data_T8S
#
_chem_comp.id T8S
_chem_comp.name 1-acetyl-N-methyl-N-(propan-2-yl)piperidine-4-carboxamide
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C12 H22 N2 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2020-03-16
_chem_comp.pdbx_modified_date 2020-03-20
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 226.315
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code T8S
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5RFY
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
T8S N1 N1 N 0 1 N N N N N N 6.859 -4.372 21.362 -2.682 0.136 -0.321 N1 T8S 1
T8S C4 C1 C 0 1 N N N N N N 6.086 -3.487 25.472 1.449 -0.698 0.073 C4 T8S 2
T8S C5 C2 C 0 1 N N N N N N 6.740 -4.061 24.227 0.090 -0.396 -0.503 C5 T8S 3
T8S C6 C3 C 0 1 N N N N N N 5.801 -5.001 23.468 -0.888 -1.505 -0.108 C6 T8S 4
T8S C7 C4 C 0 1 N N N N N N 6.465 -5.502 22.210 -2.260 -1.213 -0.724 C7 T8S 5
T8S C8 C5 C 0 1 N N N N N N 7.793 -3.455 22.024 -1.775 1.264 -0.572 C8 T8S 6
T8S C10 C6 C 0 1 N N N N N N 6.372 -4.215 20.110 -3.881 0.335 0.263 C10 T8S 7
T8S N N2 N 0 1 N N N N N N 6.905 -3.253 26.518 2.477 0.147 -0.147 N T8S 8
T8S C C7 C 0 1 N N N N N N 8.882 -4.649 27.087 4.816 -0.276 -0.722 C T8S 9
T8S O O1 O 0 1 N N N N N N 4.902 -3.134 25.468 1.619 -1.700 0.735 O T8S 10
T8S C1 C8 C 0 1 N N N N N N 7.437 -4.319 27.404 3.799 -0.146 0.413 C1 T8S 11
T8S C11 C9 C 0 1 N N N N N N 6.922 -3.084 19.283 -4.853 -0.809 0.397 C11 T8S 12
T8S C2 C10 C 0 1 N N N N N N 6.550 -5.547 27.435 4.220 0.989 1.348 C2 T8S 13
T8S C3 C11 C 0 1 N N N N N N 7.420 -1.906 26.783 2.272 1.357 -0.946 C3 T8S 14
T8S C9 C12 C 0 1 N N N N N N 7.187 -2.923 23.301 -0.409 0.944 0.042 C9 T8S 15
T8S O1 O2 O 0 1 N N N N N N 5.516 -4.955 19.644 -4.177 1.434 0.680 O1 T8S 16
T8S H10 H1 H 0 1 N N N N N N 7.631 -4.631 24.531 0.159 -0.343 -1.589 H10 T8S 17
T8S H11 H2 H 0 1 N N N N N N 5.548 -5.857 24.110 -0.521 -2.463 -0.476 H11 T8S 18
T8S H12 H3 H 0 1 N N N N N N 4.882 -4.458 23.202 -0.977 -1.542 0.978 H12 T8S 19
T8S H13 H4 H 0 1 N N N N N N 7.359 -6.084 22.478 -2.985 -1.945 -0.366 H13 T8S 20
T8S H14 H5 H 0 1 N N N N N N 5.762 -6.143 21.658 -2.192 -1.265 -1.810 H14 T8S 21
T8S H15 H6 H 0 1 N N N N N N 8.723 -3.992 22.260 -1.667 1.414 -1.646 H15 T8S 22
T8S H16 H7 H 0 1 N N N N N N 8.016 -2.615 21.350 -2.180 2.167 -0.114 H16 T8S 23
T8S H2 H8 H 0 1 N N N N N N 9.477 -3.724 27.078 4.857 0.659 -1.282 H2 T8S 24
T8S H1 H9 H 0 1 N N N N N N 9.279 -5.332 27.853 5.799 -0.494 -0.306 H1 T8S 25
T8S H H10 H 0 1 N N N N N N 8.940 -5.131 26.100 4.516 -1.085 -1.388 H T8S 26
T8S H3 H11 H 0 1 N N N N N N 7.432 -3.910 28.425 3.757 -1.081 0.972 H3 T8S 27
T8S H21 H12 H 0 1 N N N N N N 6.437 -3.082 18.295 -4.738 -1.271 1.378 H21 T8S 28
T8S H19 H13 H 0 1 N N N N N N 6.724 -2.129 19.791 -5.871 -0.435 0.288 H19 T8S 29
T8S H20 H14 H 0 1 N N N N N N 8.007 -3.215 19.159 -4.653 -1.549 -0.378 H20 T8S 30
T8S H4 H15 H 0 1 N N N N N N 5.517 -5.248 27.669 4.261 1.924 0.789 H4 T8S 31
T8S H5 H16 H 0 1 N N N N N N 6.575 -6.042 26.453 3.495 1.082 2.157 H5 T8S 32
T8S H6 H17 H 0 1 N N N N N N 6.914 -6.243 28.206 5.203 0.771 1.764 H6 T8S 33
T8S H9 H18 H 0 1 N N N N N N 6.967 -1.194 26.077 1.976 2.178 -0.293 H9 T8S 34
T8S H8 H19 H 0 1 N N N N N N 7.167 -1.613 27.813 3.199 1.617 -1.457 H8 T8S 35
