data_T38
#
_chem_comp.id T38
_chem_comp.name "2'-O-ETHOXYMETHYLENE THYMIDINE 5'-MONOPHOSPHATE"
_chem_comp.type "RNA LINKING"
_chem_comp.pdbx_type ATOMN
_chem_comp.formula "C13 H21 N2 O10 P"
_chem_comp.mon_nstd_parent_comp_id DT
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1998-07-29
_chem_comp.pdbx_modified_date 2018-03-14
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 396.287
_chem_comp.one_letter_code T
_chem_comp.three_letter_code T38
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 410D
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
T38 P P P 0 1 N N N N N N 10.758 4.422 5.368 -4.571 -1.370 -0.084 P T38 1
T38 O1P O1P O 0 1 N N N N N N 11.966 4.955 4.715 -4.308 -1.823 -1.468 O1P T38 2
T38 O2P O2P O 0 1 N N N N N N 9.983 3.597 4.245 -5.701 -0.223 -0.100 O2P T38 3
T38 O3P O3P O 0 1 N Y N N N N 10.874 3.608 6.597 -5.082 -2.614 0.800 O3P T38 4
T38 "O5'" "O5'" O 0 1 N N N N N N 9.770 5.618 5.679 -3.216 -0.779 0.554 "O5'" T38 5
T38 "C5'" "C5'" C 0 1 N N N N N N 9.469 6.568 4.659 -2.458 0.266 -0.060 "C5'" T38 6
T38 "C4'" "C4'" C 0 1 N N R N N N 8.380 7.490 5.121 -1.237 0.585 0.805 "C4'" T38 7
T38 "O4'" "O4'" O 0 1 N N N N N N 7.125 6.763 5.242 -0.337 -0.536 0.813 "O4'" T38 8
T38 "C3'" "C3'" C 0 1 N N R N N N 8.580 8.048 6.517 -0.471 1.782 0.208 "C3'" T38 9
T38 "O3'" "O3'" O 0 1 N N N N N N 9.499 9.126 6.512 -0.418 2.859 1.146 "O3'" T38 10
T38 "C2'" "C2'" C 0 1 N N R N N N 7.170 8.505 6.858 0.949 1.228 -0.062 "C2'" T38 11
T38 "O2'" "O2'" O 0 1 N N N N N N 6.865 9.702 6.164 1.947 2.187 0.294 "O2'" T38 12
T38 "C1'" "C1'" C 0 1 N N R N N N 6.363 7.324 6.311 1.002 -0.001 0.881 "C1'" T38 13
T38 N1 N1 N 0 1 N N N N N N 6.179 6.288 7.342 1.975 -0.983 0.394 N1 T38 14
T38 C2 C2 C 0 1 N N N N N N 5.117 6.419 8.199 1.811 -1.538 -0.820 C2 T38 15
T38 O2 O2 O 0 1 N N N N N N 4.325 7.331 8.123 0.855 -1.219 -1.501 O2 T38 16
T38 N3 N3 N 0 1 N N N N N N 5.019 5.437 9.145 2.689 -2.443 -1.292 N3 T38 17
T38 C4 C4 C 0 1 N N N N N N 5.860 4.362 9.320 3.753 -2.807 -0.549 C4 T38 18
T38 O4 O4 O 0 1 N N N N N N 5.656 3.576 10.243 4.549 -3.625 -0.976 O4 T38 19
T38 C5 C5 C 0 1 N N N N N N 6.941 4.269 8.360 3.938 -2.231 0.730 C5 T38 20
T38 C5M C5M C 0 1 N N N N N N 7.878 3.112 8.420 5.120 -2.621 1.580 C5M T38 21
T38 C6 C6 C 0 1 N N N N N N 7.047 5.227 7.439 3.045 -1.322 1.177 C6 T38 22
T38 "CA'" "CA'" C 0 1 N N N N N N 5.586 10.284 6.378 2.338 3.045 -0.780 "CA'" T38 23
T38 "CB'" "CB'" C 0 1 N N N N N N 5.052 10.183 4.104 1.261 5.053 -0.035 "CB'" T38 24
T38 "OC'" "OC'" O 0 1 N N N N N N 4.682 9.741 5.424 1.312 4.013 -1.013 "OC'" T38 25
T38 "CD'" "CD'" C 0 1 N N N N N N 4.867 9.180 3.093 0.133 6.026 -0.384 "CD'" T38 26
