data_SPO
#
_chem_comp.id SPO
_chem_comp.name SPHEROIDENE
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C41 H60 O"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 568.914
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code SPO
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1PCR
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
SPO CM1 CM1 C 0 1 N N N N N N 42.252 84.730 55.331 -3.010 -0.859 14.783 CM1 SPO 1
SPO O1 O1 O 0 1 N N N N N N 43.577 85.348 55.760 -2.938 0.100 13.727 O1 SPO 2
SPO C1 C1 C 0 1 N N N N N N 44.482 85.873 54.637 -3.841 -0.335 12.710 C1 SPO 3
SPO C2 C2 C 0 1 N N N N N N 45.918 85.957 55.152 -3.386 -1.693 12.170 C2 SPO 4
SPO C3 C3 C 0 1 N N N N N N 44.408 84.915 53.453 -5.247 -0.466 13.299 C3 SPO 5
SPO C4 C4 C 0 1 N N N N N N 44.050 87.267 54.233 -3.859 0.686 11.571 C4 SPO 6
SPO C5 C5 C 0 1 N N N N N N 42.826 87.289 53.463 -2.474 0.815 10.991 C5 SPO 7
SPO C6 C6 C 0 1 N N N N N N 42.711 88.212 52.275 -2.260 0.532 9.702 C6 SPO 8
SPO C7 C7 C 0 1 N N N N N N 41.492 88.787 51.956 -0.958 0.654 9.156 C7 SPO 9
SPO C8 C8 C 0 1 N N N N N N 40.278 88.676 52.895 0.185 1.101 10.029 C8 SPO 10
SPO C9 C9 C 0 1 N N N N N N 41.492 89.605 50.834 -0.741 0.367 7.845 C9 SPO 11
SPO C10 C10 C 0 1 N N N N N N 40.198 90.262 50.310 0.568 0.364 7.334 C10 SPO 12
SPO C11 C11 C 0 1 N N N N N N 40.244 90.955 48.951 0.779 0.180 5.998 C11 SPO 13
SPO C12 C12 C 0 1 N N N N N N 39.072 91.373 48.346 2.084 0.178 5.488 C12 SPO 14
SPO C13 C13 C 0 1 N N N N N N 37.687 91.032 49.005 3.256 0.377 6.415 C13 SPO 15
SPO C14 C14 C 0 1 N N N N N N 39.224 92.026 47.103 2.297 -0.006 4.140 C14 SPO 16
SPO C15 C15 C 0 1 N N N N N N 37.983 92.586 46.317 3.603 -0.069 3.640 C15 SPO 17
SPO C16 C16 C 0 1 N N N N N N 38.043 93.466 44.999 3.816 -0.150 2.281 C16 SPO 18
SPO C17 C17 C 0 1 N N N N N N 36.793 93.847 44.477 5.122 -0.212 1.780 C17 SPO 19
SPO C18 C18 C 0 1 N N N N N N 35.518 93.663 45.304 6.294 -0.191 2.727 C18 SPO 20
SPO C19 C19 C 0 1 N N N N N N 36.698 94.602 43.316 5.335 -0.294 0.421 C19 SPO 21
SPO C20 C20 C 0 1 N N N N N N 37.843 95.029 42.618 4.247 -0.314 -0.458 C20 SPO 22
SPO C21 C21 C 0 1 N N N N N N 37.764 96.188 41.650 4.460 -0.395 -1.816 C21 SPO 23
SPO C22 C22 C 0 1 N N N N N N 39.053 96.847 41.389 3.370 -0.415 -2.697 C22 SPO 24
SPO C23 C23 C 0 1 N N N N N N 39.505 97.179 40.129 3.582 -0.495 -4.043 C23 SPO 25
SPO C24 C24 C 0 1 N N N N N N 38.513 97.679 39.063 4.987 -0.563 -4.582 C24 SPO 26
SPO C25 C25 C 0 1 N N N N N N 40.822 97.637 40.163 2.488 -0.516 -4.926 C25 SPO 27
SPO C26 C26 C 0 1 N N N N N N 41.595 97.936 38.939 2.699 -0.488 -6.268 C26 SPO 28
