data_SNL
#
_chem_comp.id SNL
_chem_comp.name SPIRONOLACTONE
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C24 H32 O4 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms
"17-HYDROXY-7ALPHA-MERCAPTO-3-OXO-17ALPHA-PREGN-4-ENE-21- CARBOXYLIC ACID; GAMMA-LACTONE ACETATE"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2005-07-18
_chem_comp.pdbx_modified_date 2020-05-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 416.573
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code SNL
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 2AB2
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
SNL C8 C8 C 0 1 N N N N N N 21.502 49.118 9.332 -3.384 1.525 0.578 C8 SNL 1
SNL C4 C4 C 0 1 N N N N N N 20.644 52.272 11.431 -1.722 -1.486 -0.985 C4 SNL 2
SNL C5 C5 C 0 1 N N S N N N 21.139 50.849 11.059 -2.195 -0.563 0.121 C5 SNL 3
SNL C2 C2 C 0 1 N N R N N N 18.132 51.231 14.376 1.934 -1.608 0.289 C2 SNL 4
SNL C6 C6 C 0 1 N N S N N N 19.915 49.910 11.017 -1.180 0.611 0.200 C6 SNL 5
SNL C1 C1 C 0 1 N N N N N N 17.647 52.669 14.748 2.475 -2.589 -0.737 C1 SNL 6
SNL C3 C3 C 0 1 N N N N N N 20.014 52.286 12.849 -0.370 -2.068 -0.545 C3 SNL 7
SNL C7 C7 C 0 1 N N N N N N 20.358 48.635 10.312 -1.921 1.608 1.098 C7 SNL 8
SNL C9 C9 C 0 1 N N R N N N 21.747 50.655 9.628 -3.521 0.143 -0.089 C9 SNL 9
SNL C10 C10 C 0 1 N N N N N N 22.262 50.361 12.090 -2.217 -1.318 1.451 C10 SNL 10
SNL C11 C11 C 0 1 N N N N N N 19.164 50.791 15.422 1.558 -2.395 1.546 C11 SNL 11
SNL C12 C12 C 0 1 N N N N N N 16.597 52.689 15.910 3.941 -2.932 -0.476 C12 SNL 12
SNL C13 C13 C 0 1 N N N N N N 21.236 51.613 8.501 -3.848 0.304 -1.583 C13 SNL 13
SNL C14 C14 C 0 1 N N N N N N 22.314 52.726 8.587 -5.392 0.224 -1.583 C14 SNL 14
SNL C15 C15 C 0 1 N N N N N N 23.537 52.032 9.062 -5.752 -0.331 -0.221 C15 SNL 15
SNL C16 C16 C 0 1 N N N N N N 16.495 50.595 10.577 2.538 3.180 -0.211 C16 SNL 16
SNL C17 C17 C 0 1 N N N N N N 15.624 50.604 9.375 3.129 4.099 -1.250 C17 SNL 17
SNL C18 C18 C 0 1 N N N N N N 15.469 51.659 15.755 4.722 -1.633 -0.495 C18 SNL 18
SNL C19 C19 C 0 1 N N N N N N 15.773 50.430 14.964 4.190 -0.540 0.327 C19 SNL 19
SNL C20 C20 C 0 1 N N N N N N 16.961 50.201 14.368 2.906 -0.539 0.684 C20 SNL 20
SNL C21 C21 C 0 1 N N N N N N 17.317 48.817 13.878 2.414 0.608 1.548 C21 SNL 21
SNL C22 C22 C 0 1 N N R N N N 18.023 48.844 12.518 1.136 1.176 0.928 C22 SNL 22
SNL C23 C23 C 0 1 N N R N N N 19.248 49.841 12.429 0.112 0.050 0.761 C23 SNL 23
SNL C24 C24 C 0 1 N N S N N N 18.815 51.270 12.910 0.650 -0.971 -0.254 C24 SNL 24
SNL O57 O57 O 0 1 N N N N N N 24.681 52.337 9.018 -6.877 -0.509 0.182 O57 SNL 25
SNL O58 O58 O 0 1 N N N N N N 23.192 50.853 9.635 -4.633 -0.595 0.474 O58 SNL 26
SNL O59 O59 O 0 1 N N N N N N 16.885 51.597 11.116 2.787 3.353 0.963 O59 SNL 27
