data_T5P
#
_chem_comp.id T5P
_chem_comp.name
"3-{2,6,8-TRIOXO-9-[(2S,3S,4R)-2,3,4,5-TETRAHYDROXYPENTYL]-1,2,3,6,8,9-HEXAHYDRO-7H-PURIN-7-YL}PROPYL DIHYDROGEN PHOSPHATE"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C13 H21 N4 O11 P"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2004-06-18
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 440.300
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code T5P
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code ?
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
T5P O33 O33 O 0 1 N N N N N N 8.437 3.414 17.919 -0.240 -1.026 -7.077 O33 T5P 1
T5P P P P 0 1 N N N N N N 9.126 4.272 18.964 -1.253 0.142 -6.629 P T5P 2
T5P O31 O31 O 0 1 N N N N N N 9.859 3.526 20.025 -1.297 1.280 -7.767 O31 T5P 3
T5P O32 O32 O 0 1 N N N N N N 9.903 5.423 18.469 -2.608 -0.423 -6.445 O32 T5P 4
T5P O27 O27 O 0 1 N N N N N N 7.861 4.925 19.736 -0.749 0.787 -5.243 O27 T5P 5
T5P C17 C17 C 0 1 N N N N N N 7.123 6.008 19.155 -0.731 -0.266 -4.278 C17 T5P 6
T5P C16 C16 C 0 1 N N N N N N 6.020 6.413 20.114 -0.258 0.283 -2.931 C16 T5P 7
T5P C15 C15 C 0 1 N N N N N N 6.714 6.857 21.373 -0.239 -0.845 -1.898 C15 T5P 8
T5P N5 N5 N 0 1 Y N N N N N 5.880 7.295 22.486 0.213 -0.319 -0.608 N5 T5P 9
T5P C6 C6 C 0 1 Y N N N N N 5.828 6.718 23.718 -0.569 0.195 0.360 C6 T5P 10
T5P O6 O6 O 0 1 N N N N N N 6.494 5.650 24.020 -1.780 0.301 0.309 O6 T5P 11
T5P C9 C9 C 0 1 Y N N N N N 5.074 8.357 22.573 1.537 -0.259 -0.159 C9 T5P 12
T5P C4 C4 C 0 1 Y N N N N N 4.559 9.498 21.765 2.771 -0.641 -0.722 C4 T5P 13
T5P O4 O4 O 0 1 N N N N N N 4.921 9.686 20.578 2.814 -1.145 -1.831 O4 T5P 14
T5P N3 N3 N 0 1 Y N N N N N 3.709 10.366 22.331 3.905 -0.449 -0.017 N3 T5P 15
T5P C2 C2 C 0 1 Y N N N N N 3.258 10.273 23.601 3.865 0.106 1.206 C2 T5P 16
T5P O2 O2 O 0 1 N N N N N N 2.455 11.108 24.071 4.901 0.272 1.821 O2 T5P 17
T5P C8 C8 C 0 1 Y N N N N N 4.552 8.318 23.932 1.515 0.304 1.086 C8 T5P 18
T5P N1 N1 N 0 1 Y N N N N N 3.647 9.303 24.410 2.699 0.483 1.764 N1 T5P 19
T5P N7 N7 N 0 1 Y N N N N N 5.009 7.278 24.620 0.206 0.573 1.394 N7 T5P 20
T5P C10 C10 C 0 1 N N N N N N 4.828 6.945 26.016 -0.268 1.179 2.640 C10 T5P 21
T5P C11 C11 C 0 1 N N S N N N 3.477 6.470 26.496 -0.572 0.078 3.659 C11 T5P 22
T5P O19 O19 O 0 1 N N N N N N 2.463 7.432 26.285 -1.580 -0.789 3.136 O19 T5P 23
T5P C12 C12 C 0 1 N N S N N N 3.607 6.192 27.993 -1.068 0.711 4.960 C12 T5P 24
T5P O21 O21 O 0 1 N N N N N N 4.135 7.309 28.692 -0.060 1.578 5.483 O21 T5P 25
