data_T4X
#
_chem_comp.id T4X
_chem_comp.name "3-oxidanyl-5-[4-(trifluoromethyloxy)phenyl]benzoic acid"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C14 H9 F3 O4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2022-12-20
_chem_comp.pdbx_modified_date 2024-01-05
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 298.214
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code T4X
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 8C1M
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
T4X C10 C1 C 0 1 Y N N N N N 35.148 -0.705 -8.472 -2.487 0.683 0.002 C10 T4X 1
T4X C13 C2 C 0 1 Y N N N N N 35.953 1.989 -4.469 1.635 1.747 0.007 C13 T4X 2
T4X C20 C3 C 0 1 Y N N N N N 37.001 -0.186 -4.600 2.237 -0.582 0.006 C20 T4X 3
T4X C21 C4 C 0 1 Y N N N N N 36.266 -0.448 -5.757 0.903 -0.930 0.012 C21 T4X 4
T4X O01 O1 O 0 1 N N N N N N 36.282 -2.339 -10.469 -6.179 1.037 -0.007 O01 T4X 5
T4X C02 C5 C 0 1 N N N N N N 35.105 -2.006 -10.673 -4.876 1.380 -0.007 C02 T4X 6
T4X O03 O2 O 0 1 N N N N N N 34.396 -2.373 -11.636 -4.556 2.551 -0.014 O03 T4X 7
T4X C04 C6 C 0 1 Y N N N N N 34.449 -1.072 -9.621 -3.836 0.330 0.002 C04 T4X 8
T4X C05 C7 C 0 1 Y N N N N N 33.136 -0.618 -9.768 -4.202 -1.017 0.010 C05 T4X 9
T4X C06 C8 C 0 1 Y N N N N N 32.560 0.203 -8.792 -3.226 -2.001 0.019 C06 T4X 10
T4X O07 O3 O 0 1 N N N N N N 31.270 0.654 -8.941 -3.585 -3.312 0.027 O07 T4X 11
T4X C08 C9 C 0 1 Y N N N N N 33.274 0.582 -7.653 -1.885 -1.651 0.019 C08 T4X 12
T4X C09 C10 C 0 1 Y N N N N N 34.592 0.133 -7.502 -1.512 -0.308 0.011 C09 T4X 13
T4X C11 C11 C 0 1 Y N N N N N 35.363 0.475 -6.297 -0.075 0.063 0.004 C11 T4X 14
T4X C12 C12 C 0 1 Y N N N N N 35.226 1.690 -5.622 0.299 1.405 0.007 C12 T4X 15
T4X C14 C13 C 0 1 Y N N N N N 36.844 1.043 -3.954 2.607 0.756 0.004 C14 T4X 16
T4X O15 O4 O 0 1 N N N N N N 37.574 1.314 -2.796 3.922 1.096 -0.002 O15 T4X 17
T4X C16 C14 C 0 1 N N N N N N 38.690 2.163 -2.927 4.869 0.026 -0.005 C16 T4X 18
T4X F17 F1 F 0 1 N N N N N N 39.440 1.773 -3.949 4.689 -0.760 1.138 F17 T4X 19
T4X F18 F2 F 0 1 N N N N N N 39.412 2.047 -1.830 4.679 -0.762 -1.146 F18 T4X 20
T4X F19 F3 F 0 1 N N N N N N 38.341 3.415 -3.080 6.166 0.550 -0.012 F19 T4X 21
T4X H1 H1 H 0 1 N N N N N N 36.150 -1.080 -8.327 -2.200 1.724 -0.008 H1 T4X 22
T4X H2 H2 H 0 1 N N N N N N 35.828 2.943 -3.979 1.926 2.788 0.005 H2 T4X 23
T4X H3 H3 H 0 1 N N N N N N 37.684 -0.925 -4.208 2.995 -1.351 0.004 H3 T4X 24
T4X H4 H4 H 0 1 N N N N N N 36.399 -1.398 -6.254 0.616 -1.972 0.014 H4 T4X 25
T4X H5 H5 H 0 1 N N N N N N 36.571 -2.922 -11.161 -6.822 1.758 -0.013 H5 T4X 26
T4X H6 H6 H 0 1 N N N N N N 32.563 -0.902 -10.638 -5.246 -1.293 0.010 H6 T4X 27
T4X H7 H7 H 0 1 N N N N N N 31.035 1.195 -8.196 -3.687 -3.697 -0.854 H7 T4X 28
T4X H8 H8 H 0 1 N N N N N N 32.818 1.210 -6.902 -1.127 -2.421 0.026 H8 T4X 29
T4X H9 H9 H 0 1 N N N N N N 34.533 2.424 -6.006 -0.456 2.177 0.010 H9 T4X 30
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
T4X O03 C02 DOUB N N 1
T4X C02 O01 SING N N 2