T8S H7 H20 H 0 1 N N N N N N 8.513 -1.900 26.658 1.488 1.178 -1.682 H7 T8S 36
T8S H17 H21 H 0 1 N N N N N N 7.936 -2.310 23.824 -0.502 0.884 1.126 H17 T8S 37
T8S H18 H22 H 0 1 N N N N N N 6.314 -2.302 23.051 0.300 1.730 -0.220 H18 T8S 38
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
T8S C1 C SING N N 1
T8S C1 C2 SING N N 2
T8S N C1 SING N N 3
T8S N C3 SING N N 4
T8S C4 N SING N N 5
T8S C4 O DOUB N N 6
T8S C5 C4 SING N N 7
T8S C6 C5 SING N N 8
T8S C7 C6 SING N N 9
T8S N1 C7 SING N N 10
T8S N1 C8 SING N N 11
T8S C8 C9 SING N N 12
T8S C9 C5 SING N N 13
T8S C10 N1 SING N N 14
T8S C10 O1 DOUB N N 15
T8S C11 C10 SING N N 16
T8S C5 H10 SING N N 17
T8S C6 H11 SING N N 18
T8S C6 H12 SING N N 19
T8S C7 H13 SING N N 20
T8S C7 H14 SING N N 21
T8S C8 H15 SING N N 22
T8S C8 H16 SING N N 23
T8S C H2 SING N N 24
T8S C H1 SING N N 25
T8S C H SING N N 26
T8S C1 H3 SING N N 27
T8S C11 H21 SING N N 28
T8S C11 H19 SING N N 29
T8S C11 H20 SING N N 30
T8S C2 H4 SING N N 31
T8S C2 H5 SING N N 32
T8S C2 H6 SING N N 33
T8S C3 H9 SING N N 34
T8S C3 H8 SING N N 35
T8S C3 H7 SING N N 36
T8S C9 H17 SING N N 37
T8S C9 H18 SING N N 38
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
T8S SMILES ACDLabs 12.01 N1(CCC(C(N(C(C)C)C)=O)CC1)C(=O)C
T8S InChI InChI 1.03 InChI=1S/C12H22N2O2/c1-9(2)13(4)12(16)11-5-7-14(8-6-11)10(3)15/h9,11H,5-8H2,1-4H3
T8S InChIKey InChI 1.03 CELKOAKJTFSHIV-UHFFFAOYSA-N
T8S SMILES_CANONICAL CACTVS 3.385 CC(C)N(C)C(=O)C1CCN(CC1)C(C)=O
T8S SMILES CACTVS 3.385 CC(C)N(C)C(=O)C1CCN(CC1)C(C)=O
T8S SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 CC(C)N(C)C(=O)C1CCN(CC1)C(=O)C
T8S SMILES "OpenEye OEToolkits" 2.0.7 CC(C)N(C)C(=O)C1CCN(CC1)C(=O)C
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
T8S "SYSTEMATIC NAME" ACDLabs 12.01 1-acetyl-N-methyl-N-(propan-2-yl)piperidine-4-carboxamide
T8S "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 1-ethanoyl-~{N}-methyl-~{N}-propan-2-yl-piperidine-4-carboxamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
T8S 'Create component' 2020-03-16 RCSB
T8S 'Initial release' 2020-03-25 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
T8S N1 N 4.299 -2.625 1
T8S C4 C 4.299 1.875 2
T8S C5 C 4.299 0.375 3
T8S C6 C 3.000 -0.375 4
T8S C7 C 3.000 -1.875 5
T8S C8 C 5.598 -1.875 6
T8S C10 C 4.299 -4.125 7
T8S N N 5.598 2.625 8
T8S C C 6.897 4.875 9
T8S O O 3.000 2.625 10
T8S C1 C 5.598 4.125 11
T8S C11 C 3.000 -4.875 12
T8S C2 C 4.299 4.875 13
T8S C3 C 6.897 1.875 14
T8S C9 C 5.598 -0.375 15
T8S O1 O 5.598 -4.875 16
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
T8S C1 C SINGLE NONE 1
T8S C1 C2 SINGLE NONE 2
T8S N C1 SINGLE NONE 3
T8S N C3 SINGLE NONE 4
T8S C4 N SINGLE NONE 5
T8S C4 O DOUBLE NONE 6
T8S C5 C4 SINGLE NONE 7
T8S C6 C5 SINGLE NONE 8
T8S C7 C6 SINGLE NONE 9
T8S N1 C7 SINGLE NONE 10
T8S N1 C8 SINGLE NONE 11
T8S C8 C9 SINGLE NONE 12
T8S C9 C5 SINGLE NONE 13
T8S C10 N1 SINGLE NONE 14
T8S C10 O1 DOUBLE NONE 15
T8S C11 C10 SINGLE NONE 16
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
T8S MurckoScaffold S1 scaffold C1CCNCC1 InChI=1S/C5H11N/c1-2-4-6-5-3-1/h6H,1-5H2 NQRYJNQNLNOLGT-UHFFFAOYSA-N
T8S amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