T5P C13 C13 C 0 1 N N R N N N 4.490 4.997 28.299 -1.372 -0.389 5.979 C13 T5P 26
T5P O23 O23 O 0 1 N N N N N N 4.079 3.889 27.518 -2.380 -1.257 5.456 O23 T5P 27
T5P C14 C14 C 0 1 N N N N N N 4.393 4.647 29.779 -1.869 0.243 7.280 C14 T5P 28
T5P O26 O26 O 0 1 N N N N N N 3.042 4.440 30.144 -2.152 -0.784 8.232 O26 T5P 29
T5P H33 H33 H 0 1 N N N N N N 7.970 3.890 17.242 0.628 -0.615 -7.186 H33 T5P 30
T5P H31 H31 H 0 1 N N N N N N 10.290 4.063 20.679 -1.604 0.852 -8.578 H31 T5P 31
T5P H171 1H17 H 0 0 N N N N N N 6.736 5.764 18.138 -0.051 -1.051 -4.610 H171 T5P 32
T5P H172 2H17 H 0 0 N N N N N N 7.776 6.865 18.869 -1.735 -0.677 -4.171 H172 T5P 33
T5P H161 1H16 H 0 0 N N N N N N 5.259 5.615 20.281 -0.938 1.067 -2.599 H161 T5P 34
T5P H162 2H16 H 0 0 N N N N N N 5.323 7.176 19.696 0.745 0.693 -3.039 H162 T5P 35
T5P H151 1H15 H 0 0 N N N N N N 7.448 7.659 21.125 0.440 -1.630 -2.230 H151 T5P 36
T5P H152 2H15 H 0 0 N N N N N N 7.397 6.048 21.722 -1.243 -1.256 -1.791 H152 T5P 37
T5P H3 H3 H 0 1 N N N N N N 3.381 11.149 21.765 4.758 -0.711 -0.397 H3 T5P 38
T5P H1 H1 H 0 1 N N N N N N 3.301 9.262 25.368 2.693 0.882 2.648 H1 T5P 39
T5P H101 1H10 H 0 0 N N N N N N 5.139 7.819 26.634 -1.174 1.752 2.443 H101 T5P 40
T5P H102 2H10 H 0 0 N N N N N N 5.595 6.189 26.304 0.500 1.841 3.039 H102 T5P 41
T5P H11 H11 H 0 1 N N N N N N 3.207 5.526 25.967 0.333 -0.494 3.856 H11 T5P 42
T5P H19 H19 H 0 1 N N N N N N 1.613 7.133 26.587 -2.363 -0.243 2.976 H19 T5P 43
T5P H12 H12 H 0 1 N N N N N N 2.589 5.982 28.396 -1.975 1.284 4.763 H12 T5P 44
T5P H21 H21 H 0 1 N N N N N N 4.216 7.136 29.623 0.721 1.033 5.643 H21 T5P 45
T5P H13 H13 H 0 1 N N N N N N 5.547 5.249 28.050 -0.466 -0.962 6.176 H13 T5P 46
T5P H23 H23 H 0 1 N N N N N N 4.632 3.141 27.710 -3.163 -0.711 5.296 H23 T5P 47
T5P H141 1H14 H 0 0 N N N N N N 4.885 5.414 30.422 -2.775 0.816 7.083 H141 T5P 48
T5P H142 2H14 H 0 0 N N N N N N 5.035 3.774 30.044 -1.100 0.905 7.679 H142 T5P 49
T5P H26 H26 H 0 1 N N N N N N 2.981 4.222 31.067 -2.461 -0.344 9.035 H26 T5P 50
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
T5P O33 P SING N N 1
T5P O33 H33 SING N N 2
T5P P O31 SING N N 3
T5P P O32 DOUB N N 4
T5P P O27 SING N N 5
T5P O31 H31 SING N N 6
T5P O27 C17 SING N N 7
T5P C17 C16 SING N N 8
T5P C17 H171 SING N N 9
T5P C17 H172 SING N N 10
T5P C16 C15 SING N N 11
T5P C16 H161 SING N N 12
T5P C16 H162 SING N N 13
T5P C15 N5 SING N N 14
T5P C15 H151 SING N N 15
