQ O2B O 9.065 7.702 32
SMQ C2C C 10.373 5.457 33
SMQ O2C O 6.467 7.692 34
SMQ C2D C 9.071 6.202 35
SMQ O2D O 11.669 6.212 36
SMQ C2E C 7.774 5.447 37
SMQ C2F C 6.473 6.192 38
SMQ C2G C 7.763 8.447 39
SMQ C2H C 7.757 9.947 40
SMQ C3A C 12.971 5.467 41
SMQ O3A O 12.976 3.967 42
SMQ C3B C 14.267 6.222 43
SMQ O3B O 24.653 7.762 44
SMQ C3C C 15.569 5.477 45
SMQ C3D C 16.865 6.232 46
SMQ C3E C 18.167 5.487 47
SMQ C3F C 19.463 6.242 48
SMQ C3G C 20.765 5.497 49
SMQ C3H C 22.061 6.252 50
SMQ C3I C 23.363 5.507 51
SMQ C3J C 24.659 6.262 52
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
SMQ O4 C3J SINGLE NONE 1
SMQ C1S C1A SINGLE NONE 2
SMQ C1A C1B DOUBLE NONE 3
SMQ C2A C1A SINGLE BEGINDASH 4
SMQ C1B O1A SINGLE NONE 5
SMQ C1C C1B SINGLE NONE 6
SMQ C1D O1B SINGLE BEGINWEDGE 7
SMQ C1Q C1C DOUBLE NONE 8
SMQ C1C C1D SINGLE NONE 9
SMQ C1F O1C SINGLE BEGINDASH 10
SMQ C1E C1D SINGLE NONE 11
SMQ C1H O1D SINGLE BEGINDASH 12
SMQ C1E O1H SINGLE BEGINWEDGE 13
SMQ C1O C1E SINGLE NONE 14
SMQ C1E C1F SINGLE NONE 15
SMQ C1M O1E DOUBLE NONE 16
SMQ C1G C1F SINGLE NONE 17
SMQ C1N O1F SINGLE BEGINDASH 18
SMQ C1H C1G SINGLE NONE 19
SMQ O1G C1P DOUBLE NONE 20
SMQ C1I C1H SINGLE NONE 21
SMQ C1H C1N SINGLE NONE 22
SMQ C1O O1H SINGLE BEGINWEDGE 23
SMQ C1J C1I SINGLE NONE 24
SMQ C1K C1J SINGLE NONE 25
SMQ C1J C1L DOUBLE NONE 26
SMQ C1L C1M SINGLE NONE 27
SMQ C1M C1N SINGLE NONE 28
SMQ C1N C1O SINGLE NONE 29
SMQ C1O C1P SINGLE NONE 30
SMQ C1P C1Q SINGLE NONE 31
SMQ C1R C1Q SINGLE NONE 32
SMQ C1R C1S DOUBLE NONE 33
SMQ C2B C2A SINGLE NONE 34
SMQ C2A O2A SINGLE NONE 35
SMQ O2A C2E SINGLE NONE 36
SMQ C2B C2C SINGLE NONE 37
SMQ C2D O2B SINGLE BEGINWEDGE 38
SMQ C2G O2B SINGLE NONE 39
SMQ C2C O2D SINGLE BEGINDASH 40
SMQ C2C C2D SINGLE NONE 41
SMQ O2C C2G DOUBLE NONE 42
SMQ C2D C2E SINGLE NONE 43
SMQ O2D C3A SINGLE NONE 44
SMQ C2E C2F SINGLE BEGINDASH 45
SMQ C2G C2H SINGLE NONE 46
SMQ C3B C3A SINGLE ENDUPRIGHT 47
SMQ C3A O3A DOUBLE NONE 48
SMQ C3B C3C DOUBLE NONE 49
SMQ O3B C3J DOUBLE NONE 50
SMQ C3D C3C SINGLE ENDUPRIGHT 51
SMQ C3E C3D DOUBLE NONE 52
SMQ C3F C3E SINGLE ENDUPRIGHT 53
SMQ C3G C3F DOUBLE NONE 54
SMQ C3H C3G SINGLE ENDUPRIGHT 55
SMQ C3I C3H DOUBLE NONE 56
SMQ C3J C3I SINGLE ENDUPRIGHT 57
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
SMQ MurckoScaffold S1 scaffold 'O=C1C=CCC2CC[C@]34Cc5cc([C@H]6CCCCO6)ccc5C(=O)[C@]3(O4)C12' InChI=1S/C23H24O4/c24-18-5-3-4-14-9-10-22-13-16-12-15(19-6-1-2-11-26-19)7-8-17(16)21(25)23(22,27-22)20(14)18/h3,5,7-8,12,14,19-20H,1-2,4,6,9-11,13H2/t14?,19-,20?,22+,23-/m1/s1 WBYIASJEKNFEOE-QFNAUFJYSA-N
SMQ cyclohexane F1 fragment C1CCCCC1 InChI=1S/C6H12/c1-2-4-6-5-3-1/h1-6H2 XDTMQSROBMDMFD-UHFFFAOYSA-N
SMQ phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
SMQ C1A S1 1
SMQ C1B S1 1
SMQ C1C S1 1
SMQ C1D S1 1
SMQ C1E S1 1
SMQ O1E S1 1
SMQ C1F S1 1
SMQ C1G S1 1
SMQ O1G S1 1
SMQ C1H S1 1
SMQ O1H S1 1
SMQ C1I S1 1
SMQ C1J S1 1
