data_TBK
#
_chem_comp.id TBK
_chem_comp.name
~{N}-[[4-[[(2~{S})-4-cyclohexyl-1-[[(3~{S})-1-methylsulfonylpiperidin-3-yl]amino]-1-oxidanylidene-butan-2-yl]carbamoyl]phenyl]methyl]imidazo[1,2-a]pyridine-3-carboxamide
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C32 H42 N6 O5 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2020-12-20
_chem_comp.pdbx_modified_date 2021-02-26
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 622.778
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code TBK
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7BCM
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
TBK C1 C1 C 0 1 N N S N N N -14.903 -19.423 27.621 -2.514 0.430 1.373 C1 TBK 1
TBK C3 C2 C 0 1 N N S N N N -17.983 -21.409 26.538 -5.801 -1.217 0.308 C3 TBK 2
TBK C5 C3 C 0 1 N N N N N N -18.819 -23.985 29.942 -10.242 -0.318 -1.790 C5 TBK 3
TBK C6 C4 C 0 1 N N N N N N -19.626 -23.713 25.943 -8.441 -2.520 0.391 C6 TBK 4
TBK N2 N1 N 0 1 N N N N N N -19.075 -23.452 27.286 -8.072 -1.455 -0.553 N2 TBK 5
TBK N4 N2 N 0 1 Y N N N N N -9.573 -11.467 20.514 8.429 0.814 -2.111 N4 TBK 6
TBK C28 C5 C 0 1 Y N N N N N -12.504 -12.150 18.615 10.077 -1.916 -0.729 C28 TBK 7
TBK C27 C6 C 0 1 Y N N N N N -10.251 -11.664 19.380 9.471 -0.005 -1.990 C27 TBK 8
TBK C26 C7 C 0 1 Y N N N N N -10.510 -11.612 21.514 7.465 0.440 -1.285 C26 TBK 9
TBK C29 C8 C 0 1 Y N N N N N -12.082 -12.164 17.330 11.284 -1.962 -1.338 C29 TBK 10
TBK C30 C9 C 0 1 Y N N N N N -10.719 -11.937 17.028 11.619 -1.007 -2.308 C30 TBK 11
TBK C24 C10 C 0 1 N N N N N N -13.030 -12.271 21.680 7.178 -1.400 0.393 C24 TBK 12
TBK C20 C11 C 0 1 Y N N N N N -15.087 -15.495 25.882 2.192 0.162 2.811 C20 TBK 13
TBK C13 C12 C 0 1 N N N N N N -9.961 -21.603 27.987 -1.024 6.468 0.324 C13 TBK 14
TBK C12 C13 C 0 1 N N N N N N -10.705 -20.335 28.387 -0.936 5.163 1.118 C12 TBK 15
TBK C9 C14 C 0 1 N N N N N N -14.361 -19.266 29.037 -2.602 1.736 0.580 C9 TBK 16
TBK N N3 N 0 1 N N N N N N -14.989 -18.143 26.931 -1.164 -0.126 1.251 N TBK 17
TBK C C15 C 0 1 N N N N N N -14.100 -17.810 25.987 -0.186 0.292 2.079 C TBK 18
TBK O O1 O 0 1 N N N N N N -13.189 -18.572 25.677 -0.424 1.130 2.927 O TBK 19
TBK C10 C16 C 0 1 N N N N N N -12.849 -19.261 29.034 -1.676 2.778 1.210 C10 TBK 20
TBK C11 C17 C 0 1 N N N N N N -12.192 -20.571 28.590 -1.764 4.084 0.417 C11 TBK 21