T5P C15 H152 SING N N 16
T5P N5 C6 SING Y N 17
T5P N5 C9 SING Y N 18
T5P C6 O6 DOUB N N 19
T5P C6 N7 SING Y N 20
T5P C9 C4 SING Y N 21
T5P C9 C8 DOUB Y N 22
T5P C4 O4 DOUB N N 23
T5P C4 N3 SING Y N 24
T5P N3 C2 SING Y N 25
T5P N3 H3 SING N N 26
T5P C2 O2 DOUB N N 27
T5P C2 N1 SING Y N 28
T5P C8 N1 SING Y N 29
T5P C8 N7 SING Y N 30
T5P N1 H1 SING N N 31
T5P N7 C10 SING N N 32
T5P C10 C11 SING N N 33
T5P C10 H101 SING N N 34
T5P C10 H102 SING N N 35
T5P C11 O19 SING N N 36
T5P C11 C12 SING N N 37
T5P C11 H11 SING N N 38
T5P O19 H19 SING N N 39
T5P C12 O21 SING N N 40
T5P C12 C13 SING N N 41
T5P C12 H12 SING N N 42
T5P O21 H21 SING N N 43
T5P C13 O23 SING N N 44
T5P C13 C14 SING N N 45
T5P C13 H13 SING N N 46
T5P O23 H23 SING N N 47
T5P C14 O26 SING N N 48
T5P C14 H141 SING N N 49
T5P C14 H142 SING N N 50
T5P O26 H26 SING N N 51
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
T5P SMILES ACDLabs 10.04 O=C1C2=C(NC(=O)N1)N(C(=O)N2CCCOP(=O)(O)O)CC(O)C(O)C(O)CO
T5P SMILES_CANONICAL CACTVS 3.341 OC[C@@H](O)[C@@H](O)[C@@H](O)CN1C(=O)N(CCCO[P](O)(O)=O)C2=C1NC(=O)NC2=O
T5P SMILES CACTVS 3.341 OC[CH](O)[CH](O)[CH](O)CN1C(=O)N(CCCO[P](O)(O)=O)C2=C1NC(=O)NC2=O
T5P SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C(CN1C2=C(NC(=O)NC2=O)N(C1=O)C[C@@H]([C@@H]([C@@H](CO)O)O)O)COP(=O)(O)O
T5P SMILES "OpenEye OEToolkits" 1.5.0 C(CN1C2=C(NC(=O)NC2=O)N(C1=O)CC(C(C(CO)O)O)O)COP(=O)(O)O
T5P InChI InChI 1.03 InChI=1S/C13H21N4O11P/c18-5-7(20)9(21)6(19)4-17-10-8(11(22)15-12(23)14-10)16(13(17)24)2-1-3-28-29(25,26)27/h6-7,9,18-21H,1-5H2,(H2,25,26,27)(H2,14,15,22,23)/t6-,7+,9-/m0/s1
T5P InChIKey InChI 1.03 KPHFGOGGKPGLTM-OOZYFLPDSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
T5P "SYSTEMATIC NAME" ACDLabs 10.04 1-deoxy-1-{2,6,8-trioxo-7-[3-(phosphonooxy)propyl]-1,2,3,6,7,8-hexahydro-9H-purin-9-yl}-D-ribitol
T5P "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "3-[2,6,8-trioxo-9-[(2S,3S,4R)-2,3,4,5-tetrahydroxypentyl]-3H-purin-7-yl]propyl dihydrogen phosphate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
T5P 'Create component' 2004-06-18 PDBJ
T5P 'Modify descriptor' 2011-06-04 RCSB
#
_pdbe_chem_comp_drugbank_details.comp_id T5P
_pdbe_chem_comp_drugbank_details.drugbank_id DB02290
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name
'3-{2,6,8-trioxo-9-[(2S,3S,4R)-2,3,4,5-tetrahydroxypentyl]-1,2,3,6,8,9-hexahydro-7H-purin-7-Yl}propyl dihydrogen phosphate'
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number ?