SPO C27 C27 C 0 1 N N N N N N 43.075 98.059 39.046 1.599 -0.385 -7.156 C27 SPO 29
SPO C28 C28 C 0 1 N N N N N N 43.792 98.480 37.941 1.810 -0.258 -8.470 C28 SPO 30
SPO C29 C29 C 0 1 N N N N N N 43.212 98.520 36.510 3.210 -0.071 -8.994 C29 SPO 31
SPO C30 C30 C 0 1 N N N N N N 45.310 98.711 37.987 0.647 -0.303 -9.428 C30 SPO 32
SPO C31 C31 C 0 1 N N N N N N 45.650 100.011 38.684 0.105 1.111 -9.638 C31 SPO 33
SPO C32 C32 C 0 1 N N N N N N 46.910 100.497 38.312 -1.057 1.066 -10.596 C32 SPO 34
SPO C33 C33 C 0 1 N N N N N N 47.968 100.967 39.084 -2.193 1.635 -10.275 C33 SPO 35
SPO C34 C34 C 0 1 N N N N N N 47.801 101.438 40.527 -2.283 2.492 -9.038 C34 SPO 36
SPO C35 C35 C 0 1 N N N N N N 49.301 101.468 38.441 -3.409 1.432 -11.141 C35 SPO 37
SPO C36 C36 C 0 1 N N N N N N 50.566 100.708 38.877 -4.181 0.203 -10.656 C36 SPO 38
SPO C37 C37 C 0 1 N N N N N N 51.704 100.894 37.906 -5.397 0.000 -11.523 C37 SPO 39
SPO C38 C38 C 0 1 N N N N N N 51.835 100.534 36.560 -5.505 -1.079 -12.256 C38 SPO 40
SPO C39 C39 C 0 1 N N N N N N 52.418 99.196 36.048 -6.798 -1.377 -12.972 C39 SPO 41
SPO C40 C40 C 0 1 N N N N N N 51.297 101.386 35.399 -4.338 -2.023 -12.385 C40 SPO 42
SPO HM11 1HM1 H 0 0 N N N N N N 41.594 84.348 56.146 -2.671 -1.828 14.417 HM11 SPO 43
SPO HM12 2HM1 H 0 0 N N N N N N 41.686 85.455 54.700 -2.374 -0.540 15.609 HM12 SPO 44
SPO HM13 3HM1 H 0 0 N N N N N N 42.438 83.918 54.589 -4.040 -0.942 15.129 HM13 SPO 45
SPO H21A 1H2 H 0 0 N N N N N N 46.575 86.338 54.336 -2.321 -1.653 11.940 H21A SPO 46
SPO H22A 2H2 H 0 0 N N N N N N 46.000 86.565 56.082 -3.567 -2.461 12.921 H22A SPO 47
SPO H23 3H2 H 0 1 N N N N N N 46.277 84.986 55.567 -3.945 -1.930 11.265 H23 SPO 48
SPO H31 1H3 H 0 1 N N N N N N 45.065 85.296 52.637 -5.514 0.457 13.812 H31 SPO 49
SPO H32A 2H3 H 0 0 N N N N N N 44.651 83.865 53.739 -5.961 -0.655 12.497 H32A SPO 50
SPO H33 3H3 H 0 1 N N N N N N 43.361 84.743 53.109 -5.269 -1.294 14.007 H33 SPO 51
SPO H41 1H4 H 0 1 N N N N N N 43.967 87.929 55.126 -4.548 0.353 10.795 H41 SPO 52
SPO H42 2H4 H 0 1 N N N N N N 44.869 87.792 53.688 -4.183 1.653 11.955 H42 SPO 53
SPO H5 H5 H 0 1 N N N N N N 42.004 86.621 53.772 -1.654 1.135 11.616 H5 SPO 54
SPO H6 H6 H 0 1 N N N N N N 43.552 88.477 51.612 -3.080 0.212 9.076 H6 SPO 55
SPO H81 1H8 H 0 1 N N N N N N 39.296 89.138 52.638 0.679 0.228 10.457 H81 SPO 56
SPO H82 2H8 H 0 1 N N N N N N 40.102 87.594 53.101 0.900 1.666 9.430 H82 SPO 57
SPO H83 3H8 H 0 1 N N N N N N 40.584 89.056 53.897 -0.194 1.733 10.831 H83 SPO 58
SPO H9 H9 H 0 1 N N N N N N 42.486 89.728 50.374 -1.574 0.141 7.197 H9 SPO 59
SPO H10 H10 H 0 1 N N N N N N 39.262 90.236 50.893 1.407 0.507 7.998 H10 SPO 60