SNL O60 O60 O 0 1 N N N N N N 14.384 51.828 16.273 5.732 -1.504 -1.154 O60 SNL 28
SNL S61 S61 S 0 1 N N N N N N 16.903 48.945 11.093 1.516 1.893 -0.689 S61 SNL 29
SNL H81 1H8 H 0 1 N N N N N N 22.430 48.504 9.405 -4.084 1.612 1.410 H81 SNL 30
SNL H82 2H8 H 0 1 N N N N N N 21.277 48.908 8.260 -3.569 2.313 -0.152 H82 SNL 31
SNL H41 1H4 H 0 1 N N N N N N 21.456 53.029 11.333 -1.600 -0.924 -1.911 H41 SNL 32
SNL H42 2H4 H 0 1 N N N N N N 19.942 52.677 10.664 -2.443 -2.291 -1.131 H42 SNL 33
SNL H6 H6 H 0 1 N N N N N N 19.054 50.267 10.404 -1.018 1.041 -0.789 H6 SNL 34
SNL H11 1H1 H 0 1 N N N N N N 18.513 53.329 14.986 2.385 -2.150 -1.730 H11 SNL 35
SNL H12 2H1 H 0 1 N N N N N N 17.252 53.198 13.849 1.884 -3.504 -0.699 H12 SNL 36
SNL H31 1H3 H 0 1 N N N N N N 20.769 52.090 13.645 0.015 -2.711 -1.336 H31 SNL 37
SNL H32 2H3 H 0 1 N N N N N N 19.710 53.312 13.162 -0.516 -2.665 0.356 H32 SNL 38
SNL H71 1H7 H 0 1 N N N N N N 19.532 48.076 9.812 -1.865 1.302 2.143 H71 SNL 39
SNL H72 2H7 H 0 1 N N N N N N 20.661 47.811 11.000 -1.522 2.614 0.968 H72 SNL 40
SNL H101 1H10 H 0 0 N N N N N N 22.617 49.338 11.822 -1.229 -1.735 1.648 H101 SNL 41
SNL H102 2H10 H 0 0 N N N N N N 23.104 51.088 12.161 -2.489 -0.633 2.253 H102 SNL 42
SNL H103 3H10 H 0 0 N N N N N N 21.907 50.414 13.145 -2.947 -2.125 1.398 H103 SNL 43
SNL H111 1H11 H 0 0 N N N N N N 19.510 49.764 15.156 2.441 -2.900 1.937 H111 SNL 44
SNL H112 2H11 H 0 0 N N N N N N 20.005 51.515 15.528 1.166 -1.712 2.299 H112 SNL 45
SNL H113 3H11 H 0 0 N N N N N N 18.775 50.858 16.465 0.797 -3.136 1.296 H113 SNL 46
SNL H121 1H12 H 0 0 N N N N N N 17.103 52.568 16.896 4.310 -3.598 -1.256 H121 SNL 47
SNL H122 2H12 H 0 0 N N N N N N 16.175 53.713 16.037 4.041 -3.410 0.499 H122 SNL 48
SNL H131 1H13 H 0 0 N N N N N N 21.093 51.150 7.496 -3.508 1.271 -1.954 H131 SNL 49
SNL H132 2H13 H 0 0 N N N N N N 20.177 51.952 8.593 -3.415 -0.509 -2.166 H132 SNL 50
SNL H141 1H14 H 0 0 N N N N N N 22.455 53.294 7.638 -5.824 1.216 -1.714 H141 SNL 51
SNL H142 2H14 H 0 0 N N N N N N 22.015 53.598 9.213 -5.737 -0.448 -2.369 H142 SNL 52
SNL H171 1H17 H 0 0 N N N N N N 15.262 49.675 8.875 4.088 3.702 -1.582 H171 SNL 53
SNL H172 2H17 H 0 0 N N N N N N 14.727 51.220 9.619 2.450 4.170 -2.100 H172 SNL 54
SNL H173 3H17 H 0 0 N N N N N N 16.134 51.220 8.599 3.275 5.089 -0.818 H173 SNL 55
SNL H19 H19 H 0 1 N N N N N N 15.050 49.612 14.804 4.839 0.265 0.641 H19 SNL 56
SNL H211 1H21 H 0 0 N N N N N N 17.922 48.265 14.634 3.177 1.386 1.592 H211 SNL 57
SNL H212 2H21 H 0 0 N N N N N N 16.419 48.156 13.852 2.203 0.243 2.554 H212 SNL 58
SNL H22 H22 H 0 1 N N N N N N 18.482 47.830 12.448 0.726 1.946 1.581 H22 SNL 59
SNL H23 H23 H 0 1 N N N N N N 20.032 49.432 13.108 -0.078 -0.439 1.717 H23 SNL 60
SNL H24 H24 H 0 1 N N N N N N 18.035 51.635 12.201 0.879 -0.446 -1.182 H24 SNL 61
