data_SV2
#
_chem_comp.id SV2
_chem_comp.name "[{2-[(guanine-9-yl)methyl]propane-1,3-diyl}bis(oxymethylene)]bis(phosphonic acid) "
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C11 H19 N5 O9 P2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2013-02-20
_chem_comp.pdbx_modified_date 2013-03-22
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 427.244
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code SV2
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4IJQ
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
SV2 OAE OAE O 0 1 N N N N N N -9.463 -19.059 -13.398 -2.622 2.929 -1.248 OAE SV2 1
SV2 PAZ PAZ P 0 1 N N N N N N -8.729 -17.938 -14.213 -2.890 3.524 0.223 PAZ SV2 2
SV2 OAF OAF O 0 1 N N N N N N -7.817 -17.099 -13.256 -3.287 5.081 0.108 OAF SV2 3
SV2 OAC OAC O 0 1 N N N N N N -9.716 -17.048 -14.938 -3.997 2.779 0.863 OAC SV2 4
SV2 CAL CAL C 0 1 N N N N N N -7.652 -18.780 -15.434 -1.381 3.355 1.232 CAL SV2 5
SV2 OAR OAR O 0 1 N N N N N N -8.273 -19.243 -16.582 -1.029 1.974 1.334 OAR SV2 6
SV2 CAJ CAJ C 0 1 N N N N N N -7.394 -19.510 -17.597 -0.447 1.434 0.146 CAJ SV2 7
SV2 CAX CAX C 0 1 N N N N N N -7.620 -18.814 -18.906 -0.111 -0.043 0.369 CAX SV2 8
SV2 CAK CAK C 0 1 N N N N N N -6.315 -18.641 -19.633 -1.404 -0.833 0.581 CAK SV2 9
SV2 OAS OAS O 0 1 N N N N N N -6.146 -17.502 -20.402 -1.086 -2.183 0.925 OAS SV2 10
SV2 CAM CAM C 0 1 N N N N N N -5.223 -16.615 -19.841 -2.226 -2.990 1.225 CAM SV2 11
SV2 PBA PBA P 0 1 N N N N N N -4.266 -15.576 -20.999 -3.093 -3.415 -0.321 PBA SV2 12
SV2 OAG OAG O 0 1 N N N N N N -5.292 -14.584 -21.653 -2.058 -4.100 -1.347 OAG SV2 13
SV2 OAH OAH O 0 1 N N N N N N -3.237 -14.825 -20.089 -4.290 -4.444 -0.000 OAH SV2 14
SV2 OAD OAD O 0 1 N N N N N N -3.534 -16.355 -22.062 -3.649 -2.186 -0.929 OAD SV2 15
SV2 CAN CAN C 0 1 N N N N N N -8.703 -17.704 -19.059 0.625 -0.589 -0.857 CAN SV2 16
SV2 N9 N9 N 0 1 Y N N N N N -9.510 -18.262 -20.138 1.915 0.092 -0.995 N9 SV2 17
SV2 C8 C8 C 0 1 Y N N N N N -9.506 -17.911 -21.441 2.174 1.175 -1.782 C8 SV2 18
SV2 N7 N7 N 0 1 Y N N N N N -10.347 -18.748 -22.093 3.424 1.517 -1.654 N7 SV2 19
SV2 C5 C5 C 0 1 Y N N N N N -10.846 -19.655 -21.161 4.028 0.676 -0.782 C5 SV2 20
SV2 C4 C4 C 0 1 Y N N N N N -10.307 -19.374 -19.934 3.071 -0.237 -0.356 C4 SV2 21
SV2 N3 N3 N 0 1 N N N N N N -10.666 -20.124 -18.838 3.433 -1.205 0.545 N3 SV2 22
SV2 C2 C2 C 0 1 N N N N N N -11.527 -21.149 -18.985 4.708 -1.273 1.010 C2 SV2 23
SV2 N2 N2 N 0 1 N N N N N N -11.918 -21.947 -17.875 5.030 -2.254 1.909 N2 SV2 24
