data_SW7
#
_chem_comp.id SW7
_chem_comp.name 4-methylbenzamide
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C8 H9 N O"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2020-03-11
_chem_comp.pdbx_modified_date 2020-07-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 135.163
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code SW7
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5RA7
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
SW7 C4 C1 C 0 1 Y N N N N N 50.837 113.330 30.121 0.628 -0.031 0.001 C4 SW7 1
SW7 C5 C2 C 0 1 Y N N N N N 51.720 113.667 31.155 -0.094 -1.226 0.000 C5 SW7 2
SW7 C6 C3 C 0 1 Y N N N N N 51.302 114.522 32.178 -1.473 -1.194 -0.000 C6 SW7 3
SW7 C7 C4 C 0 1 N N N N N N 51.248 112.308 29.082 2.106 -0.058 0.000 C7 SW7 4
SW7 N N1 N 0 1 N N N N N N 52.318 111.482 29.376 2.801 1.097 0.001 N SW7 5
SW7 C C5 C 0 1 N N N N N N 49.543 115.984 33.248 -3.647 0.045 0.000 C SW7 6
SW7 O O1 O 0 1 N N N N N N 50.656 112.153 28.018 2.695 -1.121 -0.001 O SW7 7
SW7 C1 C6 C 0 1 Y N N N N N 50.009 115.053 32.170 -2.141 0.018 0.000 C1 SW7 8
SW7 C2 C7 C 0 1 Y N N N N N 49.128 114.720 31.125 -1.431 1.206 0.001 C2 SW7 9
SW7 C3 C8 C 0 1 Y N N N N N 49.552 113.862 30.102 -0.051 1.188 -0.004 C3 SW7 10
SW7 H1 H1 H 0 1 N N N N N N 52.723 113.266 31.161 0.426 -2.172 -0.001 H1 SW7 11
SW7 H2 H2 H 0 1 N N N N N N 51.981 114.774 32.979 -2.033 -2.117 -0.001 H2 SW7 12
SW7 H3 H3 H 0 1 N N N N N N 52.596 110.774 28.727 2.331 1.946 0.002 H3 SW7 13
SW7 H4 H4 H 0 1 N N N N N N 52.813 111.593 30.238 3.771 1.080 0.001 H4 SW7 14
SW7 H5 H5 H 0 1 N N N N N N 49.088 115.403 34.064 -4.011 0.051 1.028 H5 SW7 15
SW7 H6 H6 H 0 1 N N N N N N 50.400 116.553 33.637 -3.995 0.941 -0.513 H6 SW7 16
SW7 H7 H7 H 0 1 N N N N N N 48.799 116.680 32.834 -4.027 -0.838 -0.514 H7 SW7 17
SW7 H8 H8 H 0 1 N N N N N N 48.127 115.125 31.111 -1.958 2.148 0.001 H8 SW7 18
SW7 H9 H9 H 0 1 N N N N N N 48.878 113.613 29.295 0.502 2.116 -0.003 H9 SW7 19
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
SW7 O C7 DOUB N N 1
SW7 C7 N SING N N 2
SW7 C7 C4 SING N N 3
SW7 C3 C4 DOUB Y N 4
SW7 C3 C2 SING Y N 5
SW7 C4 C5 SING Y N 6
SW7 C2 C1 DOUB Y N 7
SW7 C5 C6 DOUB Y N 8
SW7 C1 C6 SING Y N 9
SW7 C1 C SING N N 10
SW7 C5 H1 SING N N 11
SW7 C6 H2 SING N N 12
SW7 N H3 SING N N 13
SW7 N H4 SING N N 14
SW7 C H5 SING N N 15
SW7 C H6 SING N N 16
SW7 C H7 SING N N 17
SW7 C2 H8 SING N N 18
SW7 C3 H9 SING N N 19
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
SW7 InChI InChI 1.03 InChI=1S/C8H9NO/c1-6-2-4-7(5-3-6)8(9)10/h2-5H,1H3,(H2,9,10)
SW7 InChIKey InChI 1.03 UHBGYFCCKRAEHA-UHFFFAOYSA-N
SW7 SMILES_CANONICAL CACTVS 3.385 Cc1ccc(cc1)C(N)=O
SW7 SMILES CACTVS 3.385 Cc1ccc(cc1)C(N)=O
SW7 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 Cc1ccc(cc1)C(=O)N
SW7 SMILES "OpenEye OEToolkits" 2.0.6 Cc1ccc(cc1)C(=O)N
#
_pdbx_chem_comp_identifier.comp_id SW7
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.6
_pdbx_chem_comp_identifier.identifier 4-methylbenzamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
SW7 'Create component' 2020-03-11 RCSB
SW7 'Initial release' 2020-07-22 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
SW7 C4 C 4.299 0.660 1
SW7 C5 C 3.000 -0.090 2
SW7 C6 C 3.000 -1.590 3
SW7 C7 C 4.299 2.160 4
SW7 N N 3.000 2.910 5
SW7 C C 4.299 -3.840 6
SW7 O O 5.598 2.910 7
SW7 C1 C 4.299 -2.340 8
SW7 C2 C 5.598 -1.590 9
SW7 C3 C 5.598 -0.090 10
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
SW7 O C7 DOUBLE NONE 1