T38 H2P H2P H 0 1 N N N N N N 10.469 3.638 3.430 -5.924 0.121 0.776 H2P T38 27
T38 H3P H3P H 0 1 N N N N N N 11.790 3.521 6.835 -5.896 -3.021 0.474 H3P T38 28
T38 "H5'1" "H5'1" H 0 0 N N N N N N 10.371 7.155 4.431 -2.129 -0.056 -1.048 "H5'1" T38 29
T38 "H5'2" "H5'2" H 0 0 N N N N N N 9.138 6.038 3.754 -3.078 1.157 -0.155 "H5'2" T38 30
T38 "H4'" "H4'" H 0 1 N N N N N N 8.272 8.320 4.408 -1.553 0.815 1.822 "H4'" T38 31
T38 "H3'" "H3'" H 0 1 N N N N N N 8.895 7.249 7.204 -0.938 2.109 -0.721 "H3'" T38 32
T38 HA HA H 0 1 N N N N N N 9.606 9.456 7.396 -1.285 3.207 1.395 HA T38 33
T38 "H2'" "H2'" H 0 1 N N N N N N 7.038 8.600 7.946 1.057 0.925 -1.103 "H2'" T38 34
T38 "H1'" "H1'" H 0 1 N N N N N N 5.387 7.682 5.952 1.242 0.306 1.899 "H1'" T38 35
T38 H3 H3 H 0 1 N N N N N N 4.250 5.508 9.781 2.555 -2.833 -2.170 H3 T38 36
T38 H5M1 H5M1 H 0 0 N N N N N N 8.629 3.206 7.622 5.722 -3.358 1.048 H5M1 T38 37
T38 H5M2 H5M2 H 0 0 N N N N N N 8.382 3.099 9.398 5.725 -1.739 1.789 H5M2 T38 38
T38 H5M3 H5M3 H 0 0 N N N N N N 7.315 2.177 8.285 4.767 -3.050 2.518 H5M3 T38 39
T38 H6 H6 H 0 1 N N N N N N 7.860 5.166 6.730 3.172 -0.868 2.148 H6 T38 40
T38 "HA'1" "HA'1" H 0 0 N N N N N N 5.237 10.051 7.395 3.265 3.555 -0.518 "HA'1" T38 41
T38 "HA'2" "HA'2" H 0 0 N N N N N N 5.648 11.375 6.252 2.490 2.452 -1.681 "HA'2" T38 42
T38 "HB'1" "HB'1" H 0 0 N N N N N N 4.437 11.057 3.844 1.075 4.619 0.947 "HB'1" T38 43
T38 "HB'2" "HB'2" H 0 0 N N N N N N 6.113 10.472 4.118 2.211 5.587 -0.023 "HB'2" T38 44
T38 "HD'1" "HD'1" H 0 0 N N N N N N 5.168 9.584 2.115 0.318 6.460 -1.367 "HD'1" T38 45
T38 "HD'2" "HD'2" H 0 0 N N N N N N 5.484 8.301 3.332 -0.817 5.491 -0.397 "HD'2" T38 46
T38 "HD'3" "HD'3" H 0 0 N N N N N N 3.808 8.886 3.058 0.093 6.819 0.362 "HD'3" T38 47
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
T38 P O1P DOUB N N 1
T38 P O2P SING N N 2
T38 P O3P SING N N 3
T38 P "O5'" SING N N 4
T38 O2P H2P SING N N 5
T38 O3P H3P SING N N 6
T38 "O5'" "C5'" SING N N 7
T38 "C5'" "C4'" SING N N 8
T38 "C5'" "H5'1" SING N N 9
T38 "C5'" "H5'2" SING N N 10
T38 "C4'" "O4'" SING N N 11
T38 "C4'" "C3'" SING N N 12
T38 "C4'" "H4'" SING N N 13
T38 "O4'" "C1'" SING N N 14
T38 "C3'" "O3'" SING N N 15
T38 "C3'" "C2'" SING N N 16
T38 "C3'" "H3'" SING N N 17
T38 "O3'" HA SING N N 18
T38 "C2'" "O2'" SING N N 19
T38 "C2'" "C1'" SING N N 20
T38 "C2'" "H2'" SING N N 21
T38 "O2'" "CA'" SING N N 22
T38 "C1'" N1 SING N N 23
T38 "C1'" "H1'" SING N N 24
T38 N1 C2 SING N N 25
T38 N1 C6 SING N N 26
T38 C2 O2 DOUB N N 27
T38 C2 N3 SING N N 28
T38 N3 C4 SING N N 29
T38 N3 H3 SING N N 30
T38 C4 O4 DOUB N N 31
