data_STR
#
_chem_comp.id STR
_chem_comp.name PROGESTERONE
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C21 H30 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 314.462
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code STR
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1A28
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
STR C1 C1 C 0 1 N N N N N N 36.722 34.750 39.821 1.622 -0.215 -2.831 C1 STR 1
STR C2 C2 C 0 1 N N N N N N 37.383 34.885 38.411 1.589 0.203 -4.300 C2 STR 2
STR C3 C3 C 0 1 N N N N N N 38.878 35.052 38.581 0.277 -0.285 -4.882 C3 STR 3
STR O3 O3 O 0 1 N N N N N N 39.501 35.761 37.778 0.233 -0.907 -5.923 O3 STR 4
STR C4 C4 C 0 1 N N N N N N 39.577 34.319 39.647 -0.934 0.032 -4.120 C4 STR 5
STR C5 C5 C 0 1 N N N N N N 38.911 33.608 40.559 -0.850 0.322 -2.822 C5 STR 6
STR C6 C6 C 0 1 N N N N N N 39.700 32.787 41.592 -2.136 0.659 -2.089 C6 STR 7
STR C7 C7 C 0 1 N N N N N N 39.171 32.980 43.035 -2.195 -0.157 -0.797 C7 STR 8
STR C8 C8 C 0 1 N N S N N N 37.627 32.810 43.155 -0.930 0.107 0.023 C8 STR 9
STR C9 C9 C 0 1 N N S N N N 36.932 33.817 42.168 0.294 -0.418 -0.738 C9 STR 10
STR C10 C10 C 0 1 N N R N N N 37.329 33.590 40.661 0.439 0.343 -2.060 C10 STR 11
STR C11 C11 C 0 1 N N N N N N 35.390 33.811 42.356 1.583 -0.272 0.065 C11 STR 12
STR C12 C12 C 0 1 N N N N N N 34.970 34.064 43.833 1.460 -0.913 1.457 C12 STR 13
STR C13 C13 C 0 1 N N S N N N 35.601 33.021 44.767 0.262 -0.293 2.163 C13 STR 14
STR C14 C14 C 0 1 N N S N N N 37.164 33.157 44.578 -1.008 -0.641 1.341 C14 STR 15
STR C15 C15 C 0 1 N N N N N N 37.755 32.350 45.755 -2.125 -0.201 2.293 C15 STR 16
STR C16 C16 C 0 1 N N N N N N 36.767 32.674 46.938 -1.617 -0.690 3.676 C16 STR 17
STR C17 C17 C 0 1 N N S N N N 35.529 33.364 46.288 -0.076 -0.800 3.561 C17 STR 18
STR C18 C18 C 0 1 N N N N N N 35.053 31.558 44.475 0.402 1.229 2.180 C18 STR 19
STR C19 C19 C 0 1 N N N N N N 36.852 32.203 40.113 0.752 1.797 -1.700 C19 STR 20
STR C20 C20 C 0 1 N N N N N N 34.178 33.098 46.985 0.587 0.060 4.605 C20 STR 21
STR O20 O20 O 0 1 N N N N N N 34.028 32.147 47.721 0.013 1.027 5.044 O20 STR 22
STR C21 C21 C 0 1 N N N N N N 33.060 34.033 46.751 1.968 -0.284 5.100 C21 STR 23
STR H11 1H1 H 0 1 N N N N N N 36.769 35.714 40.378 1.604 -1.303 -2.771 H11 STR 24
STR H12 2H1 H 0 1 N N N N N N 35.615 34.644 39.735 2.545 0.148 -2.378 H12 STR 25
STR H21 1H2 H 0 1 N N N N N N 37.124 34.034 37.737 2.424 -0.251 -4.834 H21 STR 26
STR H22 2H2 H 0 1 N N N N N N 36.930 35.705 37.806 1.646 1.289 -4.377 H22 STR 27
STR H4 H4 H 0 1 N N N N N N 40.672 34.301 39.770 -1.896 0.032 -4.612 H4 STR 28
STR H61 1H6 H 0 1 N N N N N N 39.721 31.707 41.314 -2.991 0.410 -2.718 H61 STR 29
STR H62 2H6 H 0 1 N N N N N N 40.790 33.009 41.532 -2.153 1.722 -1.850 H62 STR 30
STR H71 1H7 H 0 1 N N N N N N 39.700 32.301 43.744 -2.257 -1.218 -1.039 H71 STR 31