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
SNL C8 C7 SING N N 1
SNL C8 C9 SING N N 2
SNL C8 H81 SING N N 3
SNL C8 H82 SING N N 4
SNL C4 C5 SING N N 5
SNL C4 C3 SING N N 6
SNL C4 H41 SING N N 7
SNL C4 H42 SING N N 8
SNL C5 C6 SING N N 9
SNL C5 C9 SING N N 10
SNL C5 C10 SING N N 11
SNL C2 C1 SING N N 12
SNL C2 C11 SING N N 13
SNL C2 C20 SING N N 14
SNL C2 C24 SING N N 15
SNL C6 C7 SING N N 16
SNL C6 C23 SING N N 17
SNL C6 H6 SING N N 18
SNL C1 C12 SING N N 19
SNL C1 H11 SING N N 20
SNL C1 H12 SING N N 21
SNL C3 C24 SING N N 22
SNL C3 H31 SING N N 23
SNL C3 H32 SING N N 24
SNL C7 H71 SING N N 25
SNL C7 H72 SING N N 26
SNL C9 C13 SING N N 27
SNL C9 O58 SING N N 28
SNL C10 H101 SING N N 29
SNL C10 H102 SING N N 30
SNL C10 H103 SING N N 31
SNL C11 H111 SING N N 32
SNL C11 H112 SING N N 33
SNL C11 H113 SING N N 34
SNL C12 C18 SING N N 35
SNL C12 H121 SING N N 36
SNL C12 H122 SING N N 37
SNL C13 C14 SING N N 38
SNL C13 H131 SING N N 39
SNL C13 H132 SING N N 40
SNL C14 C15 SING N N 41
SNL C14 H141 SING N N 42
SNL C14 H142 SING N N 43
SNL C15 O57 DOUB N N 44
SNL C15 O58 SING N N 45
SNL C16 C17 SING N N 46
SNL C16 O59 DOUB N N 47
SNL C16 S61 SING N N 48
SNL C17 H171 SING N N 49
SNL C17 H172 SING N N 50
SNL C17 H173 SING N N 51
SNL C18 C19 SING N N 52
SNL C18 O60 DOUB N N 53
SNL C19 C20 DOUB N N 54
SNL C19 H19 SING N N 55
SNL C20 C21 SING N N 56
SNL C21 C22 SING N N 57
SNL C21 H211 SING N N 58
SNL C21 H212 SING N N 59
SNL C22 C23 SING N N 60
SNL C22 S61 SING N N 61
SNL C22 H22 SING N N 62
SNL C23 C24 SING N N 63
SNL C23 H23 SING N N 64
SNL C24 H24 SING N N 65
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
SNL SMILES ACDLabs 10.04 O=C5OC4(C3(C(C2C(SC(=O)C)CC1=CC(=O)CCC1(C)C2CC3)CC4)C)CC5
SNL SMILES_CANONICAL CACTVS 3.341 CC(=O)S[C@@H]1CC2=CC(=O)CC[C@]2(C)[C@H]3CC[C@@]4(C)[C@@H](CC[C@@]45CCC(=O)O5)[C@H]13
SNL SMILES CACTVS 3.341 CC(=O)S[CH]1CC2=CC(=O)CC[C]2(C)[CH]3CC[C]4(C)[CH](CC[C]45CCC(=O)O5)[CH]13
SNL SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 CC(=O)S[C@@H]1CC2=CC(=O)CC[C@@]2([C@@H]3[C@@H]1[C@@H]4CC[C@]5([C@]4(CC3)C)CCC(=O)O5)C
SNL SMILES "OpenEye OEToolkits" 1.5.0 CC(=O)SC1CC2=CC(=O)CCC2(C3C1C4CCC5(C4(CC3)C)CCC(=O)O5)C
SNL InChI InChI 1.03 InChI=1S/C24H32O4S/c1-14(25)29-19-13-15-12-16(26)4-8-22(15,2)17-5-9-23(3)18(21(17)19)6-10-24(23)11-7-20(27)28-24/h12,17-19,21H,4-11,13H2,1-3H3/t17-,18-,19+,21+,22-,23-,24+/m0/s1
SNL InChIKey InChI 1.03 LXMSZDCAJNLERA-ZHYRCANASA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
SNL "SYSTEMATIC NAME" ACDLabs 10.04 "S-[(7R,8R,9S,10R,13S,14S,17R)-10,13-dimethyl-3,5'-dioxo-1,2,3,4',5',6,7,8,9,10,11,12,13,14,15,16-hexadecahydro-3'H-spiro[cyclopenta[a]phenanthrene-17,2'-furan]-7-yl] ethanethioate"