TBK C14 C18 C 0 1 N N N N N N -10.141 -22.685 29.025 -0.479 6.245 -1.088 C14 TBK 22
TBK C15 C19 C 0 1 N N N N N N -11.615 -22.967 29.257 -1.307 5.166 -1.788 C15 TBK 23
TBK C16 C20 C 0 1 N N N N N N -12.404 -21.697 29.597 -1.219 3.860 -0.995 C16 TBK 24
TBK C17 C21 C 0 1 Y N N N N N -14.247 -16.463 25.340 1.177 -0.269 1.956 C17 TBK 25
TBK C18 C22 C 0 1 Y N N N N N -13.481 -16.120 24.225 1.453 -1.231 0.983 C18 TBK 26
TBK C19 C23 C 0 1 Y N N N N N -13.514 -14.832 23.709 2.727 -1.750 0.873 C19 TBK 27
TBK C2 C24 C 0 1 N N N N N N -16.238 -20.158 27.722 -3.514 -0.557 0.829 C2 TBK 28
TBK C21 C25 C 0 1 Y N N N N N -15.109 -14.204 25.370 3.462 -0.361 2.687 C21 TBK 29
TBK C22 C26 C 0 1 Y N N N N N -14.305 -13.845 24.292 3.729 -1.319 1.724 C22 TBK 30
TBK C23 C27 C 0 1 N N N N N N -14.266 -12.416 23.800 5.117 -1.890 1.598 C23 TBK 31
TBK C25 C28 C 0 1 Y N N N N N -11.754 -11.899 21.029 7.899 -0.678 -0.591 C25 TBK 32
TBK C31 C29 C 0 1 Y N N N N N -9.816 -11.678 18.029 10.721 -0.035 -2.634 C31 TBK 33
TBK C4 C30 C 0 1 N N N N N N -17.796 -22.727 27.257 -7.059 -0.471 -0.147 C4 TBK 34
TBK C7 C31 C 0 1 N N N N N N -19.744 -22.449 25.106 -7.167 -3.243 0.840 C7 TBK 35
TBK C8 C32 C 0 1 N N N N N N -18.426 -21.679 25.115 -6.176 -2.221 1.401 C8 TBK 36
TBK N1 N4 N 0 1 N N N N N N -16.714 -20.694 26.595 -4.829 -0.258 0.837 N1 TBK 37
TBK N3 N5 N 0 1 N N N N N N -13.093 -12.067 23.003 5.898 -1.076 0.663 N3 TBK 38
TBK N5 N6 N 0 1 Y N N N N N -11.598 -11.915 19.634 9.176 -0.950 -1.048 N5 TBK 39
TBK O1 O2 O 0 1 N N N N N N -20.582 -25.053 28.380 -9.175 -2.704 -2.327 O1 TBK 40
TBK O2 O3 O 0 1 N N N N N N -18.213 -25.623 28.047 -7.824 -0.699 -2.853 O2 TBK 41
TBK O3 O4 O 0 1 N N N N N N -16.802 -20.262 28.809 -3.137 -1.619 0.383 O3 TBK 42
TBK O4 O5 O 0 1 N N N N N N -13.938 -12.781 21.040 7.714 -2.313 0.994 O4 TBK 43
TBK S S1 S 0 1 N N N N N N -19.211 -24.656 28.373 -8.784 -1.367 -2.045 S TBK 44
TBK H1 H1 H 0 1 N N N N N N -14.207 -20.071 27.068 -2.732 0.627 2.423 H1 TBK 45
TBK H2 H2 H 0 1 N N N N N N -18.762 -20.827 27.052 -5.366 -1.747 -0.539 H2 TBK 46
TBK H3 H3 H 0 1 N N N N N N -18.899 -24.771 30.708 -9.926 0.662 -1.431 H3 TBK 47
TBK H4 H4 H 0 1 N N N N N N -17.792 -23.592 29.926 -10.777 -0.204 -2.733 H4 TBK 48
TBK H5 H5 H 0 1 N N N N N N -19.519 -23.170 30.178 -10.898 -0.780 -1.053 H5 TBK 49