STR H72 2H7 H 0 1 N N N N N N 39.493 33.964 43.446 -3.072 0.136 -0.220 H72 STR 32
STR H8 H8 H 0 1 N N N N N N 37.359 31.754 42.915 -0.823 1.176 0.208 H8 STR 33
STR H9 H9 H 0 1 N N N N N N 37.315 34.829 42.435 0.128 -1.474 -0.953 H9 STR 34
STR H111 1H11 H 0 0 N N N N N N 34.898 34.538 41.668 2.397 -0.753 -0.476 H111 STR 35
STR H112 2H11 H 0 0 N N N N N N 34.941 32.867 41.967 1.812 0.786 0.181 H112 STR 36
STR H121 1H12 H 0 0 N N N N N N 35.207 35.104 44.156 1.274 -1.983 1.358 H121 STR 37
STR H122 2H12 H 0 0 N N N N N N 33.861 34.101 43.945 2.375 -0.745 2.025 H122 STR 38
STR H14 H14 H 0 1 N N N N N N 37.546 34.202 44.634 -1.062 -1.715 1.163 H14 STR 39
STR H151 1H15 H 0 0 N N N N N N 37.895 31.263 45.550 -3.066 -0.686 2.034 H151 STR 40
STR H152 2H15 H 0 0 N N N N N N 38.827 32.562 45.973 -2.234 0.883 2.284 H152 STR 41
STR H161 1H16 H 0 0 N N N N N N 36.506 31.783 47.556 -2.045 -1.666 3.908 H161 STR 42
STR H162 2H16 H 0 0 N N N N N N 37.232 33.273 47.754 -1.884 0.029 4.449 H162 STR 43
STR H17 H17 H 0 1 N N N N N N 35.575 34.469 46.428 0.237 -1.838 3.674 H17 STR 44
STR H181 1H18 H 0 0 N N N N N N 35.511 30.800 45.153 1.260 1.509 2.792 H181 STR 45
STR H182 2H18 H 0 0 N N N N N N 33.939 31.524 44.522 0.547 1.592 1.163 H182 STR 46
STR H183 3H18 H 0 0 N N N N N N 35.190 31.279 43.404 -0.501 1.673 2.599 H183 STR 47
STR H191 1H19 H 0 0 N N N N N N 37.287 31.371 40.715 0.796 2.395 -2.610 H191 STR 48
STR H192 2H19 H 0 0 N N N N N N 35.740 32.138 40.062 -0.029 2.185 -1.047 H192 STR 49
STR H193 3H19 H 0 0 N N N N N N 37.076 32.088 39.026 1.712 1.845 -1.186 H193 STR 50
STR H211 1H21 H 0 0 N N N N N N 32.083 33.840 47.254 2.280 0.446 5.845 H211 STR 51
STR H212 2H21 H 0 0 N N N N N N 33.396 35.066 47.000 1.955 -1.278 5.548 H212 STR 52
STR H213 3H21 H 0 0 N N N N N N 32.887 34.120 45.652 2.667 -0.271 4.264 H213 STR 53
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
STR C1 C2 SING N N 1
STR C1 C10 SING N N 2
STR C1 H11 SING N N 3
STR C1 H12 SING N N 4
STR C2 C3 SING N N 5
STR C2 H21 SING N N 6
STR C2 H22 SING N N 7
STR C3 O3 DOUB N N 8
STR C3 C4 SING N N 9
STR C4 C5 DOUB N N 10
STR C4 H4 SING N N 11
STR C5 C6 SING N N 12
STR C5 C10 SING N N 13
STR C6 C7 SING N N 14
STR C6 H61 SING N N 15
STR C6 H62 SING N N 16
STR C7 C8 SING N N 17
STR C7 H71 SING N N 18
STR C7 H72 SING N N 19
STR C8 C9 SING N N 20
STR C8 C14 SING N N 21
STR C8 H8 SING N N 22
STR C9 C10 SING N N 23
STR C9 C11 SING N N 24
STR C9 H9 SING N N 25
STR C10 C19 SING N N 26
STR C11 C12 SING N N 27
STR C11 H111 SING N N 28
STR C11 H112 SING N N 29
STR C12 C13 SING N N 30
STR C12 H121 SING N N 31
STR C12 H122 SING N N 32
STR C13 C14 SING N N 33
STR C13 C17 SING N N 34
STR C13 C18 SING N N 35
STR C14 C15 SING N N 36
STR C14 H14 SING N N 37
STR C15 C16 SING N N 38
STR C15 H151 SING N N 39