SNL "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "S-[(7R,8R,9S,10R,13S,14S,17R)-10,13-dimethyl-3,5'-dioxo-spiro[2,6,7,8,9,11,12,14,15,16-decahydro-1H-cyclopenta[a]phenanthrene-17,2'-oxolane]-7-yl] ethanethioate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
SNL 'Create component' 2005-07-18 RCSB
SNL 'Modify descriptor' 2011-06-04 RCSB
SNL 'Modify synonyms' 2020-05-27 PDBE
#
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1 SNL "17-HYDROXY-7ALPHA-MERCAPTO-3-OXO-17ALPHA-PREGN-4-ENE-21- CARBOXYLIC ACID" ? ?
2 SNL "GAMMA-LACTONE ACETATE" ? ?
#
_pdbe_chem_comp_drugbank_details.comp_id SNL
_pdbe_chem_comp_drugbank_details.drugbank_id DB00421
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name Spironolactone
_pdbe_chem_comp_drugbank_details.description
'Spironolactone is a potassium-sparing diuretic. It binds to mineralocorticoid receptors and functions as aldosterone antagonists.[A178192] It promotes sodium and water excretion and potassium retention.[A11837] Spironolactone was originally developed purely for this ability before other pharmacodynamic properties of the drug were discovered.[A11837, A178246] It is indicated to treat several conditions, including heart failure, edema, hyperaldosteronism, and hypertension.[L44602] Off-label uses of spironolactone include hirsutism, female pattern hair loss, and adult acne vulgaris.[A178135, A261025]   Spironolactone was developed in 1957, marketed in 1959, and approved by the FDA on January 21, 1960.[A178243, L6187]'
_pdbe_chem_comp_drugbank_details.cas_number 52-01-7
_pdbe_chem_comp_drugbank_details.mechanism_of_action
'Aldosterone is a key hormone in the renin-angiotensin-aldosterone system. By binding to the mineralocorticoid receptor at the distal tubules and collecting duct, it causes sodium reabsorption and potassium secretion, increases vascular stiffness and remodelling, and activates pro-inflammatory pathways.[A178192, A261025]  Spironolactone and its active metabolites are aldosterone antagonists that produce a potassium-sparing diuretic effect. They competitively bind to receptors at the aldosterone-dependent sodium-potassium exchange site in the distal convoluted renal tubule. Spironolactone causes increased amounts of sodium and water to be excreted while potassium is retained. Spironolactone acts both as a diuretic and as an antihypertensive drug by this mechanism. It may be given alone or with other diuretic agents that act more proximally in the renal tubule.[A178192, L44602]'
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
SNL Aldactone ChEMBL Tradename
SNL Spironolactone ChEMBL Tradename
SNL Spironolactone ChEMBL 'United States Accepted Names'
SNL '17-HYDROXY-7ALPHA-MERCAPTO-3-OXO-17ALPHA-PREGN-4-ENE-21- CARBOXYLIC ACID' wwPDB ?
SNL 'GAMMA-LACTONE ACETATE' wwPDB ?
SNL Spironolactone DrugBank ?
SNL Spironolactonum DrugBank ?
SNL Spironolattone DrugBank ?