SPO H11 H11 H 0 1 N N N N N N 41.165 91.162 48.380 -0.060 0.038 5.334 H11 SPO 61
SPO H131 1H13 H 0 0 N N N N N N 36.742 91.368 48.517 3.460 1.443 6.518 H131 SPO 62
SPO H132 2H13 H 0 0 N N N N N N 37.631 89.929 49.159 3.021 -0.043 7.393 H132 SPO 63
SPO H133 3H13 H 0 0 N N N N N N 37.694 91.403 50.056 4.133 -0.123 6.005 H133 SPO 64
SPO H14 H14 H 0 1 N N N N N N 40.269 92.095 46.759 1.456 -0.103 3.469 H14 SPO 65
SPO H15 H15 H 0 1 N N N N N N 36.987 92.341 46.724 4.443 -0.053 4.318 H15 SPO 66
SPO H16 H16 H 0 1 N N N N N N 38.939 93.807 44.454 2.976 -0.166 1.602 H16 SPO 67
SPO H181 1H18 H 0 0 N N N N N N 34.527 93.964 44.890 7.222 -0.247 2.158 H181 SPO 68
SPO H182 2H18 H 0 0 N N N N N N 35.455 92.594 45.616 6.277 0.733 3.305 H182 SPO 69
SPO H183 3H18 H 0 0 N N N N N N 35.659 94.176 46.283 6.230 -1.043 3.404 H183 SPO 70
SPO H19 H19 H 0 1 N N N N N N 35.695 94.867 42.941 6.343 -0.342 0.035 H19 SPO 71
SPO H20 H20 H 0 1 N N N N N N 38.773 94.472 42.823 3.239 -0.266 -0.071 H20 SPO 72
SPO H21 H21 H 0 1 N N N N N N 36.832 96.528 41.168 5.468 -0.443 -2.202 H21 SPO 73
SPO H22 H22 H 0 1 N N N N N N 39.740 97.115 42.209 2.363 -0.367 -2.310 H22 SPO 74
SPO H241 1H24 H 0 0 N N N N N N 38.878 97.947 38.044 4.961 -0.529 -5.671 H241 SPO 75
SPO H242 2H24 H 0 0 N N N N N N 37.698 96.925 38.958 5.561 0.284 -4.206 H242 SPO 76
SPO H243 3H24 H 0 0 N N N N N N 37.957 98.551 39.479 5.457 -1.492 -4.258 H243 SPO 77
SPO H25 H25 H 0 1 N N N N N N 41.256 97.764 41.168 1.481 -0.553 -4.538 H25 SPO 78
SPO H26 H26 H 0 1 N N N N N N 41.081 98.063 37.971 3.704 -0.544 -6.659 H26 SPO 79
SPO H27 H27 H 0 1 N N N N N N 43.650 97.834 39.959 0.590 -0.408 -6.771 H27 SPO 80
SPO H291 1H29 H 0 0 N N N N N N 43.790 98.859 35.619 3.902 0.018 -8.156 H291 SPO 81
SPO H292 2H29 H 0 0 N N N N N N 42.824 97.499 36.282 3.488 -0.931 -9.604 H292 SPO 82
SPO H293 3H29 H 0 0 N N N N N N 42.279 99.129 36.549 3.254 0.833 -9.600 H293 SPO 83
SPO H301 1H30 H 0 0 N N N N N N 45.840 97.847 38.451 0.978 -0.711 -10.383 H301 SPO 84
SPO H302 2H30 H 0 0 N N N N N N 45.761 98.663 36.968 -0.138 -0.936 -9.016 H302 SPO 85
SPO H311 1H31 H 0 0 N N N N N N 44.857 100.777 38.517 -0.226 1.519 -8.683 H311 SPO 86
SPO H312 2H31 H 0 0 N N N N N N 45.568 99.908 39.791 0.891 1.744 -10.050 H312 SPO 87
SPO H32 H32 H 0 1 N N N N N N 47.101 100.512 37.225 -0.954 0.565 -11.547 H32 SPO 88
SPO H341 1H34 H 0 0 N N N N N N 48.648 101.814 41.145 -1.291 2.602 -8.600 H341 SPO 89
SPO H342 2H34 H 0 0 N N N N N N 47.010 102.224 40.531 -2.673 3.474 -9.305 H342 SPO 90
SPO H343 3H34 H 0 0 N N N N N N 47.317 100.609 41.094 -2.949 2.020 -8.317 H343 SPO 91
