data_T9P
#
_chem_comp.id T9P
_chem_comp.name N~2~-acetyl-N~1~-prop-2-en-1-yl-L-aspartamide
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula 'C9 H15 N3 O3'
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2020-03-18
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 213.234
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code T9P
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5RG3
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
T9P N1 N1 N 0 1 N N N N N N 2.825 -7.255 22.452 1.464 -0.824 0.845 N1 T9P 1
T9P N3 N2 N 0 1 N N N N N N 5.425 -6.138 22.285 -2.030 0.200 0.442 N3 T9P 2
T9P C4 C1 C 0 1 N N N N N N 2.846 -6.403 24.769 0.862 1.144 -0.476 C4 T9P 3
T9P C5 C2 C 0 1 N N N N N N 3.110 -7.856 25.104 2.098 1.897 -0.057 C5 T9P 4
T9P C6 C3 C 0 1 N N N N N N 4.572 -5.553 23.140 -0.868 -0.463 0.281 C6 T9P 5
T9P C7 C4 C 0 1 N N N N N N 6.661 -5.493 21.831 -3.297 -0.443 0.084 C7 T9P 6
T9P C8 C5 C 0 1 N N N N N N 6.660 -5.136 20.349 -4.437 0.504 0.357 C8 T9P 7
T9P C1 C6 C 0 1 N N N N N N 1.383 -8.643 21.097 2.849 -2.708 0.037 C1 T9P 8
T9P C2 C7 C 0 1 N N N N N N 1.625 -7.387 21.872 1.790 -1.655 -0.165 C2 T9P 9
T9P C3 C8 C 0 1 N N S N N N 3.150 -6.108 23.298 0.435 0.199 0.649 C3 T9P 10
T9P C9 C9 C 0 1 N N N N N N 5.689 -5.638 19.622 -5.282 0.804 -0.597 C9 T9P 11
T9P N2 N3 N 0 1 N N N N N N 2.277 -8.438 25.953 2.658 2.792 -0.895 N2 T9P 12
T9P O1 O1 O 0 1 N N N N N N 0.765 -6.512 21.952 1.230 -1.555 -1.236 O1 T9P 13
T9P O2 O2 O 0 1 N N N N N N 4.060 -8.447 24.602 2.589 1.698 1.034 O2 T9P 14
T9P O3 O3 O 0 1 N N N N N N 4.892 -4.566 23.799 -0.871 -1.593 -0.160 O3 T9P 15
T9P H4 H1 H 0 1 N N N N N N 3.518 -7.960 22.302 1.909 -0.907 1.703 H4 T9P 16
T9P H10 H2 H 0 1 N N N N N N 5.209 -7.052 21.943 -2.028 1.104 0.794 H10 T9P 17
T9P H6 H3 H 0 1 N N N N N N 3.484 -5.768 25.401 0.058 1.851 -0.682 H6 T9P 18
T9P H7 H4 H 0 1 N N N N N N 1.789 -6.175 24.969 1.077 0.565 -1.375 H7 T9P 19
T9P H12 H5 H 0 1 N N N N N N 6.803 -4.569 22.410 -3.286 -0.703 -0.975 H12 T9P 20
T9P H11 H6 H 0 1 N N N N N N 7.500 -6.178 22.022 -3.425 -1.348 0.679 H11 T9P 21
T9P H13 H7 H 0 1 N N N N N N 7.421 -4.501 19.918 -4.557 0.935 1.340 H13 T9P 22
T9P H2 H8 H 0 1 N N N N N N 0.374 -8.616 20.660 2.974 -3.278 -0.883 H2 T9P 23
T9P H3 H9 H 0 1 N N N N N N 2.129 -8.727 20.293 3.793 -2.228 0.298 H3 T9P 24
T9P H1 H10 H 0 1 N N N N N N 1.469 -9.510 21.768 2.547 -3.378 0.842 H1 T9P 25
T9P H5 H11 H 0 1 N N N N N N 2.472 -5.293 23.005 0.306 0.767 1.571 H5 T9P 26
T9P H15 H12 H 0 1 N N N N N N 5.637 -5.419 18.566 -6.099 1.483 -0.401 H15 T9P 27
T9P H14 H13 H 0 1 N N N N N N 4.942 -6.270 20.080 -5.162 0.373 -1.580 H14 T9P 28
T9P H8 H14 H 0 1 N N N N N N 2.411 -9.396 26.207 2.266 2.951 -1.767 H8 T9P 29
T9P H9 H15 H 0 1 N N N N N N 1.514 -7.920 26.340 3.454 3.277 -0.625 H9 T9P 30
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
T9P C1 C2 SING N N 1
T9P C2 O1 DOUB N N 2
T9P C2 N1 SING N N 3
T9P N1 C3 SING N N 4
T9P C3 C4 SING N N 5
T9P C4 C5 SING N N 6