SNL Osyrol DrugBank 'International brand'
SNL Spiresis DrugBank 'International brand'
SNL Spiretic DrugBank 'International brand'
SNL Spiroctan DrugBank 'International brand'
SNL Uractone DrugBank 'International brand'
SNL Verospiron DrugBank 'International brand'
SNL Xenalon DrugBank 'International brand'
#
_pdbe_chem_comp_drugbank_classification.comp_id SNL
_pdbe_chem_comp_drugbank_classification.drugbank_id DB00421
_pdbe_chem_comp_drugbank_classification.parent 'Spironolactones and derivatives'
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Steroids and steroid derivatives'
_pdbe_chem_comp_drugbank_classification.superclass 'Lipids and lipid-like molecules'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as spironolactones and derivatives. These are steroid lactones with a structure based on the spironolactone skeleton.'
#
loop_
_pdbe_chem_comp_drugbank_targets.comp_id
_pdbe_chem_comp_drugbank_targets.drugbank_id
_pdbe_chem_comp_drugbank_targets.name
_pdbe_chem_comp_drugbank_targets.organism
_pdbe_chem_comp_drugbank_targets.uniprot_id
_pdbe_chem_comp_drugbank_targets.pharmacologically_active
_pdbe_chem_comp_drugbank_targets.ordinal
SNL DB00421 'Mineralocorticoid receptor' Humans P08235 yes 1
SNL DB00421 'Glucocorticoid receptor' Humans P04150 unknown 2
SNL DB00421 'Androgen receptor' Humans P10275 unknown 3
SNL DB00421 'Progesterone receptor' Humans P06401 unknown 4
SNL DB00421 'Estrogen receptor' Humans P03372 unknown 5
SNL DB00421 'Estrogen receptor beta' Humans Q92731 unknown 6
SNL DB00421 'Nuclear receptor subfamily 1 group I member 2' Humans O75469 unknown 7
SNL DB00421 'Voltage-dependent L-type calcium channel subunit alpha-1C' Humans Q13936 unknown 8
SNL DB00421 'Voltage-dependent L-type calcium channel subunit alpha-1D' Humans Q01668 unknown 9
SNL DB00421 'Voltage-dependent L-type calcium channel subunit alpha-1F' Humans O60840 unknown 10
SNL DB00421 'Voltage-dependent L-type calcium channel subunit alpha-1S' Humans Q13698 unknown 11
SNL DB00421 'Voltage-dependent L-type calcium channel subunit beta-1' Humans Q02641 unknown 12
SNL DB00421 'Voltage-dependent L-type calcium channel subunit beta-2' Humans Q08289 unknown 13
SNL DB00421 'Voltage-dependent L-type calcium channel subunit beta-3' Humans P54284 unknown 14
SNL DB00421 'Voltage-dependent L-type calcium channel subunit beta-4' Humans O00305 unknown 15
SNL DB00421 'Voltage-dependent P/Q-type calcium channel subunit alpha-1A' Humans O00555 unknown 16
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
SNL C8 C 7.755 -4.421 1
SNL C4 C 10.851 -2.059 2
SNL C5 C 9.552 -2.809 3
SNL C2 C 9.576 1.753 4
SNL C6 C 8.253 -2.059 5
SNL C1 C 11.004 2.534 6
SNL C3 C 10.851 -0.559 7
SNL C7 C 7.148 -3.060 8
SNL C9 C 9.238 -4.267 9