STR C15 H152 SING N N 40
STR C16 C17 SING N N 41
STR C16 H161 SING N N 42
STR C16 H162 SING N N 43
STR C17 C20 SING N N 44
STR C17 H17 SING N N 45
STR C18 H181 SING N N 46
STR C18 H182 SING N N 47
STR C18 H183 SING N N 48
STR C19 H191 SING N N 49
STR C19 H192 SING N N 50
STR C19 H193 SING N N 51
STR C20 O20 DOUB N N 52
STR C20 C21 SING N N 53
STR C21 H211 SING N N 54
STR C21 H212 SING N N 55
STR C21 H213 SING N N 56
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
STR SMILES ACDLabs 10.04 O=C4C=C2C(C1CCC3(C(C(=O)C)CCC3C1CC2)C)(C)CC4
STR SMILES_CANONICAL CACTVS 3.341 CC(=O)[C@H]1CC[C@H]2[C@@H]3CCC4=CC(=O)CC[C@]4(C)[C@H]3CC[C@]12C
STR SMILES CACTVS 3.341 CC(=O)[CH]1CC[CH]2[CH]3CCC4=CC(=O)CC[C]4(C)[CH]3CC[C]12C
STR SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 CC(=O)[C@H]1CC[C@@H]2[C@@]1(CC[C@H]3[C@H]2CCC4=CC(=O)CC[C@]34C)C
STR SMILES "OpenEye OEToolkits" 1.5.0 CC(=O)C1CCC2C1(CCC3C2CCC4=CC(=O)CCC34C)C
STR InChI InChI 1.03 InChI=1S/C21H30O2/c1-13(22)17-6-7-18-16-5-4-14-12-15(23)8-10-20(14,2)19(16)9-11-21(17,18)3/h12,16-19H,4-11H2,1-3H3/t16-,17+,18-,19-,20-,21+/m0/s1
STR InChIKey InChI 1.03 RJKFOVLPORLFTN-LEKSSAKUSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
STR "SYSTEMATIC NAME" ACDLabs 10.04 (14beta,17alpha)-pregn-4-ene-3,20-dione
STR "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (8S,9S,10R,13S,14S,17S)-17-ethanoyl-10,13-dimethyl-1,2,6,7,8,9,11,12,14,15,16,17-dodecahydrocyclopenta[a]phenanthren-3-one
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
STR 'Create component' 1999-07-08 EBI
STR 'Modify descriptor' 2011-06-04 RCSB
#
_pdbe_chem_comp_drugbank_details.comp_id STR
_pdbe_chem_comp_drugbank_details.drugbank_id DB00396
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name Progesterone
_pdbe_chem_comp_drugbank_details.description
'Progesterone is a hormone that occurs naturally in females, and is essential for endometrial receptivity, embryo implantation, and the successful establishment of pregnancy. A low progesterone concentration or an insufficient response to progesterone can cause infertility and pregnancy loss [A175609]. Progesterone is used in various contraceptive preparations to prevent ovulation and fertilization [T481], [A175612] as well as in other formulations to promote and support pregnancy.  Please see [Medroxyprogesterone acetate], [Megestrol acetate], [Dydrogesterone] and [Hydroxyprogesterone] entries for information on various other forms of progesterone.  Pharmaceutical progesterone is made from a plant source as a starting material and is chemically identical to progesterone of human ovarian origin [FDA label]. Progesterone is available in gelatinized capsule form, vaginal gel form, tablet form, vaginal insert form, and injection form, all used for various purposes [Label,F3898,F3904,F3901,F3907].'