T9P C5 N2 SING N N 7
T9P C5 O2 DOUB N N 8
T9P C3 C6 SING N N 9
T9P C6 O3 DOUB N N 10
T9P C6 N3 SING N N 11
T9P N3 C7 SING N N 12
T9P C7 C8 SING N N 13
T9P C8 C9 DOUB N N 14
T9P N1 H4 SING N N 15
T9P N3 H10 SING N N 16
T9P C4 H6 SING N N 17
T9P C4 H7 SING N N 18
T9P C7 H12 SING N N 19
T9P C7 H11 SING N N 20
T9P C8 H13 SING N N 21
T9P C1 H2 SING N N 22
T9P C1 H3 SING N N 23
T9P C1 H1 SING N N 24
T9P C3 H5 SING N N 25
T9P C9 H15 SING N N 26
T9P C9 H14 SING N N 27
T9P N2 H8 SING N N 28
T9P N2 H9 SING N N 29
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
T9P SMILES ACDLabs 12.01 'N(C(CC(N)=O)C(NC\C=C)=O)C(C)=O'
T9P InChI InChI 1.03 'InChI=1S/C9H15N3O3/c1-3-4-11-9(15)7(5-8(10)14)12-6(2)13/h3,7H,1,4-5H2,2H3,(H2,10,14)(H,11,15)(H,12,13)/t7-/m0/s1'
T9P InChIKey InChI 1.03 SLTSADPWEPQRIY-ZETCQYMHSA-N
T9P SMILES_CANONICAL CACTVS 3.385 'CC(=O)N[C@@H](CC(N)=O)C(=O)NCC=C'
T9P SMILES CACTVS 3.385 'CC(=O)N[CH](CC(N)=O)C(=O)NCC=C'
T9P SMILES_CANONICAL 'OpenEye OEToolkits' 2.0.7 'CC(=O)N[C@@H](CC(=O)N)C(=O)NCC=C'
T9P SMILES 'OpenEye OEToolkits' 2.0.7 'CC(=O)NC(CC(=O)N)C(=O)NCC=C'
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
T9P 'SYSTEMATIC NAME' ACDLabs 12.01 N~2~-acetyl-N~1~-prop-2-en-1-yl-L-aspartamide
T9P 'SYSTEMATIC NAME' 'OpenEye OEToolkits' 2.0.7 '(2~{S})-2-acetamido-~{N}-prop-2-enyl-butanediamide'
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
T9P 'Create component' 2020-03-18 RCSB
T9P 'Initial release' 2020-04-15 RCSB
T9P 'Modify PCM' 2024-09-27 PDBE
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id T9P
_pdbx_chem_comp_pcm.modified_residue_id CYS
_pdbx_chem_comp_pcm.type None
_pdbx_chem_comp_pcm.category 'Covalent chemical modification'
_pdbx_chem_comp_pcm.position 'Amino-acid side chain'
_pdbx_chem_comp_pcm.polypeptide_position 'Any position'
_pdbx_chem_comp_pcm.comp_id_linking_atom C8
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
_pdbx_chem_comp_pcm.first_instance_model_db_code 5RG3
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
T9P N1 N 5.598 0.233 1
T9P N3 N 8.196 1.732 2
T9P C4 C 6.897 -2.018 3
T9P C5 C 8.196 -2.768 4
T9P C6 C 8.196 0.233 5
T9P C7 C 9.495 2.482 6
T9P C8 C 9.495 3.982 7
T9P C1 C 4.299 -2.018 8
T9P C2 C 4.299 -0.517 9
T9P C3 C 6.897 -0.517 10
T9P C9 C 10.794 4.732 11
T9P N2 N 9.495 -2.018 12
T9P O1 O 3.000 0.233 13
T9P O2 O 8.196 -4.268 14
T9P O3 O 9.495 -0.517 15
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
T9P C1 C2 SINGLE NONE 1
T9P C2 O1 DOUBLE NONE 2
T9P C2 N1 SINGLE NONE 3
T9P N1 C3 SINGLE NONE 4
T9P C3 C4 SINGLE BEGINDASH 5
T9P C4 C5 SINGLE NONE 6
T9P C5 N2 SINGLE NONE 7
T9P C5 O2 DOUBLE NONE 8
T9P C3 C6 SINGLE NONE 9
T9P C6 O3 DOUBLE NONE 10
T9P C6 N3 SINGLE NONE 11
T9P N3 C7 SINGLE NONE 12
T9P C7 C8 SINGLE NONE 13
T9P C8 C9 DOUBLE NONE 14
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
T9P amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
T9P peptide F2 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
T9P N1 F1 1
T9P C2 F1 1
T9P O1 F1 1