SNL C10 C 11.030 -3.070 10
SNL C11 C 10.870 0.993 11
SNL C12 C 11.029 4.161 12
SNL C13 C 8.924 -5.734 13
SNL C14 C 10.222 -6.486 14
SNL C15 C 11.338 -5.484 15
SNL C16 C 4.290 0.171 16
SNL C17 C 4.273 1.671 17
SNL C18 C 9.626 4.986 18
SNL C19 C 8.217 4.172 19
SNL C20 C 8.229 2.545 20
SNL C21 C 6.876 1.763 21
SNL C22 C 6.888 0.201 22
SNL C23 C 8.253 -0.559 23
SNL C24 C 9.552 0.191 24
SNL O57 O 12.805 -5.798 25
SNL O58 O 10.730 -4.113 26
SNL O59 O 3.000 -0.594 27
SNL O60 O 9.632 6.486 28
SNL S61 S 5.598 -0.564 29
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
SNL C8 C7 SINGLE NONE 1
SNL C9 C8 SINGLE BEGINWEDGE 2
SNL C4 C5 SINGLE NONE 3
SNL C4 C3 SINGLE NONE 4
SNL C5 C6 SINGLE NONE 5
SNL C5 C9 SINGLE NONE 6
SNL C5 C10 SINGLE BEGINWEDGE 7
SNL C2 C1 SINGLE NONE 8
SNL C2 C11 SINGLE BEGINWEDGE 9
SNL C2 C20 SINGLE NONE 10
SNL C2 C24 SINGLE NONE 11
SNL C6 C7 SINGLE NONE 12
SNL C6 C23 SINGLE NONE 13
SNL C1 C12 SINGLE NONE 14
SNL C3 C24 SINGLE NONE 15
SNL C9 C13 SINGLE NONE 16
SNL C9 O58 SINGLE NONE 17
SNL C12 C18 SINGLE NONE 18
SNL C13 C14 SINGLE NONE 19
SNL C14 C15 SINGLE NONE 20
SNL C15 O57 DOUBLE NONE 21
SNL C15 O58 SINGLE NONE 22
SNL C16 C17 SINGLE NONE 23
SNL C16 O59 DOUBLE NONE 24
SNL C16 S61 SINGLE NONE 25
SNL C18 C19 SINGLE NONE 26
SNL C18 O60 DOUBLE NONE 27
SNL C19 C20 DOUBLE NONE 28
SNL C20 C21 SINGLE NONE 29
SNL C21 C22 SINGLE NONE 30
SNL C22 C23 SINGLE NONE 31
SNL C22 S61 SINGLE BEGINDASH 32
SNL C23 C24 SINGLE NONE 33
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
SNL MurckoScaffold S1 scaffold 'O=C1C=C2CC[C@@H]3[C@H](CCC4[C@H]3CC[C@@]43CCC(=O)O3)C2CC1' InChI=1S/C20H26O3/c21-13-2-4-14-12(11-13)1-3-16-15(14)5-6-18-17(16)7-9-20(18)10-8-19(22)23-20/h11,14-18H,1-10H2/t14?,15-,16-,17+,18?,20-/m1/s1 FTWZQYBELWYJGN-ZCJJJAPASA-N
SNL cyclohexane F1 fragment C1CCCCC1 InChI=1S/C6H12/c1-2-4-6-5-3-1/h1-6H2 XDTMQSROBMDMFD-UHFFFAOYSA-N
SNL cyclopentane F2 fragment C1CCCC1 InChI=1S/C5H10/c1-2-4-5-3-1/h1-5H2 RGSFGYAAUTVSQA-UHFFFAOYSA-N
SNL steroid-like F3 fragment C1~C~C~C2~C(~C~1)~C~C~C1~C3~C~C~C~C~3~C~C~C~2~1 ? ?
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
SNL C8 S1 1
SNL C4 S1 1
SNL C5 S1 1
SNL C2 S1 1
SNL C6 S1 1
SNL C1 S1 1
SNL C3 S1 1
SNL C7 S1 1
SNL C9 S1 1
SNL C12 S1 1
SNL C13 S1 1
SNL C14 S1 1
SNL C15 S1 1
SNL C18 S1 1
SNL C19 S1 1
SNL C20 S1 1
SNL C21 S1 1
SNL C22 S1 1
SNL C23 S1 1
SNL C24 S1 1
SNL O57 S1 1
SNL O58 S1 1
SNL O60 S1 1
SNL C4 F1 1
SNL C5 F1 1
SNL C6 F1 1
SNL C23 F1 1
SNL C24 F1 1
SNL C3 F1 1
SNL C2 F1 2
SNL C20 F1 2
SNL C21 F1 2
SNL C22 F1 2
SNL C23 F1 2
SNL C24 F1 2
SNL C8 F2 1
SNL C7 F2 1
SNL C6 F2 1
SNL C5 F2 1
SNL C9 F2 1
SNL C12 F3 1
SNL C18 F3 1
SNL C19 F3 1
SNL C20 F3 1
SNL C2 F3 1
SNL C1 F3 1
SNL C24 F3 1
SNL C23 F3 1
SNL C22 F3 1
SNL C21 F3 1
SNL C6 F3 1