SMQ C1L S1 1
SMQ C1M S1 1
SMQ C1N S1 1
SMQ C1O S1 1
SMQ C1P S1 1
SMQ C1Q S1 1
SMQ C1R S1 1
SMQ C1S S1 1
SMQ C2A S1 1
SMQ O2A S1 1
SMQ C2B S1 1
SMQ C2C S1 1
SMQ C2D S1 1
SMQ C2E S1 1
SMQ C1E F1 1
SMQ C1O F1 1
SMQ C1N F1 1
SMQ C1H F1 1
SMQ C1G F1 1
SMQ C1F F1 1
SMQ C1A F2 1
SMQ C1S F2 1
SMQ C1R F2 1
SMQ C1Q F2 1
SMQ C1C F2 1
SMQ C1B F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id SMQ
_pdbe_chem_comp_rdkit_properties.exactmw 722.221
_pdbe_chem_comp_rdkit_properties.amw 722.696
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 15
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 6
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 16
_pdbe_chem_comp_rdkit_properties.NumHBD 6
_pdbe_chem_comp_rdkit_properties.NumHBA 15
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 52
_pdbe_chem_comp_rdkit_properties.NumAtoms 90
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 15
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.432
_pdbe_chem_comp_rdkit_properties.NumRings 6
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 5
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 3
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 10
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 350.204
_pdbe_chem_comp_rdkit_properties.tpsa 246.950
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.652
_pdbe_chem_comp_rdkit_properties.CrippenMR 173.975
_pdbe_chem_comp_rdkit_properties.chi0v 24.624
_pdbe_chem_comp_rdkit_properties.chi1v 13.378
_pdbe_chem_comp_rdkit_properties.chi2v 7.433
_pdbe_chem_comp_rdkit_properties.chi3v 7.433
_pdbe_chem_comp_rdkit_properties.chi4v 5.434
_pdbe_chem_comp_rdkit_properties.chi0n 62.624
_pdbe_chem_comp_rdkit_properties.chi1n 31.828
_pdbe_chem_comp_rdkit_properties.chi2n 7.433
_pdbe_chem_comp_rdkit_properties.chi3n 7.433
_pdbe_chem_comp_rdkit_properties.chi4n 5.434
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -4.770
_pdbe_chem_comp_rdkit_properties.kappa1 12.398
_pdbe_chem_comp_rdkit_properties.kappa2 13.019
_pdbe_chem_comp_rdkit_properties.kappa3 5.381
_pdbe_chem_comp_rdkit_properties.Phi 3.104
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
SMQ UniChem PDBe SMQ
SMQ UniChem ZINC ZINC000098209414
SMQ UniChem PubChem 52948901
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
SMQ O4 12.134 5.787 0.092 ETKDGv3 1
SMQ C1A -1.163 -2.086 -1.043 ETKDGv3 2
SMQ O1A -0.752 -0.978 1.012 ETKDGv3 3
SMQ C1B -1.519 -1.136 -0.147 ETKDGv3 4
SMQ O1B -3.277 0.100 1.895 ETKDGv3 5
SMQ C1C -2.701 -0.246 -0.418 ETKDGv3 6
SMQ O1C -3.744 3.199 1.942 ETKDGv3 7
SMQ C1D -3.150 0.745 0.651 ETKDGv3 8
SMQ O1D -7.558 4.353 -0.628 ETKDGv3 9
SMQ C1E -4.457 1.526 0.357 ETKDGv3 10
SMQ O1E -7.219 1.441 -3.367 ETKDGv3 11
SMQ C1F -4.887 2.605 1.379 ETKDGv3 12
SMQ O1F -5.625 3.355 -2.241 ETKDGv3 13
SMQ C1G -5.755 3.713 0.756 ETKDGv3 14
SMQ O1G -4.623 0.820 -3.230 ETKDGv3 15
SMQ C1H -6.882 3.202 -0.164 ETKDGv3 16