T9P C1 F1 1
T9P N3 F1 2
T9P C6 F1 2
T9P O3 F1 2
T9P C3 F1 2
T9P N2 F1 3
T9P C5 F1 3
T9P O2 F1 3
T9P C4 F1 3
T9P O3 F2 1
T9P C6 F2 1
T9P C3 F2 1
T9P N1 F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id T9P
_pdbe_chem_comp_rdkit_properties.exactmw 213.111
_pdbe_chem_comp_rdkit_properties.amw 213.237
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 6
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 4
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 7
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 15
_pdbe_chem_comp_rdkit_properties.NumAtoms 30
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 6
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 3
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.444
_pdbe_chem_comp_rdkit_properties.NumRings 0
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 109.200
_pdbe_chem_comp_rdkit_properties.tpsa 101.290
_pdbe_chem_comp_rdkit_properties.CrippenClogP -1.331
_pdbe_chem_comp_rdkit_properties.CrippenMR 54.623
_pdbe_chem_comp_rdkit_properties.chi0v 7.066
_pdbe_chem_comp_rdkit_properties.chi1v 3.230
_pdbe_chem_comp_rdkit_properties.chi2v 0.855
_pdbe_chem_comp_rdkit_properties.chi3v 0.855
_pdbe_chem_comp_rdkit_properties.chi4v 0.464
_pdbe_chem_comp_rdkit_properties.chi0n 22.066
_pdbe_chem_comp_rdkit_properties.chi1n 10.519
_pdbe_chem_comp_rdkit_properties.chi2n 0.855
_pdbe_chem_comp_rdkit_properties.chi3n 0.855
_pdbe_chem_comp_rdkit_properties.chi4n 0.464
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.850
_pdbe_chem_comp_rdkit_properties.kappa1 2.634
_pdbe_chem_comp_rdkit_properties.kappa2 6.581
_pdbe_chem_comp_rdkit_properties.kappa3 6.252
_pdbe_chem_comp_rdkit_properties.Phi 1.155
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
T9P UniChem PDBe T9P
T9P UniChem PubChem 146035933
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
T9P N1 -1.251 0.463 0.086 ETKDGv3 1
T9P N3 1.604 -0.194 -0.181 ETKDGv3 2
T9P C4 -0.999 -2.000 0.205 ETKDGv3 3
T9P C5 -2.475 -2.271 0.203 ETKDGv3 4
T9P C6 0.809 -0.471 0.980 ETKDGv3 5
T9P C7 3.049 0.007 -0.084 ETKDGv3 6
T9P C8 3.637 0.351 -1.425 ETKDGv3 7
T9P C1 -1.895 2.894 -0.233 ETKDGv3 8
T9P C2 -1.362 1.790 0.620 ETKDGv3 9
T9P C3 -0.682 -0.645 0.861 ETKDGv3 10
T9P C9 3.360 1.510 -2.030 ETKDGv3 11
T9P N2 -3.126 -2.732 1.387 ETKDGv3 12
T9P O1 -0.990 2.037 1.799 ETKDGv3 13
T9P O2 -3.150 -2.064 -0.841 ETKDGv3 14
T9P O3 1.358 -0.593 2.109 ETKDGv3 15
T9P H4 -1.557 0.301 -0.901 ETKDGv3 16
T9P H10 1.131 -0.136 -1.112 ETKDGv3 17
T9P H6 -0.491 -2.815 0.766 ETKDGv3 18
T9P H7 -0.612 -2.022 -0.838 ETKDGv3 19
T9P H12 3.523 -0.926 0.289 ETKDGv3 20
T9P H11 3.268 0.825 0.636 ETKDGv3 21
T9P H13 4.310 -0.352 -1.905 ETKDGv3 22
T9P H2 -2.061 3.810 0.372 ETKDGv3 23
T9P H3 -2.860 2.584 -0.686 ETKDGv3 24
T9P H1 -1.167 3.120 -1.041 ETKDGv3 25
T9P H5 -1.130 -0.640 1.881 ETKDGv3 26
T9P H15 2.695 2.234 -1.570 ETKDGv3 27
T9P H14 3.802 1.737 -2.995 ETKDGv3 28
T9P H8 -2.582 -2.895 2.263 ETKDGv3 29
T9P H9 -4.155 -2.908 1.388 ETKDGv3 30
#