SNL C5 F3 1
SNL C4 F3 1
SNL C3 F3 1
SNL C9 F3 1
SNL C8 F3 1
SNL C7 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id SNL
_pdbe_chem_comp_rdkit_properties.exactmw 416.202
_pdbe_chem_comp_rdkit_properties.amw 416.583
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 0
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 4
_pdbe_chem_comp_rdkit_properties.NumHBD 0
_pdbe_chem_comp_rdkit_properties.NumHBA 5
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 29
_pdbe_chem_comp_rdkit_properties.NumAtoms 61
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 5
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.792
_pdbe_chem_comp_rdkit_properties.NumRings 5
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 5
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 4
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 1
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 7
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 222.094
_pdbe_chem_comp_rdkit_properties.tpsa 60.440
_pdbe_chem_comp_rdkit_properties.CrippenClogP 4.852
_pdbe_chem_comp_rdkit_properties.CrippenMR 112.210
_pdbe_chem_comp_rdkit_properties.chi0v 14.858
_pdbe_chem_comp_rdkit_properties.chi1v 8.745
_pdbe_chem_comp_rdkit_properties.chi2v 5.436
_pdbe_chem_comp_rdkit_properties.chi3v 5.436
_pdbe_chem_comp_rdkit_properties.chi4v 4.077
_pdbe_chem_comp_rdkit_properties.chi0n 46.041
_pdbe_chem_comp_rdkit_properties.chi1n 23.929
_pdbe_chem_comp_rdkit_properties.chi2n 4.740
_pdbe_chem_comp_rdkit_properties.chi3n 4.740
_pdbe_chem_comp_rdkit_properties.chi4n 3.432
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.100
_pdbe_chem_comp_rdkit_properties.kappa1 4.944
_pdbe_chem_comp_rdkit_properties.kappa2 6.448
_pdbe_chem_comp_rdkit_properties.kappa3 2.679
_pdbe_chem_comp_rdkit_properties.Phi 1.099
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
SNL UniChem ChEMBL CHEMBL1393
SNL UniChem DrugBank DB00421
SNL UniChem PDBe SNL
SNL UniChem 'Guide to Pharmacology' 2875
SNL UniChem 'PubChem DOTF' 22395181
SNL UniChem 'KEGG LIGAND' C07310
SNL UniChem ChEBI 9241
SNL UniChem NIH SAM002264648
SNL UniChem ZINC ZINC000003861599
SNL UniChem fdasrs 27O7W4T232
SNL UniChem PharmGKB PA451483
SNL UniChem HMDB HMDB0014565
SNL UniChem Selleck spironolactone
SNL UniChem LINCS LSM-4018
SNL UniChem Nikkaji J4.474A
SNL UniChem DrugCentral 2475
SNL UniChem ChemicalBook CB9743463
SNL UniChem DailyMed SPIRONOLACTONE
SNL UniChem ClinicalTrials ALDACTONE
SNL UniChem ClinicalTrials SC-9420
SNL UniChem ClinicalTrials SPIRONOLACTONE
SNL UniChem rxnorm ALDACTONE
SNL UniChem rxnorm CAROSPIR
SNL UniChem rxnorm SPIRONOLACTONE
SNL UniChem MedChemExpress HY-B0561
SNL UniChem 'Probes And Drugs' PD002860
SNL UniChem 'EPA CompTox Dashboard' DTXSID6034186