_pdbe_chem_comp_drugbank_details.cas_number 57-83-0
_pdbe_chem_comp_drugbank_details.mechanism_of_action
'Progesterone binds and activates its nuclear receptor, _PR_, which plays an important part in the signaling of stimuli that maintain the endometrium during its preparation for pregnancy.  Progesterone receptor (PR) is a member of the nuclear/steroid hormone receptor (SHR) family of ligand-dependent transcription factors that is expressed primarily in female reproductive tissue as well as the central nervous system. As a result of its binding its associated steroid hormone, progesterone, the progesterone receptor (PR) modulates the expression of genes that regulate the development, differentiation, and proliferation of target tissues [A175666]. In humans, PR is found to be highly expressed in the stromal (connective tissue) cells during the secretory phase and during pregnancy [A175651].   Progesterone may prevent pregnancy by changing the consistency of cervical mucus to be unfavorable for sperm penetration, and by inhibiting follicle-stimulating hormone (FSH), which normally causes ovulation.  With perfect use, the first-year failure rate for progestin-only oral contraceptives is approximately 0.5%. The typical failure rate, however, is estimated to be approximately 5%, due to late or missed pills [F3904].'
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
STR Crinone ChEMBL Tradename
STR Endometrin ChEMBL Tradename
STR Gesterol ChEMBL Tradename
STR Progestasert ChEMBL Tradename
STR Progesterone ChEMBL Tradename
STR Progesterone ChEMBL 'United States Accepted Names'
STR Progestin ChEMBL Tradename
STR Prometrium ChEMBL Tradename
STR Regumate ChEMBL Tradename
STR Syngestrone ChEMBL Tradename
STR (S)-4-Pregnene-3,20-dione DrugBank ?
STR (S)-Pregn-4-en-3,20-dione DrugBank ?
STR (S)-Progesterone DrugBank ?
STR 17alpha-Progesterone DrugBank ?
STR '17α-progesterone' DrugBank ?
STR 4-Pregnene-3,20-dione DrugBank ?
STR Agolutin DrugBank ?
STR Akrolutin DrugBank ?
STR 'Corpus Luteum Hormone' DrugBank ?
STR delta(4)-Pregnene-3,20-dione DrugBank ?
STR Luteohormone DrugBank ?
STR Lutogynon DrugBank ?
STR Pregn-4-ene-3,20-dione DrugBank ?
STR Progesterone DrugBank ?
STR Progesteronum DrugBank ?
STR Agolutin DrugBank 'International brand'
STR Cyclogest DrugBank 'International brand'
STR Gesterol DrugBank 'International brand'
STR Gestone DrugBank 'International brand'
STR Progestasert DrugBank 'International brand'
STR Progestogel DrugBank 'International brand'
STR 'Qi Ning' DrugBank 'International brand'
STR Relantan DrugBank 'International brand'
STR Susten DrugBank 'International brand'
STR Utrogestran DrugBank 'International brand'
STR Utrovin DrugBank 'International brand'
STR Vasclor DrugBank 'International brand'
#
_pdbe_chem_comp_drugbank_classification.comp_id STR
_pdbe_chem_comp_drugbank_classification.drugbank_id DB00396
_pdbe_chem_comp_drugbank_classification.parent 'Gluco/mineralocorticoids, progestogins and derivatives'
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Steroids and steroid derivatives'