T4X C02 C04 SING N N 3
T4X C05 C04 DOUB Y N 4
T4X C05 C06 SING Y N 5
T4X C04 C10 SING Y N 6
T4X O07 C06 SING N N 7
T4X C06 C08 DOUB Y N 8
T4X C10 C09 DOUB Y N 9
T4X C08 C09 SING Y N 10
T4X C09 C11 SING N N 11
T4X C11 C21 DOUB Y N 12
T4X C11 C12 SING Y N 13
T4X C21 C20 SING Y N 14
T4X C12 C13 DOUB Y N 15
T4X C20 C14 DOUB Y N 16
T4X C13 C14 SING Y N 17
T4X C14 O15 SING N N 18
T4X F17 C16 SING N N 19
T4X F19 C16 SING N N 20
T4X C16 O15 SING N N 21
T4X C16 F18 SING N N 22
T4X C10 H1 SING N N 23
T4X C13 H2 SING N N 24
T4X C20 H3 SING N N 25
T4X C21 H4 SING N N 26
T4X O01 H5 SING N N 27
T4X C05 H6 SING N N 28
T4X O07 H7 SING N N 29
T4X C08 H8 SING N N 30
T4X C12 H9 SING N N 31
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
T4X InChI InChI 1.06 "InChI=1S/C14H9F3O4/c15-14(16,17)21-12-3-1-8(2-4-12)9-5-10(13(19)20)7-11(18)6-9/h1-7,18H,(H,19,20)"
T4X InChIKey InChI 1.06 GTYQGKSQYCEYBH-UHFFFAOYSA-N
T4X SMILES_CANONICAL CACTVS 3.385 "OC(=O)c1cc(O)cc(c1)c2ccc(OC(F)(F)F)cc2"
T4X SMILES CACTVS 3.385 "OC(=O)c1cc(O)cc(c1)c2ccc(OC(F)(F)F)cc2"
T4X SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1c2cc(cc(c2)O)C(=O)O)OC(F)(F)F"
T4X SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1c2cc(cc(c2)O)C(=O)O)OC(F)(F)F"
#
_pdbx_chem_comp_identifier.comp_id T4X
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "3-oxidanyl-5-[4-(trifluoromethyloxy)phenyl]benzoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
T4X 'Create component' 2022-12-20 PDBE
T4X 'Initial release' 2024-01-10 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
T4X C10 C 5.598 -2.292 1
T4X C13 C 5.598 2.208 2
T4X C20 C 8.196 2.208 3
T4X C21 C 8.196 0.708 4
T4X O01 O 3.000 -3.792 5
T4X C02 C 4.299 -4.542 6
T4X O03 O 4.299 -6.042 7
T4X C04 C 5.598 -3.792 8
T4X C05 C 6.897 -4.542 9
T4X C06 C 8.196 -3.792 10
T4X O07 O 9.495 -4.542 11
T4X C08 C 8.196 -2.292 12
T4X C09 C 6.897 -1.542 13
T4X C11 C 6.897 -0.042 14
T4X C12 C 5.598 0.708 15
T4X C14 C 6.897 2.958 16
T4X O15 O 6.897 4.458 17
T4X C16 C 8.196 5.208 18
T4X F17 F 9.495 5.958 19
T4X F18 F 8.946 3.909 20
T4X F19 F 7.446 6.507 21
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
T4X O03 C02 DOUBLE NONE 1
T4X C02 O01 SINGLE NONE 2
T4X C02 C04 SINGLE NONE 3
T4X C05 C04 SINGLE NONE 4
T4X C05 C06 DOUBLE NONE 5
T4X C04 C10 DOUBLE NONE 6
T4X O07 C06 SINGLE NONE 7
T4X C06 C08 SINGLE NONE 8
T4X C10 C09 SINGLE NONE 9
T4X C08 C09 DOUBLE NONE 10
T4X C09 C11 SINGLE NONE 11
T4X C11 C21 DOUBLE NONE 12
T4X C11 C12 SINGLE NONE 13
T4X C21 C20 SINGLE NONE 14
T4X C12 C13 DOUBLE NONE 15
T4X C20 C14 DOUBLE NONE 16
T4X C13 C14 SINGLE NONE 17
T4X C14 O15 SINGLE NONE 18
T4X F17 C16 SINGLE NONE 19
T4X F19 C16 SINGLE NONE 20
T4X C16 O15 SINGLE NONE 21
T4X C16 F18 SINGLE NONE 22
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
T4X MurckoScaffold S1 scaffold c1ccc(-c2ccccc2)cc1 InChI=1S/C12H10/c1-3-7-11(8-4-1)12-9-5-2-6-10-12/h1-10H ZUOUZKKEUPVFJK-UHFFFAOYSA-N
T4X phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
T4X C10 S1 1
T4X C13 S1 1
T4X C20 S1 1