TBK H6 H6 H 0 1 N N N N N N -20.626 -24.158 26.052 -8.938 -2.084 1.257 H6 TBK 50
TBK H7 H7 H 0 1 N N N N N N -18.965 -24.421 25.422 -9.111 -3.226 -0.099 H7 TBK 51
TBK H8 H8 H 0 1 N N N N N N -13.545 -12.322 18.845 9.827 -2.655 0.018 H8 TBK 52
TBK H9 H9 H 0 1 N N N N N N -10.285 -11.510 22.565 6.505 0.922 -1.172 H9 TBK 53
TBK H10 H10 H 0 1 N N N N N N -12.787 -12.349 16.533 11.991 -2.734 -1.075 H10 TBK 54
TBK H11 H11 H 0 1 N N N N N N -10.386 -11.968 16.001 12.582 -1.042 -2.795 H11 TBK 55
TBK H12 H12 H 0 1 N N N N N N -15.730 -15.751 26.711 1.984 0.906 3.566 H12 TBK 56
TBK H13 H13 H 0 1 N N N N N N -10.352 -21.961 27.023 -2.064 6.789 0.266 H13 TBK 57
TBK H14 H14 H 0 1 N N N N N N -8.890 -21.375 27.887 -0.434 7.237 0.824 H14 TBK 58
TBK H15 H15 H 0 1 N N N N N N -10.277 -19.957 29.327 0.104 4.842 1.176 H15 TBK 59
TBK H16 H16 H 0 1 N N N N N N -10.572 -19.584 27.595 -1.324 5.322 2.124 H16 TBK 60
TBK H17 H17 H 0 1 N N N N N N -14.724 -18.317 29.459 -2.297 1.556 -0.451 H17 TBK 61
TBK H18 H18 H 0 1 N N N N N N -14.718 -20.103 29.655 -3.628 2.103 0.597 H18 TBK 62
TBK H19 H19 H 0 1 N N N N N N -15.722 -17.504 27.166 -0.974 -0.794 0.574 H19 TBK 63
TBK H20 H20 H 0 1 N N N N N N -12.508 -19.039 30.056 -1.980 2.958 2.241 H20 TBK 64
TBK H21 H21 H 0 1 N N N N N N -12.513 -18.465 28.354 -0.650 2.411 1.193 H21 TBK 65
TBK H22 H22 H 0 1 N N N N N N -12.634 -20.874 27.629 -2.804 4.404 0.359 H22 TBK 66
TBK H23 H23 H 0 1 N N N N N N -9.648 -23.605 28.677 -0.542 7.175 -1.653 H23 TBK 67
TBK H24 H24 H 0 1 N N N N N N -9.683 -22.358 29.970 0.561 5.924 -1.030 H24 TBK 68
TBK H25 H25 H 0 1 N N N N N N -12.038 -23.412 28.344 -2.347 5.486 -1.847 H25 TBK 69
TBK H26 H26 H 0 1 N N N N N N -11.712 -23.678 30.091 -0.919 5.006 -2.795 H26 TBK 70
TBK H27 H27 H 0 1 N N N N N N -12.087 -21.343 30.589 -0.179 3.539 -0.937 H27 TBK 71
TBK H28 H28 H 0 1 N N N N N N -13.475 -21.947 29.622 -1.809 3.091 -1.495 H28 TBK 72
TBK H29 H29 H 0 1 N N N N N N -12.855 -16.866 23.758 0.672 -1.568 0.318 H29 TBK 73
TBK H30 H30 H 0 1 N N N N N N -12.917 -14.591 22.842 2.942 -2.494 0.121 H30 TBK 74
TBK H31 H31 H 0 1 N N N N N N -15.760 -13.467 25.816 4.250 -0.025 3.345 H31 TBK 75
TBK H32 H32 H 0 1 N N N N N N -14.292 -11.753 24.677 5.602 -1.886 2.575 H32 TBK 76