SW7 C7 N SINGLE NONE 2
SW7 C7 C4 SINGLE NONE 3
SW7 C3 C4 DOUBLE NONE 4
SW7 C3 C2 SINGLE NONE 5
SW7 C4 C5 SINGLE NONE 6
SW7 C2 C1 DOUBLE NONE 7
SW7 C5 C6 DOUBLE NONE 8
SW7 C1 C6 SINGLE NONE 9
SW7 C1 C SINGLE NONE 10
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
SW7 MurckoScaffold S1 scaffold c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
SW7 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
SW7 phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
SW7 C4 S1 1
SW7 C5 S1 1
SW7 C6 S1 1
SW7 C1 S1 1
SW7 C2 S1 1
SW7 C3 S1 1
SW7 N F1 1
SW7 C7 F1 1
SW7 O F1 1
SW7 C4 F1 1
SW7 C4 F2 1
SW7 C3 F2 1
SW7 C2 F2 1
SW7 C1 F2 1
SW7 C6 F2 1
SW7 C5 F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id SW7
_pdbe_chem_comp_rdkit_properties.exactmw 135.068
_pdbe_chem_comp_rdkit_properties.amw 135.166
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 2
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 2
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 1
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 10
_pdbe_chem_comp_rdkit_properties.NumAtoms 19
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 2
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.125
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 72.424
_pdbe_chem_comp_rdkit_properties.tpsa 43.090
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.985
_pdbe_chem_comp_rdkit_properties.CrippenMR 39.165
_pdbe_chem_comp_rdkit_properties.chi0v 4.855
_pdbe_chem_comp_rdkit_properties.chi1v 2.428
_pdbe_chem_comp_rdkit_properties.chi2v 0.839
_pdbe_chem_comp_rdkit_properties.chi3v 0.839
_pdbe_chem_comp_rdkit_properties.chi4v 0.419
_pdbe_chem_comp_rdkit_properties.chi0n 13.855
_pdbe_chem_comp_rdkit_properties.chi1n 6.822
_pdbe_chem_comp_rdkit_properties.chi2n 0.839
_pdbe_chem_comp_rdkit_properties.chi3n 0.839
_pdbe_chem_comp_rdkit_properties.chi4n 0.419
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.310
_pdbe_chem_comp_rdkit_properties.kappa1 1.642
_pdbe_chem_comp_rdkit_properties.kappa2 2.519
_pdbe_chem_comp_rdkit_properties.kappa3 1.345
_pdbe_chem_comp_rdkit_properties.Phi 0.414
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
SW7 UniChem ChEMBL CHEMBL3247924
SW7 UniChem PDBe SW7
SW7 UniChem ChEBI 191154
SW7 UniChem ZINC ZINC000000080859
SW7 UniChem fdasrs N0V326V2F5
SW7 UniChem NMRShiftDB 20035882
SW7 UniChem 'EPA CompTox Dashboard' DTXSID2060705
SW7 UniChem BRENDA 133127
SW7 UniChem BRENDA 33072
SW7 UniChem ChemicalBook CB7678671
SW7 UniChem Nikkaji J60.358I
SW7 UniChem eMolecules 492832
SW7 UniChem SureChEMBL SCHEMBL76475
SW7 UniChem 'PubChem TPHARMA' 14769375
SW7 UniChem PubChem 69274
SW7 UniChem Mcule MCULE-7438268859
SW7 UniChem ACTor 619-55-6
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
SW7 C4 -1.099 0.305 -0.153 ETKDGv3 1
SW7 C5 -0.163 1.453 -0.025 ETKDGv3 2
SW7 C6 1.150 1.246 0.130 ETKDGv3 3
SW7 C7 -2.547 0.563 -0.342 ETKDGv3 4
SW7 N -3.535 -0.421 -0.023 ETKDGv3 5
SW7 C 3.157 -0.360 0.380 ETKDGv3 6
SW7 O -2.925 1.684 -0.778 ETKDGv3 7
SW7 C1 1.691 -0.132 0.163 ETKDGv3 8
SW7 C2 0.849 -1.172 0.059 ETKDGv3 9
SW7 C3 -0.601 -0.946 -0.119 ETKDGv3 10
SW7 H1 -0.539 2.468 -0.045 ETKDGv3 11
SW7 H2 1.817 2.094 0.231 ETKDGv3 12
SW7 H3 -4.542 -0.230 -0.222 ETKDGv3 13
SW7 H4 -3.295 -1.298 0.490 ETKDGv3 14
SW7 H5 3.515 -1.209 -0.240 ETKDGv3 15
SW7 H6 3.343 -0.587 1.451 ETKDGv3 16
SW7 H7 3.740 0.542 0.098 ETKDGv3 17
SW7 H8 1.220 -2.189 0.101 ETKDGv3 18
SW7 H9 -1.237 -1.811 -0.247 ETKDGv3 19
#