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
_pdbe_chem_comp_drugbank_classification.comp_id T5P
_pdbe_chem_comp_drugbank_classification.drugbank_id DB02290
_pdbe_chem_comp_drugbank_classification.parent Xanthines
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class Imidazopyrimidines
_pdbe_chem_comp_drugbank_classification.superclass 'Organoheterocyclic compounds'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as xanthines. These are purine derivatives with a ketone group conjugated at carbons 2 and 6 of the purine moiety.'
#
_pdbe_chem_comp_drugbank_targets.comp_id T5P
_pdbe_chem_comp_drugbank_targets.drugbank_id DB02290
_pdbe_chem_comp_drugbank_targets.name '6,7-dimethyl-8-ribityllumazine synthase'
_pdbe_chem_comp_drugbank_targets.organism 'Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)'
_pdbe_chem_comp_drugbank_targets.uniprot_id P9WHE9
_pdbe_chem_comp_drugbank_targets.pharmacologically_active unknown
_pdbe_chem_comp_drugbank_targets.ordinal 1
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.09.6 'Core functionality.'
pdbeccdutils 0.8.6 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
T5P O33 O 13.116 -7.317 1
T5P P P 12.650 -5.891 2
T5P O31 O 14.076 -5.425 3
T5P O32 O 11.224 -6.357 4
T5P O27 O 12.184 -4.465 5
T5P C17 C 10.716 -4.156 6
T5P C16 C 10.250 -2.730 7
T5P C15 C 8.783 -2.421 8
T5P N5 N 8.316 -0.995 9
T5P C6 C 9.192 0.212 10
T5P O6 O 10.692 0.212 11
T5P C9 C 6.897 -0.538 12
T5P C4 C 5.598 -1.288 13
T5P O4 O 5.598 -2.788 14
T5P N3 N 4.299 -0.538 15
T5P C2 C 4.299 0.962 16
T5P O2 O 3.000 1.712 17
T5P C8 C 6.897 0.962 18
T5P N1 N 5.598 1.712 19
T5P N7 N 8.316 1.419 20
T5P C10 C 8.783 2.845 21
T5P C11 C 10.250 3.154 22
T5P O19 O 11.252 2.038 23
T5P C12 C 10.716 4.580 24
T5P O21 O 9.714 5.697 25
T5P C13 C 12.184 4.889 26
T5P O23 O 13.186 3.773 27
T5P C14 C 12.650 6.315 28
T5P O26 O 14.118 6.625 29
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
T5P O33 P SINGLE NONE 1
T5P P O31 SINGLE NONE 2
T5P P O32 DOUBLE NONE 3
T5P P O27 SINGLE NONE 4
T5P O27 C17 SINGLE NONE 5
T5P C17 C16 SINGLE NONE 6
T5P C16 C15 SINGLE NONE 7
T5P C15 N5 SINGLE NONE 8
T5P N5 C6 SINGLE NONE 9
T5P N5 C9 SINGLE NONE 10
T5P C6 O6 DOUBLE NONE 11
T5P C6 N7 SINGLE NONE 12
T5P C9 C4 SINGLE NONE 13
T5P C9 C8 DOUBLE NONE 14
T5P C4 O4 DOUBLE NONE 15
T5P C4 N3 SINGLE NONE 16
T5P N3 C2 SINGLE NONE 17
T5P C2 O2 DOUBLE NONE 18
T5P C2 N1 SINGLE NONE 19
T5P C8 N1 SINGLE NONE 20
T5P C8 N7 SINGLE NONE 21
T5P N7 C10 SINGLE NONE 22
T5P C10 C11 SINGLE NONE 23
T5P C11 O19 SINGLE BEGINWEDGE 24
T5P C11 C12 SINGLE NONE 25