SV2 N1 N1 N 0 1 N N N N N N -12.048 -21.448 -20.188 5.646 -0.432 0.628 N1 SV2 25
SV2 C6 C6 C 0 1 N N N N N N -11.746 -20.740 -21.278 5.386 0.554 -0.245 C6 SV2 26
SV2 O6 O6 O 0 1 N N N N N N -12.292 -21.037 -22.515 6.264 1.331 -0.587 O6 SV2 27
SV2 H1 H1 H 0 1 N N N N N N -10.402 -18.971 -13.512 -1.908 3.371 -1.727 H1 SV2 28
SV2 H2 H2 H 0 1 N N N N N N -8.058 -16.182 -13.312 -4.083 5.246 -0.416 H2 SV2 29
SV2 H3 H3 H 0 1 N N N N N N -7.187 -19.642 -14.933 -0.566 3.904 0.761 H3 SV2 30
SV2 H4 H4 H 0 1 N N N N N N -6.871 -18.068 -15.739 -1.563 3.758 2.228 H4 SV2 31
SV2 H5 H5 H 0 1 N N N N N N -7.430 -20.593 -17.788 -1.153 1.525 -0.679 H5 SV2 32
SV2 H6 H6 H 0 1 N N N N N N -6.389 -19.233 -17.245 0.465 1.981 -0.093 H6 SV2 33
SV2 H7 H7 H 0 1 N N N N N N -8.079 -19.623 -19.494 0.524 -0.142 1.249 H7 SV2 34
SV2 H8 H8 H 0 1 N N N N N N -6.195 -19.507 -20.300 -1.979 -0.378 1.388 H8 SV2 35
SV2 H9 H9 H 0 1 N N N N N N -5.516 -18.647 -18.877 -1.992 -0.821 -0.336 H9 SV2 36
SV2 H10 H10 H 0 1 N N N N N N -4.505 -17.209 -19.256 -1.903 -3.904 1.724 H10 SV2 37
SV2 H11 H11 H 0 1 N N N N N N -5.775 -15.942 -19.169 -2.900 -2.438 1.880 H11 SV2 38
SV2 H12 H12 H 0 1 N N N N N N -5.254 -14.666 -22.599 -1.712 -4.951 -1.046 H12 SV2 39
SV2 H13 H13 H 0 1 N N N N N N -2.355 -15.010 -20.388 -4.795 -4.714 -0.779 H13 SV2 40
SV2 H14 H14 H 0 1 N N N N N N -8.257 -16.739 -19.343 0.790 -1.659 -0.734 H14 SV2 41
SV2 H15 H15 H 0 1 N N N N N N -9.289 -17.580 -18.137 0.024 -0.414 -1.749 H15 SV2 42
SV2 H16 H16 H 0 1 N N N N N N -8.935 -17.108 -21.884 1.454 1.672 -2.415 H16 SV2 43
SV2 H17 H17 H 0 1 N N N N N N -10.290 -19.909 -17.937 2.774 -1.847 0.853 H17 SV2 44
SV2 H18 H18 H 0 1 N N N N N N -12.561 -22.702 -18.004 4.375 -2.929 2.145 H18 SV2 45
SV2 H19 H19 H 0 1 N N N N N N -11.550 -21.753 -16.966 5.913 -2.273 2.310 H19 SV2 46
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
SV2 O6 C6 DOUB N N 1
SV2 N7 C8 DOUB Y N 2
SV2 N7 C5 SING Y N 3
SV2 OAD PBA DOUB N N 4
SV2 OAG PBA SING N N 5
SV2 C8 N9 SING Y N 6
SV2 C6 C5 SING N N 7
SV2 C6 N1 SING N N 8
SV2 C5 C4 DOUB Y N 9
SV2 PBA OAH SING N N 10
SV2 PBA CAM SING N N 11
SV2 OAS CAM SING N N 12
SV2 OAS CAK SING N N 13
SV2 N1 C2 DOUB N N 14
SV2 N9 C4 SING Y N 15
SV2 N9 CAN SING N N 16
SV2 C4 N3 SING N N 17
SV2 CAK CAX SING N N 18
SV2 CAN CAX SING N N 19
SV2 C2 N3 SING N N 20
SV2 C2 N2 SING N N 21
SV2 CAX CAJ SING N N 22
SV2 CAJ OAR SING N N 23
SV2 OAR CAL SING N N 24
SV2 CAL PAZ SING N N 25
SV2 OAC PAZ DOUB N N 26
SV2 PAZ OAE SING N N 27
SV2 PAZ OAF SING N N 28
SV2 OAE H1 SING N N 29
SV2 OAF H2 SING N N 30
SV2 CAL H3 SING N N 31