_pdbe_chem_comp_drugbank_classification.superclass 'Lipids and lipid-like molecules'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as gluco/mineralocorticoids, progestogins and derivatives. These are steroids with a structure based on a hydroxylated prostane moiety.'
#
loop_
_pdbe_chem_comp_drugbank_targets.comp_id
_pdbe_chem_comp_drugbank_targets.drugbank_id
_pdbe_chem_comp_drugbank_targets.name
_pdbe_chem_comp_drugbank_targets.organism
_pdbe_chem_comp_drugbank_targets.uniprot_id
_pdbe_chem_comp_drugbank_targets.pharmacologically_active
_pdbe_chem_comp_drugbank_targets.ordinal
STR DB00396 'Progesterone receptor' Humans P06401 yes 1
STR DB00396 'Mineralocorticoid receptor' Humans P08235 yes 2
STR DB00396 'Estrogen receptor' Humans P03372 unknown 3
STR DB00396 'Steroid 17-alpha-hydroxylase/17,20 lyase' Humans P05093 unknown 4
STR DB00396 'Kappa-type opioid receptor' Humans P41145 unknown 5
STR DB00396 'Alpha-1-acid glycoprotein 1' Humans P02763 unknown 6
STR DB00396 'Glucocorticoid receptor' Humans P04150 unknown 7
STR DB00396 'Androgen receptor' Humans P10275 unknown 8
STR DB00396 'Sex hormone-binding globulin' Humans P04278 unknown 9
STR DB00396 'Estrogen receptor beta' Humans Q92731 unknown 10
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
STR C1 C 5.736 -0.590 1
STR C2 C 4.314 -1.382 2
STR C3 C 4.302 -3.010 3
STR O3 O 3.000 -3.755 4
STR C4 C 5.711 -3.823 5
STR C5 C 7.114 -2.999 6
STR C6 C 8.468 -3.780 7
STR C7 C 9.815 -2.988 8
STR C8 C 9.791 -1.426 9
STR C9 C 8.492 -0.676 10
STR C10 C 7.127 -1.436 11
STR C11 C 8.492 0.824 12
STR C12 C 9.791 1.574 13
STR C13 C 11.090 0.824 14
STR C14 C 11.090 -0.676 15
STR C15 C 12.509 -1.133 16
STR C16 C 13.384 0.074 17
STR C17 C 12.509 1.281 18
STR C18 C 11.090 2.324 19
STR C19 C 7.138 0.064 20
STR C20 C 12.975 2.707 21
STR O20 O 11.973 3.823 22
STR C21 C 14.443 3.016 23
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
STR C1 C2 SINGLE NONE 1
STR C1 C10 SINGLE NONE 2
STR C2 C3 SINGLE NONE 3
STR C3 O3 DOUBLE NONE 4
STR C3 C4 SINGLE NONE 5
STR C4 C5 DOUBLE NONE 6
STR C5 C6 SINGLE NONE 7
STR C5 C10 SINGLE NONE 8
STR C6 C7 SINGLE NONE 9
STR C7 C8 SINGLE NONE 10
STR C8 C9 SINGLE NONE 11
STR C8 C14 SINGLE NONE 12
STR C9 C10 SINGLE NONE 13
STR C9 C11 SINGLE NONE 14
STR C10 C19 SINGLE BEGINWEDGE 15
STR C11 C12 SINGLE NONE 16
STR C12 C13 SINGLE NONE 17
STR C13 C14 SINGLE NONE 18
STR C13 C17 SINGLE NONE 19
STR C13 C18 SINGLE BEGINWEDGE 20
STR C14 C15 SINGLE NONE 21
STR C15 C16 SINGLE NONE 22
STR C16 C17 SINGLE NONE 23
STR C17 C20 SINGLE BEGINWEDGE 24
STR C20 O20 DOUBLE NONE 25
STR C20 C21 SINGLE NONE 26
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
STR MurckoScaffold S1 scaffold 'O=C1C=C2CC[C@H]3[C@@H]4CCCC4CC[C@@H]3C2CC1' InChI=1S/C17H24O/c18-13-6-9-15-12(10-13)5-8-16-14-3-1-2-11(14)4-7-17(15)16/h10-11,14-17H,1-9H2/t11?,14-,15?,16+,17-/m1/s1 LWNIAOVFYCEEPT-CYCVMUIFSA-N
STR cyclohexane F1 fragment C1CCCCC1 InChI=1S/C6H12/c1-2-4-6-5-3-1/h1-6H2 XDTMQSROBMDMFD-UHFFFAOYSA-N
STR cyclopentane F2 fragment C1CCCC1 InChI=1S/C5H10/c1-2-4-5-3-1/h1-5H2 RGSFGYAAUTVSQA-UHFFFAOYSA-N
STR steroid-like F3 fragment C1~C~C~C2~C(~C~1)~C~C~C1~C3~C~C~C~C~3~C~C~C~2~1 ? ?