SPO H351 1H35 H 0 0 N N N N N N 49.215 101.464 37.329 -4.050 2.311 -11.080 H351 SPO 92
SPO H352 2H35 H 0 0 N N N N N N 49.428 102.560 38.624 -3.097 1.280 -12.175 H352 SPO 93
SPO H361 1H36 H 0 0 N N N N N N 50.869 100.989 39.912 -3.540 -0.676 -10.718 H361 SPO 94
SPO H362 2H36 H 0 0 N N N N N N 50.350 99.626 39.043 -4.492 0.354 -9.623 H362 SPO 95
SPO H37 H37 H 0 1 N N N N N N 52.625 101.393 38.249 -6.179 0.744 -11.538 H37 SPO 96
SPO H391 1H39 H 0 0 N N N N N N 52.522 98.909 34.975 -6.699 -2.310 -13.527 H391 SPO 97
SPO H392 2H39 H 0 0 N N N N N N 53.428 99.091 36.506 -7.603 -1.472 -12.243 H392 SPO 98
SPO H393 3H39 H 0 0 N N N N N N 51.834 98.383 36.541 -7.027 -0.566 -13.662 H393 SPO 99
SPO H401 1H40 H 0 0 N N N N N N 51.401 101.099 34.326 -3.465 -1.590 -11.896 H401 SPO 100
SPO H402 2H40 H 0 0 N N N N N N 50.212 101.559 35.590 -4.585 -2.974 -11.912 H402 SPO 101
SPO H403 3H40 H 0 0 N N N N N N 51.728 102.408 35.511 -4.119 -2.188 -13.440 H403 SPO 102
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
SPO CM1 O1 SING N N 1
SPO CM1 HM11 SING N N 2
SPO CM1 HM12 SING N N 3
SPO CM1 HM13 SING N N 4
SPO O1 C1 SING N N 5
SPO C1 C2 SING N N 6
SPO C1 C3 SING N N 7
SPO C1 C4 SING N N 8
SPO C2 H21A SING N N 9
SPO C2 H22A SING N N 10
SPO C2 H23 SING N N 11
SPO C3 H31 SING N N 12
SPO C3 H32A SING N N 13
SPO C3 H33 SING N N 14
SPO C4 C5 SING N N 15
SPO C4 H41 SING N N 16
SPO C4 H42 SING N N 17
SPO C5 C6 DOUB N E 18
SPO C5 H5 SING N N 19
SPO C6 C7 SING N N 20
SPO C6 H6 SING N N 21
SPO C7 C8 SING N N 22
SPO C7 C9 DOUB N E 23
SPO C8 H81 SING N N 24
SPO C8 H82 SING N N 25
SPO C8 H83 SING N N 26
SPO C9 C10 SING N N 27
SPO C9 H9 SING N N 28
SPO C10 C11 DOUB N E 29
SPO C10 H10 SING N N 30
SPO C11 C12 SING N N 31
SPO C11 H11 SING N N 32
SPO C12 C13 SING N N 33
SPO C12 C14 DOUB N E 34
SPO C13 H131 SING N N 35
SPO C13 H132 SING N N 36
SPO C13 H133 SING N N 37
SPO C14 C15 SING N N 38
SPO C14 H14 SING N N 39
SPO C15 C16 DOUB N E 40
SPO C15 H15 SING N N 41
SPO C16 C17 SING N N 42
SPO C16 H16 SING N N 43
SPO C17 C18 SING N N 44
SPO C17 C19 DOUB N Z 45
SPO C18 H181 SING N N 46
SPO C18 H182 SING N N 47
SPO C18 H183 SING N N 48
SPO C19 C20 SING N N 49
SPO C19 H19 SING N N 50
SPO C20 C21 DOUB N E 51
SPO C20 H20 SING N N 52
SPO C21 C22 SING N N 53
SPO C21 H21 SING N N 54
SPO C22 C23 DOUB N E 55
SPO C22 H22 SING N N 56
SPO C23 C24 SING N N 57
SPO C23 C25 SING N N 58
SPO C24 H241 SING N N 59
SPO C24 H242 SING N N 60
SPO C24 H243 SING N N 61
SPO C25 C26 DOUB N E 62
SPO C25 H25 SING N N 63
SPO C26 C27 SING N N 64
SPO C26 H26 SING N N 65
SPO C27 C28 DOUB N E 66
SPO C27 H27 SING N N 67
SPO C28 C29 SING N N 68
SPO C28 C30 SING N N 69