SV2 CAL H4 SING N N 32
SV2 CAJ H5 SING N N 33
SV2 CAJ H6 SING N N 34
SV2 CAX H7 SING N N 35
SV2 CAK H8 SING N N 36
SV2 CAK H9 SING N N 37
SV2 CAM H10 SING N N 38
SV2 CAM H11 SING N N 39
SV2 OAG H12 SING N N 40
SV2 OAH H13 SING N N 41
SV2 CAN H14 SING N N 42
SV2 CAN H15 SING N N 43
SV2 C8 H16 SING N N 44
SV2 N3 H17 SING N N 45
SV2 N2 H18 SING N N 46
SV2 N2 H19 SING N N 47
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
SV2 SMILES ACDLabs 12.01 O=P(O)(O)COCC(COCP(=O)(O)O)Cn1c2NC(=NC(=O)c2nc1)N
SV2 InChI InChI 1.03 InChI=1S/C11H19N5O9P2/c12-11-14-9-8(10(17)15-11)13-4-16(9)1-7(2-24-5-26(18,19)20)3-25-6-27(21,22)23/h4,7H,1-3,5-6H2,(H2,18,19,20)(H2,21,22,23)(H3,12,14,15,17)
SV2 InChIKey InChI 1.03 VGXYLSOVNUSSKA-UHFFFAOYSA-N
SV2 SMILES_CANONICAL CACTVS 3.370 NC1=NC(=O)c2ncn(CC(COC[P](O)(O)=O)COC[P](O)(O)=O)c2N1
SV2 SMILES CACTVS 3.370 NC1=NC(=O)c2ncn(CC(COC[P](O)(O)=O)COC[P](O)(O)=O)c2N1
SV2 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 c1nc2c(n1CC(COCP(=O)(O)O)COCP(=O)(O)O)NC(=NC2=O)N
SV2 SMILES "OpenEye OEToolkits" 1.7.6 c1nc2c(n1CC(COCP(=O)(O)O)COCP(=O)(O)O)NC(=NC2=O)N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
SV2 "SYSTEMATIC NAME" ACDLabs 12.01 "[{2-[(2-amino-6-oxo-3,6-dihydro-9H-purin-9-yl)methyl]propane-1,3-diyl}bis(oxymethanediyl)]bis(phosphonic acid)"
SV2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[2-[(2-azanyl-6-oxidanylidene-3H-purin-9-yl)methyl]-3-(phosphonomethoxy)propoxy]methylphosphonic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
SV2 'Create component' 2013-02-20 PDBJ
SV2 'Initial release' 2013-03-27 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
SV2 OAE O 16.304 -2.724 1
SV2 PAZ P 15.995 -1.257 2
SV2 OAF O 15.685 0.211 3
SV2 OAC O 17.462 -0.947 4
SV2 CAL C 14.527 -1.566 5
SV2 OAR O 13.525 -0.449 6
SV2 CAJ C 12.057 -0.759 7
SV2 CAX C 11.056 0.358 8
SV2 CAK C 11.522 1.784 9
SV2 OAS O 12.989 2.093 10
SV2 CAM C 13.455 3.518 11
SV2 PBA P 14.923 3.828 12
SV2 OAG O 14.614 5.296 13
SV2 OAH O 15.232 2.360 14
SV2 OAD O 16.391 4.137 15
SV2 CAN C 9.588 0.048 16
SV2 N9 N 9.122 -1.377 17
SV2 C8 C 9.997 -2.584 18
SV2 N7 N 9.122 -3.792 19
SV2 C5 C 7.702 -3.334 20
SV2 C4 C 7.702 -1.835 21
SV2 N3 N 6.404 -1.085 22
SV2 C2 C 5.104 -1.835 23
SV2 N2 N 3.805 -1.085 24
SV2 N1 N 5.104 -3.334 25
SV2 C6 C 6.404 -4.085 26
SV2 O6 O 6.404 -5.585 27
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
SV2 O6 C6 DOUBLE NONE 1
SV2 N7 C8 DOUBLE NONE 2
SV2 N7 C5 SINGLE NONE 3
SV2 OAD PBA DOUBLE NONE 4
SV2 OAG PBA SINGLE NONE 5
SV2 C8 N9 SINGLE NONE 6
SV2 C6 C5 SINGLE NONE 7