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
STR C1 S1 1
STR C2 S1 1
STR C3 S1 1
STR O3 S1 1
STR C4 S1 1
STR C5 S1 1
STR C6 S1 1
STR C7 S1 1
STR C8 S1 1
STR C9 S1 1
STR C10 S1 1
STR C11 S1 1
STR C12 S1 1
STR C13 S1 1
STR C14 S1 1
STR C15 S1 1
STR C16 S1 1
STR C17 S1 1
STR C5 F1 1
STR C6 F1 1
STR C7 F1 1
STR C8 F1 1
STR C9 F1 1
STR C10 F1 1
STR C8 F1 2
STR C9 F1 2
STR C11 F1 2
STR C12 F1 2
STR C13 F1 2
STR C14 F1 2
STR C13 F2 1
STR C14 F2 1
STR C15 F2 1
STR C16 F2 1
STR C17 F2 1
STR C2 F3 1
STR C3 F3 1
STR C4 F3 1
STR C5 F3 1
STR C10 F3 1
STR C1 F3 1
STR C9 F3 1
STR C8 F3 1
STR C7 F3 1
STR C6 F3 1
STR C14 F3 1
STR C13 F3 1
STR C12 F3 1
STR C11 F3 1
STR C17 F3 1
STR C16 F3 1
STR C15 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id STR
_pdbe_chem_comp_rdkit_properties.exactmw 314.225
_pdbe_chem_comp_rdkit_properties.amw 314.469
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 2
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 0
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 4
_pdbe_chem_comp_rdkit_properties.NumHBD 0
_pdbe_chem_comp_rdkit_properties.NumHBA 2
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 23
_pdbe_chem_comp_rdkit_properties.NumAtoms 53
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 2
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.810
_pdbe_chem_comp_rdkit_properties.NumRings 4
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 4
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 3
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 6
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 181.797
_pdbe_chem_comp_rdkit_properties.tpsa 34.140
_pdbe_chem_comp_rdkit_properties.CrippenClogP 4.724
_pdbe_chem_comp_rdkit_properties.CrippenMR 90.881
_pdbe_chem_comp_rdkit_properties.chi0v 11.316
_pdbe_chem_comp_rdkit_properties.chi1v 6.408
_pdbe_chem_comp_rdkit_properties.chi2v 3.829
_pdbe_chem_comp_rdkit_properties.chi3v 3.829
_pdbe_chem_comp_rdkit_properties.chi4v 2.679
_pdbe_chem_comp_rdkit_properties.chi0n 41.316
_pdbe_chem_comp_rdkit_properties.chi1n 21.408
_pdbe_chem_comp_rdkit_properties.chi2n 3.829
_pdbe_chem_comp_rdkit_properties.chi3n 3.829
_pdbe_chem_comp_rdkit_properties.chi4n 2.679
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.920
_pdbe_chem_comp_rdkit_properties.kappa1 3.234
_pdbe_chem_comp_rdkit_properties.kappa2 5.037
_pdbe_chem_comp_rdkit_properties.kappa3 2.057
_pdbe_chem_comp_rdkit_properties.Phi 0.708
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
STR UniChem ChEMBL CHEMBL103
STR UniChem DrugBank DB00396
STR UniChem PDBe STR
STR UniChem 'Guide to Pharmacology' 2377
STR UniChem 'PubChem DOTF' 12015027
STR UniChem 'KEGG LIGAND' C00410
STR UniChem ChEBI 17026
STR UniChem NIH SAM001247039
STR UniChem ZINC ZINC000004428529
STR UniChem atlas progesterone
STR UniChem fdasrs 4G7DS2Q64Y
STR UniChem PharmGKB PA451123
STR UniChem HMDB HMDB0001830
STR UniChem Selleck Progesterone(Prometrium)
STR UniChem NMRShiftDB 60020984
STR UniChem Recon prgstrn
STR UniChem BindingDb 8903
STR UniChem LipidMaps LMST02030159
STR UniChem DrugCentral 2279
STR UniChem MetaboLights MTBLC17026
STR UniChem BRENDA 11588
STR UniChem BRENDA 127076
STR UniChem BRENDA 13473
STR UniChem BRENDA 20023