TBK H33 H33 H 0 1 N N N N N N -15.161 -12.243 23.184 5.057 -2.913 1.227 H33 TBK 77
TBK H34 H34 H 0 1 N N N N N N -8.780 -11.486 17.790 10.967 0.706 -3.380 H34 TBK 78
TBK H35 H35 H 0 1 N N N N N N -17.044 -23.330 26.728 -7.444 0.132 0.675 H35 TBK 79
TBK H36 H36 H 0 1 N N N N N N -17.457 -22.539 28.286 -6.816 0.173 -0.993 H36 TBK 80
TBK H37 H37 H 0 1 N N N N N N -20.539 -21.812 25.522 -7.415 -3.971 1.612 H37 TBK 81
TBK H38 H38 H 0 1 N N N N N N -19.997 -22.722 24.071 -6.719 -3.754 -0.012 H38 TBK 82
TBK H39 H39 H 0 1 N N N N N N -17.655 -22.273 24.602 -5.279 -2.736 1.745 H39 TBK 83
TBK H40 H40 H 0 1 N N N N N N -18.561 -20.722 24.590 -6.634 -1.692 2.238 H40 TBK 84
TBK H41 H41 H 0 1 N N N N N N -16.178 -20.601 25.756 -5.130 0.592 1.194 H41 TBK 85
TBK H42 H42 H 0 1 N N N N N N -12.305 -11.659 23.463 5.493 -0.303 0.238 H42 TBK 86
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
TBK C30 C29 SING Y N 1
TBK C30 C31 DOUB Y N 2
TBK C29 C28 DOUB Y N 3
TBK C31 C27 SING Y N 4
TBK C28 N5 SING Y N 5
TBK C27 N5 SING Y N 6
TBK C27 N4 DOUB Y N 7
TBK N5 C25 SING Y N 8
TBK N4 C26 SING Y N 9
TBK C25 C26 DOUB Y N 10
TBK C25 C24 SING N N 11
TBK O4 C24 DOUB N N 12
TBK C24 N3 SING N N 13
TBK N3 C23 SING N N 14
TBK C19 C18 DOUB Y N 15
TBK C19 C22 SING Y N 16
TBK C23 C22 SING N N 17
TBK C18 C17 SING Y N 18
TBK C22 C21 DOUB Y N 19
TBK C7 C8 SING N N 20
TBK C7 C6 SING N N 21
TBK C8 C3 SING N N 22
TBK C17 C20 DOUB Y N 23
TBK C17 C SING N N 24
TBK C21 C20 SING Y N 25
TBK O C DOUB N N 26
TBK C6 N2 SING N N 27
TBK C N SING N N 28
TBK C3 N1 SING N N 29
TBK C3 C4 SING N N 30
TBK N1 C2 SING N N 31
TBK N C1 SING N N 32
TBK C4 N2 SING N N 33
TBK N2 S SING N N 34
TBK C1 C2 SING N N 35
TBK C1 C9 SING N N 36
TBK C2 O3 DOUB N N 37
TBK C13 C12 SING N N 38
TBK C13 C14 SING N N 39
TBK O2 S DOUB N N 40
TBK S O1 DOUB N N 41
TBK S C5 SING N N 42
TBK C12 C11 SING N N 43
TBK C11 C10 SING N N 44
TBK C11 C16 SING N N 45
TBK C14 C15 SING N N 46
TBK C10 C9 SING N N 47
TBK C15 C16 SING N N 48
TBK C1 H1 SING N N 49
TBK C3 H2 SING N N 50
TBK C5 H3 SING N N 51
TBK C5 H4 SING N N 52
TBK C5 H5 SING N N 53
TBK C6 H6 SING N N 54
TBK C6 H7 SING N N 55
TBK C28 H8 SING N N 56
TBK C26 H9 SING N N 57
TBK C29 H10 SING N N 58
TBK C30 H11 SING N N 59
TBK C20 H12 SING N N 60
TBK C13 H13 SING N N 61
TBK C13 H14 SING N N 62
TBK C12 H15 SING N N 63
TBK C12 H16 SING N N 64