SNL UniChem eMolecules 29702936
SNL UniChem eMolecules 31590111
SNL UniChem eMolecules 594297
SNL UniChem SureChEMBL SCHEMBL20939
SNL UniChem 'PubChem TPHARMA' 14782265
SNL UniChem 'PubChem TPHARMA' 14855731
SNL UniChem PubChem 5833
SNL UniChem Mcule MCULE-4394091100
SNL UniChem ACTor 496916-40-6
SNL UniChem BindingDb 50228080
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
SNL C8 3.164 2.063 0.076 ETKDGv3 1
SNL C4 1.845 -1.573 -0.051 ETKDGv3 2
SNL C5 2.209 -0.123 -0.469 ETKDGv3 3
SNL C2 -2.072 -1.402 -0.930 ETKDGv3 4
SNL C6 1.083 0.808 0.000 ETKDGv3 5
SNL C1 -2.570 -2.811 -0.461 ETKDGv3 6
SNL C3 0.475 -2.007 -0.626 ETKDGv3 7
SNL C7 1.650 2.216 -0.163 ETKDGv3 8
SNL C9 3.445 0.542 0.222 ETKDGv3 9
SNL C10 2.433 -0.090 -2.021 ETKDGv3 10
SNL C11 -2.011 -1.464 -2.481 ETKDGv3 11
SNL C12 -3.052 -2.834 0.987 ETKDGv3 12
SNL C13 3.682 0.135 1.714 ETKDGv3 13
SNL C14 4.780 -0.932 1.676 ETKDGv3 14
SNL C15 5.390 -0.692 0.353 ETKDGv3 15
SNL C16 -2.164 3.345 1.562 ETKDGv3 16
SNL C17 -3.628 3.642 1.610 ETKDGv3 17
SNL C18 -4.098 -1.784 1.174 ETKDGv3 18
SNL C19 -3.999 -0.515 0.443 ETKDGv3 19
SNL C20 -3.068 -0.312 -0.509 ETKDGv3 20
SNL C21 -2.736 1.108 -0.893 ETKDGv3 21
SNL C22 -1.392 1.502 -0.253 ETKDGv3 22
SNL C23 -0.281 0.485 -0.653 ETKDGv3 23
SNL C24 -0.677 -1.002 -0.305 ETKDGv3 24
SNL O57 6.461 -1.224 -0.038 ETKDGv3 25
SNL O58 4.655 0.174 -0.427 ETKDGv3 26
SNL O59 -1.359 4.262 1.535 ETKDGv3 27
SNL O60 -5.019 -1.954 2.016 ETKDGv3 28
SNL S61 -1.572 1.648 1.578 ETKDGv3 29
SNL H81 3.475 2.651 0.966 ETKDGv3 30
SNL H82 3.717 2.473 -0.797 ETKDGv3 31
SNL H41 1.778 -1.680 1.048 ETKDGv3 32
SNL H42 2.632 -2.276 -0.400 ETKDGv3 33
SNL H6 0.954 0.657 1.097 ETKDGv3 34
SNL H11 -1.801 -3.594 -0.610 ETKDGv3 35
SNL H12 -3.434 -3.123 -1.093 ETKDGv3 36
SNL H31 0.564 -2.174 -1.717 ETKDGv3 37
SNL H32 0.248 -2.993 -0.174 ETKDGv3 38
SNL H71 1.199 2.913 0.577 ETKDGv3 39
SNL H72 1.455 2.601 -1.188 ETKDGv3 40
SNL H101 3.259 -0.778 -2.301 ETKDGv3 41
SNL H102 2.706 0.922 -2.383 ETKDGv3 42
SNL H103 1.554 -0.413 -2.607 ETKDGv3 43
SNL H111 -1.551 -0.570 -2.941 ETKDGv3 44
SNL H112 -3.036 -1.557 -2.900 ETKDGv3 45
SNL H113 -1.435 -2.349 -2.822 ETKDGv3 46
SNL H121 -3.478 -3.835 1.215 ETKDGv3 47
SNL H122 -2.209 -2.650 1.684 ETKDGv3 48
SNL H131 2.780 -0.207 2.256 ETKDGv3 49
SNL H132 4.085 0.995 2.293 ETKDGv3 50
SNL H141 5.519 -0.792 2.494 ETKDGv3 51
SNL H142 4.342 -1.952 1.711 ETKDGv3 52
SNL H171 -3.852 4.275 2.494 ETKDGv3 53
SNL H172 -4.214 2.702 1.687 ETKDGv3 54
SNL H173 -3.929 4.181 0.687 ETKDGv3 55
SNL H19 -4.644 0.298 0.756 ETKDGv3 56
SNL H211 -2.663 1.196 -1.997 ETKDGv3 57
SNL H212 -3.531 1.820 -0.587 ETKDGv3 58
SNL H22 -1.104 2.495 -0.663 ETKDGv3 59
SNL H23 -0.161 0.595 -1.746 ETKDGv3 60
SNL H24 -0.798 -1.039 0.800 ETKDGv3 61
#