SMQ O1H -5.511 0.605 0.127 ETKDGv3 17
SMQ C1I -7.898 2.340 0.650 ETKDGv3 18
SMQ C1J -8.882 1.589 -0.212 ETKDGv3 19
SMQ C1K -10.171 1.112 0.393 ETKDGv3 20
SMQ C1L -8.592 1.254 -1.475 ETKDGv3 21
SMQ C1M -7.352 1.687 -2.138 ETKDGv3 22
SMQ C1N -6.252 2.425 -1.382 ETKDGv3 23
SMQ C1O -5.142 1.406 -0.964 ETKDGv3 24
SMQ C1P -4.373 0.638 -2.008 ETKDGv3 25
SMQ C1Q -3.297 -0.301 -1.631 ETKDGv3 26
SMQ C1R -2.857 -1.310 -2.623 ETKDGv3 27
SMQ C1S -1.872 -2.161 -2.338 ETKDGv3 28
SMQ C2A 0.018 -3.010 -0.816 ETKDGv3 29
SMQ O2A -0.012 -3.512 0.510 ETKDGv3 30
SMQ C2B 1.336 -2.262 -1.087 ETKDGv3 31
SMQ O2B 3.425 -4.832 0.692 ETKDGv3 32
SMQ C2C 2.528 -3.190 -0.838 ETKDGv3 33
SMQ O2C 3.947 -4.352 2.898 ETKDGv3 34
SMQ C2D 2.406 -3.838 0.554 ETKDGv3 35
SMQ O2D 3.731 -2.425 -0.924 ETKDGv3 36
SMQ C2E 1.005 -4.481 0.706 ETKDGv3 37
SMQ C2F 0.820 -5.087 2.098 ETKDGv3 38
SMQ C2G 4.165 -5.037 1.862 ETKDGv3 39
SMQ C2H 5.194 -6.115 1.895 ETKDGv3 40
SMQ C3A 4.986 -2.972 -1.221 ETKDGv3 41
SMQ O3A 5.097 -4.186 -1.544 ETKDGv3 42
SMQ C3B 6.192 -2.133 -1.171 ETKDGv3 43
SMQ O3B 10.779 7.524 0.732 ETKDGv3 44
SMQ C3C 6.144 -0.843 -0.827 ETKDGv3 45
SMQ C3D 7.368 -0.027 -0.781 ETKDGv3 46
SMQ C3E 7.322 1.262 -0.436 ETKDGv3 47
SMQ C3F 8.546 2.078 -0.390 ETKDGv3 48
SMQ C3G 8.500 3.367 -0.045 ETKDGv3 49
SMQ C3H 9.724 4.184 0.001 ETKDGv3 50
SMQ C3I 9.676 5.474 0.346 ETKDGv3 51
SMQ C3J 10.882 6.313 0.401 ETKDGv3 52
SMQ HO4 12.965 6.365 0.129 ETKDGv3 53
SMQ HO1A -0.866 -0.207 1.655 ETKDGv3 54
SMQ HO1B -3.942 -0.630 1.788 ETKDGv3 55
SMQ HO1C -4.032 3.650 2.778 ETKDGv3 56
SMQ H1D -2.335 1.495 0.735 ETKDGv3 57
SMQ HO1D -8.305 4.068 -1.216 ETKDGv3 58
SMQ H1F -5.452 2.099 2.195 ETKDGv3 59
SMQ HO1F -6.322 3.885 -2.710 ETKDGv3 60
SMQ H1G -6.197 4.321 1.576 ETKDGv3 61
SMQ H1GA -5.097 4.394 0.172 ETKDGv3 62
SMQ H1I -7.404 1.590 1.293 ETKDGv3 63
SMQ H1IA -8.457 3.013 1.336 ETKDGv3 64
SMQ H1K -10.247 1.409 1.460 ETKDGv3 65
SMQ H1KA -11.029 1.553 -0.158 ETKDGv3 66
SMQ H1KB -10.229 0.004 0.335 ETKDGv3 67
SMQ H1L -9.309 0.685 -2.055 ETKDGv3 68
SMQ H1R -3.347 -1.379 -3.586 ETKDGv3 69
SMQ H1S -1.577 -2.894 -3.079 ETKDGv3 70
SMQ H2A -0.067 -3.858 -1.536 ETKDGv3 71
SMQ H2B 1.360 -1.909 -2.141 ETKDGv3 72
SMQ H2BA 1.417 -1.374 -0.421 ETKDGv3 73
SMQ H2C 2.522 -3.979 -1.624 ETKDGv3 74
SMQ H2D 2.531 -3.036 1.316 ETKDGv3 75
SMQ H2E 0.894 -5.314 -0.029 ETKDGv3 76
SMQ H2F -0.214 -5.478 2.201 ETKDGv3 77
SMQ H2FA 0.988 -4.318 2.882 ETKDGv3 78
SMQ H2FB 1.522 -5.933 2.253 ETKDGv3 79
SMQ H2H 5.567 -6.313 0.869 ETKDGv3 80
SMQ H2HA 4.743 -7.043 2.304 ETKDGv3 81
SMQ H2HB 6.048 -5.808 2.535 ETKDGv3 82
SMQ H3B 7.144 -2.589 -1.420 ETKDGv3 83
SMQ H3C 5.195 -0.383 -0.575 ETKDGv3 84
SMQ H3D 8.320 -0.483 -1.032 ETKDGv3 85
SMQ H3E 6.371 1.718 -0.185 ETKDGv3 86
SMQ H3F 9.498 1.622 -0.641 ETKDGv3 87
SMQ H3G 7.548 3.823 0.205 ETKDGv3 88
SMQ H3H 10.674 3.724 -0.249 ETKDGv3 89
SMQ H3I 8.724 5.929 0.596 ETKDGv3 90
#