SPO C29 H291 SING N N 70
SPO C29 H292 SING N N 71
SPO C29 H293 SING N N 72
SPO C30 C31 SING N N 73
SPO C30 H301 SING N N 74
SPO C30 H302 SING N N 75
SPO C31 C32 SING N N 76
SPO C31 H311 SING N N 77
SPO C31 H312 SING N N 78
SPO C32 C33 DOUB N E 79
SPO C32 H32 SING N N 80
SPO C33 C34 SING N N 81
SPO C33 C35 SING N N 82
SPO C34 H341 SING N N 83
SPO C34 H342 SING N N 84
SPO C34 H343 SING N N 85
SPO C35 C36 SING N N 86
SPO C35 H351 SING N N 87
SPO C35 H352 SING N N 88
SPO C36 C37 SING N N 89
SPO C36 H361 SING N N 90
SPO C36 H362 SING N N 91
SPO C37 C38 DOUB N N 92
SPO C37 H37 SING N N 93
SPO C38 C39 SING N N 94
SPO C38 C40 SING N N 95
SPO C39 H391 SING N N 96
SPO C39 H392 SING N N 97
SPO C39 H393 SING N N 98
SPO C40 H401 SING N N 99
SPO C40 H402 SING N N 100
SPO C40 H403 SING N N 101
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
SPO SMILES ACDLabs 10.04 O(C(C\C=C\C(=C\C=C\C(=C\C=C\C(=C/C=C/C=C(/C=C/C=C(\C)CC\C=C(/C)CC\C=C(/C)C)C)C)C)C)(C)C)C
SPO SMILES_CANONICAL CACTVS 3.341 COC(C)(C)C\C=C\C(C)=C\C=C\C(C)=C\C=C\C(C)=C/C=C/C=C(C)/C=C/C=C(\C)CC\C=C(/C)CCC=C(C)C
SPO SMILES CACTVS 3.341 COC(C)(C)CC=CC(C)=CC=CC(C)=CC=CC(C)=CC=CC=C(C)C=CC=C(C)CCC=C(C)CCC=C(C)C
SPO SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 CC(=CCCC(=CCC/C(=C/C=CC(=CC=C\C=C(\C)/C=C/C=C(\C)/C=C/C=C(\C)/C=CCC(C)(C)OC)C)/C)C)C
SPO SMILES "OpenEye OEToolkits" 1.5.0 CC(=CCCC(=CCCC(=CC=CC(=CC=CC=C(C)C=CC=C(C)C=CC=C(C)C=CCC(C)(C)OC)C)C)C)C
SPO InChI InChI 1.03 InChI=1S/C41H60O/c1-34(2)20-14-23-37(5)26-17-29-38(6)27-15-24-35(3)21-12-13-22-36(4)25-16-28-39(7)30-18-31-40(8)32-19-33-41(9,10)42-11/h12-13,15-16,18-22,24-28,30-32H,14,17,23,29,33H2,1-11H3/b13-12+,24-15+,25-16+,30-18+,32-19+,35-21+,36-22-,37-26+,38-27+,39-28+,40-31+
SPO InChIKey InChI 1.03 FJOCMTHZSURUFA-KXCOHNEYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
SPO "SYSTEMATIC NAME" ACDLabs 10.04 "(3E,13cis)-1-methoxy-3,4-didehydro-1,2,7',8'-tetrahydro-psi,psi-carotene"
SPO "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (10E,18Z,20E,22E,24E,26E)-31-methoxy-2,6,10,14,19,23,27,31-octamethyl-dotriaconta-2,6,10,12,14,16,18,20,22,24,26,28-dodecaene
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
SPO 'Create component' 1999-07-08 RCSB
SPO 'Modify descriptor' 2011-06-04 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
SPO CM1 C 3.000 -9.375 1
SPO O1 O 4.299 -10.125 2
SPO C1 C 5.598 -9.375 3
SPO C2 C 4.848 -8.076 4
SPO C3 C 6.348 -10.674 5
SPO C4 C 6.897 -8.625 6
SPO C5 C 8.196 -9.375 7
SPO C6 C 9.495 -8.625 8
SPO C7 C 10.794 -9.375 9
SPO C8 C 10.794 -10.875 10
SPO C9 C 12.093 -8.625 11
SPO C10 C 13.392 -9.375 12
SPO C11 C 14.691 -8.625 13