T5P C12 O21 SINGLE BEGINDASH 26
T5P C12 C13 SINGLE NONE 27
T5P C13 O23 SINGLE BEGINWEDGE 28
T5P C13 C14 SINGLE NONE 29
T5P C14 O26 SINGLE NONE 30
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
T5P MurckoScaffold S1 scaffold 'O=c1[nH]c(=O)c2[nH]c(=O)[nH]c2[nH]1' InChI=1S/C5H4N4O3/c10-3-1-2(7-4(11)6-1)8-5(12)9-3/h(H4,6,7,8,9,10,11,12) LEHOTFFKMJEONL-UHFFFAOYSA-N
T5P imidazole F1 fragment 'c1c[nH]cn1' InChI=1S/C3H4N2/c1-2-5-3-4-1/h1-3H,(H,4,5) RAXXELZNTBOGNW-UHFFFAOYSA-N
T5P phosphate F2 fragment O=P(O)(O)O InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4) NBIIXXVUZAFLBC-UHFFFAOYSA-N
T5P purine F3 fragment 'c1ncc2[nH]cnc2n1' InChI=1S/C5H4N4/c1-4-5(8-2-6-1)9-3-7-4/h1-3H,(H,6,7,8,9) KDCGOANMDULRCW-UHFFFAOYSA-N
T5P pyrimidine F4 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
T5P N5 S1 1
T5P C6 S1 1
T5P O6 S1 1
T5P C9 S1 1
T5P C4 S1 1
T5P O4 S1 1
T5P N3 S1 1
T5P C2 S1 1
T5P O2 S1 1
T5P C8 S1 1
T5P N1 S1 1
T5P N7 S1 1
T5P C9 F1 1
T5P C8 F1 1
T5P N7 F1 1
T5P C6 F1 1
T5P N5 F1 1
T5P O33 F2 1
T5P P F2 1
T5P O32 F2 1
T5P O31 F2 1
T5P O27 F2 1
T5P N5 F3 1
T5P C6 F3 1
T5P N7 F3 1
T5P C8 F3 1
T5P C9 F3 1
T5P C4 F3 1
T5P N3 F3 1
T5P C2 F3 1
T5P N1 F3 1
T5P C9 F4 1
T5P C4 F4 1
T5P N3 F4 1
T5P C2 F4 1
T5P N1 F4 1
T5P C8 F4 1
#
_pdbe_chem_comp_rdkit_properties.comp_id T5P
_pdbe_chem_comp_rdkit_properties.exactmw 440.094
_pdbe_chem_comp_rdkit_properties.amw 440.302
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 15
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 8
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 16
_pdbe_chem_comp_rdkit_properties.NumHBD 8
_pdbe_chem_comp_rdkit_properties.NumHBA 13
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 29
_pdbe_chem_comp_rdkit_properties.NumAtoms 50
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 16
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.615
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 3
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 190.374
_pdbe_chem_comp_rdkit_properties.tpsa 240.330
_pdbe_chem_comp_rdkit_properties.CrippenClogP -1.975
_pdbe_chem_comp_rdkit_properties.CrippenMR 93.277
_pdbe_chem_comp_rdkit_properties.chi0v 14.121
_pdbe_chem_comp_rdkit_properties.chi1v 8.060
_pdbe_chem_comp_rdkit_properties.chi2v 3.041
_pdbe_chem_comp_rdkit_properties.chi3v 3.041
_pdbe_chem_comp_rdkit_properties.chi4v 1.863
_pdbe_chem_comp_rdkit_properties.chi0n 34.227
_pdbe_chem_comp_rdkit_properties.chi1n 16.443
_pdbe_chem_comp_rdkit_properties.chi2n 2.726
_pdbe_chem_comp_rdkit_properties.chi3n 2.726