SV2 C6 N1 SINGLE NONE 8
SV2 C5 C4 DOUBLE NONE 9
SV2 PBA OAH SINGLE NONE 10
SV2 PBA CAM SINGLE NONE 11
SV2 OAS CAM SINGLE NONE 12
SV2 OAS CAK SINGLE NONE 13
SV2 N1 C2 DOUBLE NONE 14
SV2 N9 C4 SINGLE NONE 15
SV2 N9 CAN SINGLE NONE 16
SV2 C4 N3 SINGLE NONE 17
SV2 CAK CAX SINGLE NONE 18
SV2 CAN CAX SINGLE NONE 19
SV2 C2 N3 SINGLE NONE 20
SV2 C2 N2 SINGLE NONE 21
SV2 CAX CAJ SINGLE NONE 22
SV2 CAJ OAR SINGLE NONE 23
SV2 OAR CAL SINGLE NONE 24
SV2 CAL PAZ SINGLE NONE 25
SV2 OAC PAZ DOUBLE NONE 26
SV2 PAZ OAE SINGLE NONE 27
SV2 PAZ OAF SINGLE NONE 28
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
SV2 MurckoScaffold S1 scaffold 'O=c1nc[nH]c2[nH]cnc12' InChI=1S/C5H4N4O/c10-5-3-4(7-1-6-3)8-2-9-5/h1-2H,(H2,6,7,8,9,10) FDGQSTZJBFJUBT-UHFFFAOYSA-N
SV2 imidazole F1 fragment 'c1c[nH]cn1' InChI=1S/C3H4N2/c1-2-5-3-4-1/h1-3H,(H,4,5) RAXXELZNTBOGNW-UHFFFAOYSA-N
SV2 purine F2 fragment 'c1ncc2[nH]cnc2n1' InChI=1S/C5H4N4/c1-4-5(8-2-6-1)9-3-7-4/h1-3H,(H,6,7,8,9) KDCGOANMDULRCW-UHFFFAOYSA-N
SV2 pyrimidine F3 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
SV2 N9 S1 1
SV2 C8 S1 1
SV2 N7 S1 1
SV2 C5 S1 1
SV2 C4 S1 1
SV2 N3 S1 1
SV2 C2 S1 1
SV2 N1 S1 1
SV2 C6 S1 1
SV2 O6 S1 1
SV2 C5 F1 1
SV2 C4 F1 1
SV2 N9 F1 1
SV2 C8 F1 1
SV2 N7 F1 1
SV2 N7 F2 1
SV2 C8 F2 1
SV2 N9 F2 1
SV2 C4 F2 1
SV2 C5 F2 1
SV2 C6 F2 1
SV2 N1 F2 1
SV2 C2 F2 1
SV2 N3 F2 1
SV2 C5 F3 1
SV2 C6 F3 1
SV2 N1 F3 1
SV2 C2 F3 1
SV2 N3 F3 1
SV2 C4 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id SV2
_pdbe_chem_comp_rdkit_properties.exactmw 427.066
_pdbe_chem_comp_rdkit_properties.amw 427.247
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 14
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 7
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 15
_pdbe_chem_comp_rdkit_properties.NumHBD 6
_pdbe_chem_comp_rdkit_properties.NumHBA 13
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 27
_pdbe_chem_comp_rdkit_properties.NumAtoms 46
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 16
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.545
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 178.427
_pdbe_chem_comp_rdkit_properties.tpsa 223.110
_pdbe_chem_comp_rdkit_properties.CrippenClogP -1.288
_pdbe_chem_comp_rdkit_properties.CrippenMR 88.855
_pdbe_chem_comp_rdkit_properties.chi0v 14.094
_pdbe_chem_comp_rdkit_properties.chi1v 9.135
_pdbe_chem_comp_rdkit_properties.chi2v 2.770
_pdbe_chem_comp_rdkit_properties.chi3v 2.770
_pdbe_chem_comp_rdkit_properties.chi4v 1.644
_pdbe_chem_comp_rdkit_properties.chi0n 31.305