T8S N1 S1 1
T8S C5 S1 1
T8S C6 S1 1
T8S C7 S1 1
T8S C8 S1 1
T8S C9 S1 1
T8S N1 F1 1
T8S C10 F1 1
T8S O1 F1 1
T8S C11 F1 1
T8S N F1 2
T8S C4 F1 2
T8S O F1 2
T8S C5 F1 2
#
_pdbe_chem_comp_rdkit_properties.comp_id T8S
_pdbe_chem_comp_rdkit_properties.exactmw 226.168
_pdbe_chem_comp_rdkit_properties.amw 226.320
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 0
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 6
_pdbe_chem_comp_rdkit_properties.NumHBD 0
_pdbe_chem_comp_rdkit_properties.NumHBA 2
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 16
_pdbe_chem_comp_rdkit_properties.NumAtoms 38
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 4
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.833
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 128.500
_pdbe_chem_comp_rdkit_properties.tpsa 40.620
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.112
_pdbe_chem_comp_rdkit_properties.CrippenMR 62.884
_pdbe_chem_comp_rdkit_properties.chi0v 7.711
_pdbe_chem_comp_rdkit_properties.chi1v 3.750
_pdbe_chem_comp_rdkit_properties.chi2v 1.429
_pdbe_chem_comp_rdkit_properties.chi3v 1.429
_pdbe_chem_comp_rdkit_properties.chi4v 0.705
_pdbe_chem_comp_rdkit_properties.chi0n 29.711
_pdbe_chem_comp_rdkit_properties.chi1n 14.750
_pdbe_chem_comp_rdkit_properties.chi2n 1.429
_pdbe_chem_comp_rdkit_properties.chi3n 1.429
_pdbe_chem_comp_rdkit_properties.chi4n 0.705
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.060
_pdbe_chem_comp_rdkit_properties.kappa1 2.128
_pdbe_chem_comp_rdkit_properties.kappa2 5.323
_pdbe_chem_comp_rdkit_properties.kappa3 2.966
_pdbe_chem_comp_rdkit_properties.Phi 0.708
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
T8S UniChem PDBe T8S
T8S UniChem PubChem 146018721
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
T8S N1 2.996 -0.199 0.039 ETKDGv3 1
T8S C4 -1.048 0.002 -0.169 ETKDGv3 2
T8S C5 0.117 -0.724 0.477 ETKDGv3 3
T8S C6 0.944 0.233 1.373 ETKDGv3 4
T8S C7 2.149 0.844 0.644 ETKDGv3 5
T8S C8 2.441 -1.541 -0.196 ETKDGv3 6
T8S C10 4.373 0.077 -0.293 ETKDGv3 7
T8S N -2.392 -0.541 -0.163 ETKDGv3 8
T8S C -3.582 1.486 0.660 ETKDGv3 9
T8S O -0.818 1.098 -0.750 ETKDGv3 10
T8S C1 -3.577 0.326 -0.343 ETKDGv3 11
T8S C11 4.907 1.478 -0.316 ETKDGv3 12
T8S C2 -3.688 0.824 -1.789 ETKDGv3 13
T8S C3 -2.595 -1.985 0.008 ETKDGv3 14
T8S C9 0.969 -1.435 -0.602 ETKDGv3 15
T8S O1 5.163 -0.873 -0.548 ETKDGv3 16
T8S H10 -0.278 -1.504 1.161 ETKDGv3 17
T8S H11 0.306 1.045 1.787 ETKDGv3 18
T8S H12 1.331 -0.339 2.246 ETKDGv3 19
T8S H13 1.802 1.541 -0.147 ETKDGv3 20
T8S H14 2.734 1.423 1.390 ETKDGv3 21
T8S H15 2.988 -2.054 -1.018 ETKDGv3 22
T8S H16 2.542 -2.153 0.726 ETKDGv3 23
T8S H2 -4.550 2.028 0.607 ETKDGv3 24
T8S H1 -2.767 2.210 0.451 ETKDGv3 25
T8S H -3.457 1.093 1.691 ETKDGv3 26
T8S H3 -4.502 -0.258 -0.139 ETKDGv3 27
T8S H21 4.194 2.150 -0.837 ETKDGv3 28
T8S H19 5.877 1.513 -0.857 ETKDGv3 29
T8S H20 5.066 1.835 0.722 ETKDGv3 30
T8S H4 -3.617 -0.034 -2.490 ETKDGv3 31
T8S H5 -4.670 1.320 -1.942 ETKDGv3 32
T8S H6 -2.891 1.555 -2.034 ETKDGv3 33
T8S H9 -2.441 -2.267 1.070 ETKDGv3 34
T8S H8 -3.622 -2.292 -0.285 ETKDGv3 35
T8S H7 -1.891 -2.549 -0.639 ETKDGv3 36
T8S H17 0.567 -2.454 -0.787 ETKDGv3 37
T8S H18 0.923 -0.879 -1.566 ETKDGv3 38
#