_pdbe_chem_comp_rdkit_properties.chi4n 1.706
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.100
_pdbe_chem_comp_rdkit_properties.kappa1 7.546
_pdbe_chem_comp_rdkit_properties.kappa2 9.147
_pdbe_chem_comp_rdkit_properties.kappa3 5.492
_pdbe_chem_comp_rdkit_properties.Phi 2.380
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
T5P UniChem ChEMBL CHEMBL477508
T5P UniChem DrugBank DB02290
T5P UniChem ZINC ZINC000012501842
T5P UniChem SureChEMBL SCHEMBL4998291
T5P UniChem Nikkaji J2.010.871A
T5P UniChem BRENDA 151297
T5P UniChem BRENDA 151304
T5P UniChem 'Probes And Drugs' PD042675
T5P UniChem PubChem 657025
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
T5P O33 4.222 -2.096 -0.481 ETKDGv3 1
T5P P 2.999 -2.185 0.686 ETKDGv3 2
T5P O31 3.357 -3.439 1.765 ETKDGv3 3
T5P O32 1.680 -2.479 0.008 ETKDGv3 4
T5P O27 2.906 -0.718 1.551 ETKDGv3 5
T5P C17 2.581 0.310 0.647 ETKDGv3 6
T5P C16 2.552 1.640 1.401 ETKDGv3 7
T5P C15 2.321 2.846 0.476 ETKDGv3 8
T5P N5 0.997 2.805 -0.148 ETKDGv3 9
T5P C6 -0.240 2.915 0.554 ETKDGv3 10
T5P O6 -0.347 3.412 1.707 ETKDGv3 11
T5P C9 0.604 2.143 -1.357 ETKDGv3 12
T5P C4 1.459 1.709 -2.477 ETKDGv3 13
T5P O4 2.695 1.944 -2.492 ETKDGv3 14
T5P N3 0.846 1.015 -3.572 ETKDGv3 15
T5P C2 -0.572 0.788 -3.566 ETKDGv3 16
T5P O2 -1.122 0.188 -4.527 ETKDGv3 17
T5P C8 -0.702 1.911 -1.370 ETKDGv3 18
T5P N1 -1.360 1.252 -2.460 ETKDGv3 19
T5P N7 -1.336 2.369 -0.176 ETKDGv3 20
T5P C10 -2.614 1.925 0.386 ETKDGv3 21
T5P C11 -2.489 0.594 1.168 ETKDGv3 22
T5P O19 -1.460 0.690 2.120 ETKDGv3 23
T5P C12 -2.244 -0.628 0.244 ETKDGv3 24
T5P O21 -3.253 -0.706 -0.734 ETKDGv3 25
T5P C13 -2.158 -1.958 1.042 ETKDGv3 26
T5P O23 -0.987 -1.965 1.819 ETKDGv3 27
T5P C14 -2.158 -3.189 0.118 ETKDGv3 28
T5P O26 -1.092 -3.121 -0.789 ETKDGv3 29
T5P H33 5.041 -1.876 0.031 ETKDGv3 30
T5P H31 2.644 -3.393 2.450 ETKDGv3 31
T5P H171 1.575 0.127 0.209 ETKDGv3 32
T5P H172 3.344 0.381 -0.162 ETKDGv3 33
T5P H161 1.759 1.606 2.179 ETKDGv3 34
T5P H162 3.526 1.779 1.918 ETKDGv3 35
T5P H151 2.397 3.773 1.084 ETKDGv3 36
T5P H152 3.119 2.905 -0.290 ETKDGv3 37
T5P H3 1.427 0.685 -4.376 ETKDGv3 38
T5P H1 -2.396 1.127 -2.464 ETKDGv3 39
T5P H101 -3.372 1.836 -0.420 ETKDGv3 40
T5P H102 -2.988 2.709 1.079 ETKDGv3 41
T5P H11 -3.458 0.425 1.695 ETKDGv3 42
T5P H19 -1.807 1.247 2.865 ETKDGv3 43
T5P H12 -1.273 -0.490 -0.277 ETKDGv3 44
T5P H21 -4.117 -0.841 -0.263 ETKDGv3 45
T5P H13 -3.051 -2.028 1.706 ETKDGv3 46
T5P H23 -1.119 -2.640 2.535 ETKDGv3 47
T5P H141 -3.122 -3.250 -0.434 ETKDGv3 48
T5P H142 -2.063 -4.109 0.737 ETKDGv3 49
T5P H26 -1.152 -3.939 -1.347 ETKDGv3 50
#