SPO C12 C 15.990 -9.375 14
SPO C13 C 15.990 -10.875 15
SPO C14 C 17.290 -8.625 16
SPO C15 C 18.588 -9.375 17
SPO C16 C 19.887 -8.625 18
SPO C17 C 21.187 -9.375 19
SPO C18 C 21.187 -10.875 20
SPO C19 C 22.486 -8.625 21
SPO C20 C 22.486 -7.125 22
SPO C21 C 23.785 -6.375 23
SPO C22 C 23.785 -4.875 24
SPO C23 C 25.084 -4.125 25
SPO C24 C 26.383 -4.875 26
SPO C25 C 25.084 -2.625 27
SPO C26 C 26.383 -1.875 28
SPO C27 C 26.383 -0.375 29
SPO C28 C 27.682 0.375 30
SPO C29 C 28.981 -0.375 31
SPO C30 C 27.682 1.875 32
SPO C31 C 28.981 2.625 33
SPO C32 C 28.981 4.125 34
SPO C33 C 30.280 4.875 35
SPO C34 C 31.579 4.125 36
SPO C35 C 30.280 6.375 37
SPO C36 C 31.579 7.125 38
SPO C37 C 31.579 8.625 39
SPO C38 C 32.878 9.375 40
SPO C39 C 32.878 10.875 41
SPO C40 C 34.177 8.625 42
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
SPO CM1 O1 SINGLE NONE 1
SPO O1 C1 SINGLE NONE 2
SPO C1 C2 SINGLE NONE 3
SPO C1 C3 SINGLE NONE 4
SPO C1 C4 SINGLE NONE 5
SPO C4 C5 SINGLE ENDDOWNRIGHT 6
SPO C5 C6 DOUBLE NONE 7
SPO C6 C7 SINGLE ENDDOWNRIGHT 8
SPO C7 C8 SINGLE ENDDOWNRIGHT 9
SPO C7 C9 DOUBLE NONE 10
SPO C9 C10 SINGLE ENDDOWNRIGHT 11
SPO C10 C11 DOUBLE NONE 12
SPO C11 C12 SINGLE ENDDOWNRIGHT 13
SPO C12 C13 SINGLE ENDDOWNRIGHT 14
SPO C12 C14 DOUBLE NONE 15
SPO C14 C15 SINGLE ENDDOWNRIGHT 16
SPO C15 C16 DOUBLE NONE 17
SPO C16 C17 SINGLE ENDDOWNRIGHT 18
SPO C17 C18 SINGLE ENDDOWNRIGHT 19
SPO C17 C19 DOUBLE NONE 20
SPO C19 C20 SINGLE ENDUPRIGHT 21
SPO C20 C21 DOUBLE NONE 22
SPO C21 C22 SINGLE ENDUPRIGHT 23
SPO C22 C23 DOUBLE NONE 24
SPO C23 C24 SINGLE ENDDOWNRIGHT 25
SPO C23 C25 SINGLE ENDUPRIGHT 26
SPO C25 C26 DOUBLE NONE 27
SPO C26 C27 SINGLE ENDUPRIGHT 28
SPO C27 C28 DOUBLE NONE 29
SPO C28 C29 SINGLE ENDDOWNRIGHT 30
SPO C28 C30 SINGLE ENDUPRIGHT 31
SPO C30 C31 SINGLE NONE 32
SPO C31 C32 SINGLE ENDUPRIGHT 33
SPO C32 C33 DOUBLE NONE 34
SPO C33 C34 SINGLE ENDDOWNRIGHT 35
SPO C33 C35 SINGLE ENDUPRIGHT 36
SPO C35 C36 SINGLE NONE 37
SPO C36 C37 SINGLE NONE 38
SPO C37 C38 DOUBLE NONE 39
SPO C38 C39 SINGLE NONE 40
SPO C38 C40 SINGLE NONE 41
#
#
#
_pdbe_chem_comp_rdkit_properties.comp_id SPO
_pdbe_chem_comp_rdkit_properties.exactmw 568.464
_pdbe_chem_comp_rdkit_properties.amw 568.930
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 1
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 0
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 29
_pdbe_chem_comp_rdkit_properties.NumHBD 0
_pdbe_chem_comp_rdkit_properties.NumHBA 1
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 42
_pdbe_chem_comp_rdkit_properties.NumAtoms 102
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 1