STR UniChem BRENDA 229814
STR UniChem BRENDA 229815
STR UniChem BRENDA 286
STR UniChem BRENDA 34377
STR UniChem BRENDA 5917
STR UniChem BRENDA 94795
STR UniChem BRENDA 94796
STR UniChem Rhea 17026
STR UniChem ChemicalBook CB15477619
STR UniChem ChemicalBook CB4224484
STR UniChem DailyMed PROGESTERONE
STR UniChem ClinicalTrials CRINONE
STR UniChem ClinicalTrials ENDOMETRIN
STR UniChem ClinicalTrials PROGESTASERT
STR UniChem ClinicalTrials PROGESTERONE
STR UniChem ClinicalTrials PROMETRIUM
STR UniChem ClinicalTrials UTROGESTAN
STR UniChem rxnorm CRINONE
STR UniChem rxnorm ENDOMETRIN
STR UniChem rxnorm PROGESTERONE
STR UniChem rxnorm 'PROGESTERONE, MICRONIZED'
STR UniChem rxnorm PROMETRIUM
STR UniChem MedChemExpress HY-N0437
STR UniChem 'Probes And Drugs' PD002656
STR UniChem 'EPA CompTox Dashboard' DTXSID3022370
STR UniChem eMolecules 29549914
STR UniChem eMolecules 511682
STR UniChem SureChEMBL SCHEMBL7671
STR UniChem 'PubChem TPHARMA' 14850243
STR UniChem 'PubChem TPHARMA' 14874443
STR UniChem PubChem 5994
STR UniChem LINCS LSM-3452
STR UniChem ACTor 257630-50-5
STR UniChem Nikkaji J2.329I
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
STR C1 -3.405 1.185 -0.709 ETKDGv3 1
STR C2 -4.888 1.097 -0.340 ETKDGv3 2
STR C3 -5.325 -0.330 -0.264 ETKDGv3 3
STR O3 -6.536 -0.623 -0.447 ETKDGv3 4
STR C4 -4.368 -1.386 0.089 ETKDGv3 5
STR C5 -3.057 -1.135 0.264 ETKDGv3 6
STR C6 -2.171 -2.253 0.763 ETKDGv3 7
STR C7 -0.819 -2.240 0.057 ETKDGv3 8
STR C8 -0.140 -0.867 0.198 ETKDGv3 9
STR C9 -1.046 0.237 -0.447 ETKDGv3 10
STR C10 -2.489 0.292 0.191 ETKDGv3 11
STR C11 -0.329 1.626 -0.510 ETKDGv3 12
STR C12 1.096 1.557 -1.108 ETKDGv3 13
STR C13 1.955 0.490 -0.391 ETKDGv3 14
STR C14 1.226 -0.855 -0.520 ETKDGv3 15
STR C15 2.270 -1.900 -0.143 ETKDGv3 16
STR C16 3.605 -1.294 -0.614 ETKDGv3 17
STR C17 3.288 0.147 -1.095 ETKDGv3 18
STR C18 2.228 0.920 1.088 ETKDGv3 19
STR C19 -2.462 0.873 1.628 ETKDGv3 20
STR C20 4.393 1.177 -0.907 ETKDGv3 21
STR O20 4.236 2.294 -1.376 ETKDGv3 22
STR C21 5.675 0.877 -0.183 ETKDGv3 23
STR H11 -3.105 2.252 -0.641 ETKDGv3 24
STR H12 -3.299 0.879 -1.774 ETKDGv3 25
STR H21 -5.487 1.630 -1.110 ETKDGv3 26
STR H22 -5.074 1.590 0.637 ETKDGv3 27
STR H4 -4.750 -2.393 0.211 ETKDGv3 28
STR H61 -2.638 -3.248 0.593 ETKDGv3 29
STR H62 -2.023 -2.135 1.858 ETKDGv3 30
STR H71 -0.181 -3.026 0.515 ETKDGv3 31
STR H72 -0.959 -2.494 -1.017 ETKDGv3 32
STR H8 0.011 -0.680 1.279 ETKDGv3 33
STR H9 -1.185 -0.067 -1.511 ETKDGv3 34
STR H111 -0.277 2.088 0.495 ETKDGv3 35
STR H112 -0.913 2.319 -1.149 ETKDGv3 36
STR H121 1.018 1.321 -2.192 ETKDGv3 37
STR H122 1.576 2.556 -1.022 ETKDGv3 38
STR H14 1.010 -1.035 -1.602 ETKDGv3 39
STR H151 2.279 -2.063 0.957 ETKDGv3 40
STR H152 2.070 -2.868 -0.653 ETKDGv3 41
STR H161 4.315 -1.316 0.237 ETKDGv3 42
STR H162 4.036 -1.892 -1.447 ETKDGv3 43
STR H17 3.105 0.086 -2.193 ETKDGv3 44
STR H181 2.750 1.900 1.112 ETKDGv3 45
STR H182 2.867 0.186 1.619 ETKDGv3 46
STR H183 1.305 1.043 1.684 ETKDGv3 47
STR H191 -3.443 0.732 2.128 ETKDGv3 48
STR H192 -2.248 1.961 1.621 ETKDGv3 49
STR H193 -1.703 0.371 2.261 ETKDGv3 50
STR H211 6.359 1.752 -0.222 ETKDGv3 51
STR H212 6.186 0.014 -0.659 ETKDGv3 52
STR H213 5.462 0.651 0.882 ETKDGv3 53
#