T38 C4 C5 SING N N 32
T38 C5 C5M SING N N 33
T38 C5 C6 DOUB N N 34
T38 C5M H5M1 SING N N 35
T38 C5M H5M2 SING N N 36
T38 C5M H5M3 SING N N 37
T38 C6 H6 SING N N 38
T38 "CA'" "OC'" SING N N 39
T38 "CA'" "HA'1" SING N N 40
T38 "CA'" "HA'2" SING N N 41
T38 "CB'" "OC'" SING N N 42
T38 "CB'" "CD'" SING N N 43
T38 "CB'" "HB'1" SING N N 44
T38 "CB'" "HB'2" SING N N 45
T38 "CD'" "HD'1" SING N N 46
T38 "CD'" "HD'2" SING N N 47
T38 "CD'" "HD'3" SING N N 48
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
T38 SMILES ACDLabs 12.01 P(=O)(O)(O)OCC1OC(C(C1O)OCOCC)N2C(=O)NC(=O)C(C)=C2
T38 InChI InChI 1.03 InChI=1S/C13H21N2O10P/c1-3-22-6-23-10-9(16)8(5-24-26(19,20)21)25-12(10)15-4-7(2)11(17)14-13(15)18/h4,8-10,12,16H,3,5-6H2,1-2H3,(H,14,17,18)(H2,19,20,21)/t8-,9-,10-,12-/m1/s1
T38 InChIKey InChI 1.03 ZHEHKUXUPODKJV-DNRKLUKYSA-N
T38 SMILES_CANONICAL CACTVS 3.385 CCOCO[C@@H]1[C@H](O)[C@@H](CO[P](O)(O)=O)O[C@H]1N2C=C(C)C(=O)NC2=O
T38 SMILES CACTVS 3.385 CCOCO[CH]1[CH](O)[CH](CO[P](O)(O)=O)O[CH]1N2C=C(C)C(=O)NC2=O
T38 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 CCOCO[C@@H]1[C@@H]([C@H](O[C@H]1N2C=C(C(=O)NC2=O)C)COP(=O)(O)O)O
T38 SMILES "OpenEye OEToolkits" 1.7.6 CCOCOC1C(C(OC1N2C=C(C(=O)NC2=O)C)COP(=O)(O)O)O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
T38 "SYSTEMATIC NAME" ACDLabs 12.01 "2'-O-(ethoxymethyl)-5-methyluridine 5'-(dihydrogen phosphate)"
T38 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(2R,3R,4R,5R)-4-(ethoxymethoxy)-5-[5-methyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
T38 'Create component' 1998-07-29 RCSB
T38 'Modify descriptor' 2011-06-04 RCSB
T38 'Modify parent residue' 2018-03-14 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
T38 P P 14.728 -4.683 1
T38 O1P O 15.610 -5.896 2
T38 O2P O 15.941 -3.801 3
T38 O3P O 13.514 -5.564 4
T38 "O5'" O 13.846 -3.469 5
T38 "C5'" C 12.354 -3.626 6
T38 "C4'" C 11.473 -2.412 7
T38 "O4'" O 11.936 -0.986 8
T38 "C3'" C 9.973 -2.412 9
T38 "O3'" O 9.091 -3.626 10
T38 "C2'" C 9.509 -0.986 11
T38 "O2'" O 8.083 -0.522 12
T38 "C1'" C 10.723 -0.104 13
T38 N1 N 10.723 1.396 14
T38 C2 C 12.022 2.146 15
T38 O2 O 13.321 1.396 16
T38 N3 N 12.022 3.646 17
T38 C4 C 10.723 4.396 18
T38 O4 O 10.723 5.896 19
T38 C5 C 9.424 3.646 20
T38 C5M C 8.125 4.396 21
T38 C6 C 9.424 2.146 22
T38 "CA'" C 6.968 -1.526 23
T38 "CB'" C 4.427 -2.066 24
T38 "OC'" O 5.541 -1.062 25
T38 "CD'" C 3.000 -1.603 26
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
T38 P O1P DOUBLE NONE 1
T38 P O2P SINGLE NONE 2
T38 P O3P SINGLE NONE 3
T38 P "O5'" SINGLE NONE 4
T38 "O5'" "C5'" SINGLE NONE 5
T38 "C4'" "C5'" SINGLE BEGINDASH 6
T38 "C4'" "O4'" SINGLE NONE 7