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.415
_pdbe_chem_comp_rdkit_properties.NumRings 0
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 344.473
_pdbe_chem_comp_rdkit_properties.tpsa 9.230
_pdbe_chem_comp_rdkit_properties.CrippenClogP 12.787
_pdbe_chem_comp_rdkit_properties.CrippenMR 191.846
_pdbe_chem_comp_rdkit_properties.chi0v 20.908
_pdbe_chem_comp_rdkit_properties.chi1v 10.158
_pdbe_chem_comp_rdkit_properties.chi2v 2.892
_pdbe_chem_comp_rdkit_properties.chi3v 2.892
_pdbe_chem_comp_rdkit_properties.chi4v 1.364
_pdbe_chem_comp_rdkit_properties.chi0n 80.908
_pdbe_chem_comp_rdkit_properties.chi1n 40.158
_pdbe_chem_comp_rdkit_properties.chi2n 2.892
_pdbe_chem_comp_rdkit_properties.chi3n 2.892
_pdbe_chem_comp_rdkit_properties.chi4n 1.364
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.160
_pdbe_chem_comp_rdkit_properties.kappa1 5.810
_pdbe_chem_comp_rdkit_properties.kappa2 23.408
_pdbe_chem_comp_rdkit_properties.kappa3 24.622
_pdbe_chem_comp_rdkit_properties.Phi 3.238
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
SPO UniChem PDBe SPO
SPO UniChem ChEBI 45657
SPO UniChem ZINC ZINC000064446704
SPO UniChem PubChem 5289392
SPO UniChem Nikkaji J1.682.498D
SPO UniChem NMRShiftDB 60067031
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
SPO CM1 -11.764 -3.227 -4.315 ETKDGv3 1
SPO O1 -10.800 -2.439 -4.987 ETKDGv3 2
SPO C1 -10.100 -1.520 -4.146 ETKDGv3 3
SPO C2 -9.286 -0.629 -5.107 ETKDGv3 4
SPO C3 -9.101 -2.275 -3.236 ETKDGv3 5
SPO C4 -11.074 -0.624 -3.311 ETKDGv3 6
SPO C5 -10.394 0.510 -2.587 ETKDGv3 7
SPO C6 -9.876 0.352 -1.363 ETKDGv3 8
SPO C7 -9.161 1.432 -0.639 ETKDGv3 9
SPO C8 -9.474 2.884 -0.923 ETKDGv3 10
SPO C9 -8.223 1.076 0.261 ETKDGv3 11
SPO C10 -7.376 2.035 1.001 ETKDGv3 12
SPO C11 -6.511 1.607 1.929 ETKDGv3 13
SPO C12 -5.614 2.518 2.685 ETKDGv3 14
SPO C13 -6.008 3.958 2.923 ETKDGv3 15
SPO C14 -4.447 2.021 3.140 ETKDGv3 16
SPO C15 -3.422 2.823 3.843 ETKDGv3 17
SPO C16 -2.318 2.245 4.331 ETKDGv3 18
SPO C17 -1.263 3.012 5.045 ETKDGv3 19
SPO C18 -1.638 4.260 5.805 ETKDGv3 20
SPO C19 0.031 2.637 5.022 ETKDGv3 21
SPO C20 0.558 1.493 4.245 ETKDGv3 22
SPO C21 1.836 1.122 4.357 ETKDGv3 23
SPO C22 2.371 -0.004 3.560 ETKDGv3 24
SPO C23 3.627 -0.479 3.669 ETKDGv3 25
SPO C24 4.595 0.072 4.691 ETKDGv3 26
SPO C25 4.044 -1.563 2.744 ETKDGv3 27
SPO C26 5.313 -1.750 2.361 ETKDGv3 28
SPO C27 5.664 -2.836 1.421 ETKDGv3 29
SPO C28 6.912 -3.064 0.970 ETKDGv3 30
SPO C29 8.081 -2.212 1.399 ETKDGv3 31
SPO C30 7.151 -4.204 0.004 ETKDGv3 32
SPO C31 6.644 -3.875 -1.408 ETKDGv3 33
SPO C32 7.353 -2.674 -1.987 ETKDGv3 34
SPO C33 8.526 -2.724 -2.659 ETKDGv3 35