T4X C21 S1 1
T4X C04 S1 1
T4X C05 S1 1
T4X C06 S1 1
T4X C08 S1 1
T4X C09 S1 1
T4X C11 S1 1
T4X C12 S1 1
T4X C14 S1 1
T4X C10 F1 1
T4X C04 F1 1
T4X C05 F1 1
T4X C06 F1 1
T4X C08 F1 1
T4X C09 F1 1
T4X C13 F1 2
T4X C12 F1 2
T4X C11 F1 2
T4X C21 F1 2
T4X C20 F1 2
T4X C14 F1 2
#
_pdbe_chem_comp_rdkit_properties.comp_id T4X
_pdbe_chem_comp_rdkit_properties.exactmw 298.045
_pdbe_chem_comp_rdkit_properties.amw 298.216
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 4
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 4
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 21
_pdbe_chem_comp_rdkit_properties.NumAtoms 30
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 7
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.071
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 129.397
_pdbe_chem_comp_rdkit_properties.tpsa 66.760
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.296
_pdbe_chem_comp_rdkit_properties.CrippenMR 64.377
_pdbe_chem_comp_rdkit_properties.chi0v 9.767
_pdbe_chem_comp_rdkit_properties.chi1v 5.088
_pdbe_chem_comp_rdkit_properties.chi2v 2.001
_pdbe_chem_comp_rdkit_properties.chi3v 2.001
_pdbe_chem_comp_rdkit_properties.chi4v 1.266
_pdbe_chem_comp_rdkit_properties.chi0n 18.767
_pdbe_chem_comp_rdkit_properties.chi1n 9.404
_pdbe_chem_comp_rdkit_properties.chi2n 2.001
_pdbe_chem_comp_rdkit_properties.chi3n 2.001
_pdbe_chem_comp_rdkit_properties.chi4n 1.266
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.700
_pdbe_chem_comp_rdkit_properties.kappa1 6.839
_pdbe_chem_comp_rdkit_properties.kappa2 5.354
_pdbe_chem_comp_rdkit_properties.kappa3 3.882
_pdbe_chem_comp_rdkit_properties.Phi 1.744
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
T4X UniChem PDBe T4X
T4X UniChem PubChem 53228257
T4X UniChem 'EPA CompTox Dashboard' DTXSID00691790
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
T4X C10 -1.846 0.824 -0.188 ETKDGv3 1
T4X C13 2.490 1.462 0.046 ETKDGv3 2
T4X C20 2.786 -0.915 -0.404 ETKDGv3 3
T4X C21 1.335 -1.093 -0.184 ETKDGv3 4
T4X O01 -5.485 1.574 -0.316 ETKDGv3 5
T4X C02 -4.116 1.721 -0.522 ETKDGv3 6
T4X O03 -3.692 2.724 -1.159 ETKDGv3 7
T4X C04 -3.175 0.707 0.004 ETKDGv3 8
T4X C05 -3.696 -0.464 0.752 ETKDGv3 9
T4X C06 -2.856 -1.394 1.229 ETKDGv3 10
T4X O07 -3.338 -2.497 1.932 ETKDGv3 11
T4X C08 -1.402 -1.255 1.014 ETKDGv3 12
T4X C09 -0.907 -0.201 0.338 ETKDGv3 13
T4X C11 0.554 -0.041 0.128 ETKDGv3 14
T4X C12 1.177 1.303 0.246 ETKDGv3 15
T4X C14 3.346 0.306 -0.297 ETKDGv3 16
T4X O15 4.718 0.539 -0.496 ETKDGv3 17
T4X C16 5.689 -0.451 -0.830 ETKDGv3 18
T4X F17 6.925 0.154 -0.943 ETKDGv3 19
T4X F18 5.752 -1.412 0.163 ETKDGv3 20
T4X F19 5.370 -1.042 -2.039 ETKDGv3 21
T4X H1 -1.448 1.662 -0.746 ETKDGv3 22
T4X H2 2.933 2.446 0.140 ETKDGv3 23
T4X H3 3.373 -1.787 -0.654 ETKDGv3 24
T4X H4 0.914 -2.083 -0.303 ETKDGv3 25
T4X H5 -6.141 2.259 -0.670 ETKDGv3 26
T4X H6 -4.761 -0.572 0.914 ETKDGv3 27
T4X H7 -4.328 -2.631 2.103 ETKDGv3 28
T4X H8 -0.743 -2.007 1.431 ETKDGv3 29
T4X H9 0.575 2.162 0.512 ETKDGv3 30
#