_pdbe_chem_comp_rdkit_properties.chi1n 15.024
_pdbe_chem_comp_rdkit_properties.chi2n 2.140
_pdbe_chem_comp_rdkit_properties.chi3n 2.140
_pdbe_chem_comp_rdkit_properties.chi4n 1.329
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.630
_pdbe_chem_comp_rdkit_properties.kappa1 7.320
_pdbe_chem_comp_rdkit_properties.kappa2 8.587
_pdbe_chem_comp_rdkit_properties.kappa3 7.126
_pdbe_chem_comp_rdkit_properties.Phi 2.328
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
SV2 UniChem ChEMBL CHEMBL2325752
SV2 UniChem PDBe SV2
SV2 UniChem ZINC ZINC000095582145
SV2 UniChem 'PubChem TPHARMA' 163681771
SV2 UniChem PubChem 135566801
SV2 UniChem BindingDb 50427810
SV2 UniChem BRENDA 251305
SV2 UniChem 'PubChem TPHARMA' 46489602
SV2 UniChem Nikkaji J3.169.321G
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
SV2 OAE 3.171 4.353 1.296 ETKDGv3 1
SV2 PAZ 2.871 2.816 0.654 ETKDGv3 2
SV2 OAF 3.935 1.695 1.343 ETKDGv3 3
SV2 OAC 3.083 2.851 -0.842 ETKDGv3 4
SV2 CAL 1.159 2.332 1.007 ETKDGv3 5
SV2 OAR 0.930 1.051 0.467 ETKDGv3 6
SV2 CAJ -0.417 0.681 0.680 ETKDGv3 7
SV2 CAX -0.707 -0.685 0.025 ETKDGv3 8
SV2 CAK -0.054 -1.836 0.814 ETKDGv3 9
SV2 OAS 1.351 -1.690 0.821 ETKDGv3 10
SV2 CAM 1.938 -2.800 1.461 ETKDGv3 11
SV2 PBA 3.726 -2.525 1.589 ETKDGv3 12
SV2 OAG 4.460 -3.887 2.274 ETKDGv3 13
SV2 OAH 4.015 -1.174 2.565 ETKDGv3 14
SV2 OAD 4.299 -2.286 0.211 ETKDGv3 15
SV2 CAN -0.287 -0.735 -1.463 ETKDGv3 16
SV2 N9 -0.962 0.292 -2.251 ETKDGv3 17
SV2 C8 -0.513 1.633 -2.492 ETKDGv3 18
SV2 N7 -1.460 2.438 -2.879 ETKDGv3 19
SV2 C5 -2.625 1.619 -2.903 ETKDGv3 20
SV2 C4 -2.344 0.401 -2.536 ETKDGv3 21
SV2 N3 -3.357 -0.591 -2.342 ETKDGv3 22
SV2 C2 -4.732 -0.217 -2.589 ETKDGv3 23
SV2 N2 -5.771 -1.180 -2.424 ETKDGv3 24
SV2 N1 -5.030 1.003 -2.961 ETKDGv3 25
SV2 C6 -4.014 2.007 -3.136 ETKDGv3 26
SV2 O6 -4.320 3.181 -3.472 ETKDGv3 27
SV2 H1 3.016 4.256 2.270 ETKDGv3 28
SV2 H2 3.740 1.724 2.313 ETKDGv3 29
SV2 H3 0.489 3.091 0.544 ETKDGv3 30
SV2 H4 1.020 2.326 2.111 ETKDGv3 31
SV2 H5 -1.111 1.433 0.240 ETKDGv3 32
SV2 H6 -0.637 0.615 1.770 ETKDGv3 33
SV2 H7 -1.806 -0.847 0.074 ETKDGv3 34
SV2 H8 -0.451 -1.823 1.855 ETKDGv3 35
SV2 H9 -0.353 -2.801 0.340 ETKDGv3 36
SV2 H10 1.539 -2.932 2.493 ETKDGv3 37
SV2 H11 1.772 -3.727 0.869 ETKDGv3 38
SV2 H12 4.083 -3.942 3.189 ETKDGv3 39
SV2 H13 5.002 -1.109 2.621 ETKDGv3 40
SV2 H14 0.813 -0.610 -1.563 ETKDGv3 41
SV2 H15 -0.544 -1.730 -1.886 ETKDGv3 42
SV2 H16 0.507 1.959 -2.340 ETKDGv3 43
SV2 H17 -3.109 -1.556 -2.032 ETKDGv3 44
SV2 H18 -5.546 -2.155 -2.126 ETKDGv3 45
SV2 H19 -6.767 -0.921 -2.598 ETKDGv3 46
#