T38 "C4'" "C3'" SINGLE NONE 8
T38 "O4'" "C1'" SINGLE NONE 9
T38 "C3'" "O3'" SINGLE BEGINWEDGE 10
T38 "C3'" "C2'" SINGLE NONE 11
T38 "C2'" "O2'" SINGLE BEGINWEDGE 12
T38 "C2'" "C1'" SINGLE NONE 13
T38 "O2'" "CA'" SINGLE NONE 14
T38 "C1'" N1 SINGLE BEGINDASH 15
T38 N1 C2 SINGLE NONE 16
T38 N1 C6 SINGLE NONE 17
T38 C2 O2 DOUBLE NONE 18
T38 C2 N3 SINGLE NONE 19
T38 N3 C4 SINGLE NONE 20
T38 C4 O4 DOUBLE NONE 21
T38 C4 C5 SINGLE NONE 22
T38 C5 C5M SINGLE NONE 23
T38 C5 C6 DOUBLE NONE 24
T38 "CA'" "OC'" SINGLE NONE 25
T38 "CB'" "OC'" SINGLE NONE 26
T38 "CB'" "CD'" SINGLE NONE 27
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
T38 MurckoScaffold S1 scaffold 'O=c1ccn([C@H]2CCCO2)c(=O)[nH]1' InChI=1S/C8H10N2O3/c11-6-3-4-10(8(12)9-6)7-2-1-5-13-7/h3-4,7H,1-2,5H2,(H,9,11,12)/t7-/m1/s1 CWWIKVUHBBTKHC-SSDOTTSWSA-N
T38 phosphate F1 fragment O=P(O)(O)O InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4) NBIIXXVUZAFLBC-UHFFFAOYSA-N
T38 pyrimidine F2 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
T38 ribose F3 fragment OCC1OCC(O)C1O InChI=1S/C5H10O4/c6-1-4-5(8)3(7)2-9-4/h3-8H,1-2H2 KZVAAIRBJJYZOW-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
T38 "C4'" S1 1
T38 "O4'" S1 1
T38 "C3'" S1 1
T38 "C2'" S1 1
T38 "C1'" S1 1
T38 N1 S1 1
T38 C2 S1 1
T38 O2 S1 1
T38 N3 S1 1
T38 C4 S1 1
T38 O4 S1 1
T38 C5 S1 1
T38 C6 S1 1
T38 O2P F1 1
T38 P F1 1
T38 O1P F1 1
T38 O3P F1 1
T38 "O5'" F1 1
T38 C5 F2 1
T38 C4 F2 1
T38 N3 F2 1
T38 C2 F2 1
T38 N1 F2 1
T38 C6 F2 1
T38 "C2'" F3 1
T38 "C3'" F3 1
T38 "C4'" F3 1
T38 "O4'" F3 1
T38 "C1'" F3 1
T38 "C5'" F3 1
T38 "O5'" F3 1
T38 "O3'" F3 1
T38 "O2'" F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id T38
_pdbe_chem_comp_rdkit_properties.exactmw 396.093
_pdbe_chem_comp_rdkit_properties.amw 396.289
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 12
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 4
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 13
_pdbe_chem_comp_rdkit_properties.NumHBD 4
_pdbe_chem_comp_rdkit_properties.NumHBA 11
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 26
_pdbe_chem_comp_rdkit_properties.NumAtoms 47
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 13
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.692
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 4
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 176.891
_pdbe_chem_comp_rdkit_properties.tpsa 169.540
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.337
_pdbe_chem_comp_rdkit_properties.CrippenMR 85.289
_pdbe_chem_comp_rdkit_properties.chi0v 12.819
_pdbe_chem_comp_rdkit_properties.chi1v 7.350
_pdbe_chem_comp_rdkit_properties.chi2v 2.636