SPO C34 9.205 -4.034 -2.983 ETKDGv3 36
SPO C35 9.163 -1.429 -3.111 ETKDGv3 37
SPO C36 9.837 -0.719 -1.931 ETKDGv3 38
SPO C37 10.395 0.616 -2.358 ETKDGv3 39
SPO C38 9.695 1.772 -2.345 ETKDGv3 40
SPO C39 10.371 3.026 -2.837 ETKDGv3 41
SPO C40 8.273 1.841 -1.839 ETKDGv3 42
SPO HM11 -12.037 -4.077 -4.973 ETKDGv3 43
SPO HM12 -12.692 -2.643 -4.140 ETKDGv3 44
SPO HM13 -11.390 -3.662 -3.367 ETKDGv3 45
SPO H21A -8.625 0.076 -4.558 ETKDGv3 46
SPO H22A -8.643 -1.258 -5.761 ETKDGv3 47
SPO H23 -9.968 -0.041 -5.758 ETKDGv3 48
SPO H31 -9.613 -2.760 -2.380 ETKDGv3 49
SPO H32A -8.568 -3.056 -3.819 ETKDGv3 50
SPO H33 -8.342 -1.583 -2.814 ETKDGv3 51
SPO H41 -11.633 -1.233 -2.567 ETKDGv3 52
SPO H42 -11.830 -0.185 -3.998 ETKDGv3 53
SPO H5 -10.306 1.455 -3.107 ETKDGv3 54
SPO H6 -9.931 -0.626 -0.898 ETKDGv3 55
SPO H81 -10.453 2.995 -1.432 ETKDGv3 56
SPO H82 -9.556 3.460 0.022 ETKDGv3 57
SPO H83 -8.679 3.322 -1.562 ETKDGv3 58
SPO H9 -8.053 0.019 0.442 ETKDGv3 59
SPO H10 -7.421 3.088 0.760 ETKDGv3 60
SPO H11 -6.421 0.540 2.107 ETKDGv3 61
SPO H131 -5.806 4.251 3.974 ETKDGv3 62
SPO H132 -5.443 4.621 2.234 ETKDGv3 63
SPO H133 -7.095 4.113 2.768 ETKDGv3 64
SPO H14 -4.224 0.974 2.963 ETKDGv3 65
SPO H15 -3.544 3.894 3.934 ETKDGv3 66
SPO H16 -2.195 1.176 4.209 ETKDGv3 67
SPO H181 -1.605 5.134 5.121 ETKDGv3 68
SPO H182 -2.660 4.165 6.228 ETKDGv3 69
SPO H183 -0.945 4.442 6.655 ETKDGv3 70
SPO H19 0.750 3.226 5.582 ETKDGv3 71
SPO H20 -0.083 0.957 3.557 ETKDGv3 72
SPO H21 2.484 1.668 5.031 ETKDGv3 73
SPO H22 1.709 -0.450 2.823 ETKDGv3 74
SPO H241 4.102 0.183 5.679 ETKDGv3 75
SPO H242 5.449 -0.616 4.854 ETKDGv3 76
SPO H243 4.980 1.057 4.351 ETKDGv3 77
SPO H25 3.272 -2.198 2.322 ETKDGv3 78
SPO H26 6.084 -1.082 2.719 ETKDGv3 79
SPO H27 4.865 -3.485 1.079 ETKDGv3 80
SPO H291 8.224 -2.290 2.497 ETKDGv3 81
SPO H292 7.898 -1.153 1.121 ETKDGv3 82
SPO H293 9.021 -2.532 0.904 ETKDGv3 83
SPO H301 8.230 -4.459 -0.040 ETKDGv3 84
SPO H302 6.633 -5.116 0.373 ETKDGv3 85
SPO H311 5.556 -3.658 -1.366 ETKDGv3 86
SPO H312 6.762 -4.762 -2.066 ETKDGv3 87
SPO H32 6.896 -1.705 -1.799 ETKDGv3 88
SPO H341 8.554 -4.644 -3.644 ETKDGv3 89
SPO H342 10.168 -3.869 -3.509 ETKDGv3 90
SPO H343 9.424 -4.596 -2.054 ETKDGv3 91
SPO H351 8.389 -0.778 -3.571 ETKDGv3 92
SPO H352 9.925 -1.624 -3.897 ETKDGv3 93
SPO H361 9.132 -0.599 -1.083 ETKDGv3 94
SPO H362 10.677 -1.350 -1.568 ETKDGv3 95
SPO H37 11.420 0.625 -2.720 ETKDGv3 96
SPO H391 11.276 3.229 -2.227 ETKDGv3 97
SPO H392 10.669 2.898 -3.899 ETKDGv3 98
SPO H393 9.701 3.908 -2.768 ETKDGv3 99
SPO H401 8.240 1.566 -0.764 ETKDGv3 100
SPO H402 7.623 1.153 -2.417 ETKDGv3 101
SPO H403 7.855 2.864 -1.939 ETKDGv3 102
#