_pdbe_chem_comp_rdkit_properties.chi3v 2.636
_pdbe_chem_comp_rdkit_properties.chi4v 1.607
_pdbe_chem_comp_rdkit_properties.chi0n 32.924
_pdbe_chem_comp_rdkit_properties.chi1n 16.062
_pdbe_chem_comp_rdkit_properties.chi2n 2.321
_pdbe_chem_comp_rdkit_properties.chi3n 2.321
_pdbe_chem_comp_rdkit_properties.chi4n 1.413
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.370
_pdbe_chem_comp_rdkit_properties.kappa1 6.325
_pdbe_chem_comp_rdkit_properties.kappa2 8.546
_pdbe_chem_comp_rdkit_properties.kappa3 5.085
_pdbe_chem_comp_rdkit_properties.Phi 2.079
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
T38 UniChem PDBe T38
T38 UniChem ZINC ZINC000058638662
T38 UniChem PubChem 49867711
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
T38 P 5.113 -2.042 -0.449 ETKDGv3 1
T38 O1P 4.606 -1.673 -1.825 ETKDGv3 2
T38 O2P 5.146 -3.727 -0.294 ETKDGv3 3
T38 O3P 6.683 -1.441 -0.259 ETKDGv3 4
T38 "O5'" 4.108 -1.355 0.746 ETKDGv3 5
T38 "C5'" 2.836 -1.954 0.656 ETKDGv3 6
T38 "C4'" 1.892 -1.286 1.662 ETKDGv3 7
T38 "O4'" 1.841 0.104 1.402 ETKDGv3 8
T38 "C3'" 0.471 -1.872 1.580 ETKDGv3 9
T38 "O3'" -0.012 -2.222 2.857 ETKDGv3 10
T38 "C2'" -0.332 -0.755 0.949 ETKDGv3 11
T38 "O2'" -1.643 -0.691 1.491 ETKDGv3 12
T38 "C1'" 0.483 0.473 1.332 ETKDGv3 13
T38 N1 0.291 1.567 0.364 ETKDGv3 14
T38 C2 0.902 1.540 -0.943 ETKDGv3 15
T38 O2 1.666 0.597 -1.283 ETKDGv3 16
T38 N3 0.630 2.592 -1.868 ETKDGv3 17
T38 C4 -0.252 3.649 -1.493 ETKDGv3 18
T38 O4 -0.511 4.567 -2.317 ETKDGv3 19
T38 C5 -0.860 3.655 -0.146 ETKDGv3 20
T38 C5M -1.833 4.736 0.237 ETKDGv3 21
T38 C6 -0.603 2.648 0.705 ETKDGv3 22
T38 "CA'" -2.591 -0.381 0.492 ETKDGv3 23
T38 "CB'" -3.861 -1.276 -1.241 ETKDGv3 24
T38 "OC'" -2.827 -1.525 -0.306 ETKDGv3 25
T38 "CD'" -5.188 -1.810 -0.715 ETKDGv3 26
T38 H2P 5.499 -3.888 0.618 ETKDGv3 27
T38 H3P 6.581 -0.456 -0.276 ETKDGv3 28
T38 "H5'1" 2.903 -3.037 0.906 ETKDGv3 29
T38 "H5'2" 2.408 -1.834 -0.365 ETKDGv3 30
T38 "H4'" 2.314 -1.440 2.681 ETKDGv3 31
T38 "H3'" 0.424 -2.778 0.936 ETKDGv3 32
T38 HA 0.033 -1.418 3.439 ETKDGv3 33
T38 "H2'" -0.307 -0.907 -0.159 ETKDGv3 34
T38 "H1'" 0.180 0.813 2.350 ETKDGv3 35
T38 H3 1.066 2.582 -2.818 ETKDGv3 36
T38 H5M1 -1.894 4.852 1.341 ETKDGv3 37
T38 H5M2 -2.839 4.483 -0.156 ETKDGv3 38
T38 H5M3 -1.513 5.712 -0.186 ETKDGv3 39
T38 H6 -1.089 2.641 1.674 ETKDGv3 40
T38 "HA'1" -3.526 -0.072 1.009 ETKDGv3 41
T38 "HA'2" -2.252 0.481 -0.131 ETKDGv3 42
T38 "HB'1" -3.615 -1.822 -2.176 ETKDGv3 43
T38 "HB'2" -3.968 -0.201 -1.522 ETKDGv3 44
T38 "HD'1" -5.491 -1.258 0.199 ETKDGv3 45
T38 "HD'2" -5.095 -2.890 -0.474 ETKDGv3 46
T38 "HD'3" -5.976 -1.681 -1.487 ETKDGv3 47
#