TBK C9 H17 SING N N 65
TBK C9 H18 SING N N 66
TBK N H19 SING N N 67
TBK C10 H20 SING N N 68
TBK C10 H21 SING N N 69
TBK C11 H22 SING N N 70
TBK C14 H23 SING N N 71
TBK C14 H24 SING N N 72
TBK C15 H25 SING N N 73
TBK C15 H26 SING N N 74
TBK C16 H27 SING N N 75
TBK C16 H28 SING N N 76
TBK C18 H29 SING N N 77
TBK C19 H30 SING N N 78
TBK C21 H31 SING N N 79
TBK C23 H32 SING N N 80
TBK C23 H33 SING N N 81
TBK C31 H34 SING N N 82
TBK C4 H35 SING N N 83
TBK C4 H36 SING N N 84
TBK C7 H37 SING N N 85
TBK C7 H38 SING N N 86
TBK C8 H39 SING N N 87
TBK C8 H40 SING N N 88
TBK N1 H41 SING N N 89
TBK N3 H42 SING N N 90
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
TBK InChI InChI 1.03 InChI=1S/C32H42N6O5S/c1-44(42,43)37-18-7-10-26(22-37)35-31(40)27(17-14-23-8-3-2-4-9-23)36-30(39)25-15-12-24(13-16-25)20-34-32(41)28-21-33-29-11-5-6-19-38(28)29/h5-6,11-13,15-16,19,21,23,26-27H,2-4,7-10,14,17-18,20,22H2,1H3,(H,34,41)(H,35,40)(H,36,39)/t26-,27-/m0/s1
TBK InChIKey InChI 1.03 WGMNFJAFXXXRLZ-SVBPBHIXSA-N
TBK SMILES_CANONICAL CACTVS 3.385 C[S](=O)(=O)N1CCC[C@@H](C1)NC(=O)[C@H](CCC2CCCCC2)NC(=O)c3ccc(CNC(=O)c4cnc5ccccn45)cc3
TBK SMILES CACTVS 3.385 C[S](=O)(=O)N1CCC[CH](C1)NC(=O)[CH](CCC2CCCCC2)NC(=O)c3ccc(CNC(=O)c4cnc5ccccn45)cc3
TBK SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 CS(=O)(=O)N1CCC[C@@H](C1)NC(=O)[C@H](CCC2CCCCC2)NC(=O)c3ccc(cc3)CNC(=O)c4cnc5n4cccc5
TBK SMILES "OpenEye OEToolkits" 2.0.7 CS(=O)(=O)N1CCCC(C1)NC(=O)C(CCC2CCCCC2)NC(=O)c3ccc(cc3)CNC(=O)c4cnc5n4cccc5
#
_pdbx_chem_comp_identifier.comp_id TBK
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier
~{N}-[[4-[[(2~{S})-4-cyclohexyl-1-[[(3~{S})-1-methylsulfonylpiperidin-3-yl]amino]-1-oxidanylidene-butan-2-yl]carbamoyl]phenyl]methyl]imidazo[1,2-a]pyridine-3-carboxamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
TBK 'Create component' 2020-12-20 PDBE
TBK 'Initial release' 2021-03-03 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
TBK C1 C 17.222 1.084 1
TBK C3 C 19.622 4.245 2
TBK C5 C 24.491 6.598 3
TBK C6 C 20.554 7.096 4
TBK N2 N 21.555 5.980 5
TBK N4 N 7.018 -7.464 6
TBK C28 C 4.299 -4.757 7
TBK C27 C 5.598 -7.007 8
TBK C26 C 7.893 -6.257 9
TBK C29 C 3.000 -5.507 10
TBK C30 C 3.000 -7.007 11
TBK C24 C 7.483 -3.624 12
TBK C20 C 12.819 0.156 13
TBK C13 C 21.229 -3.382 14
TBK C12 C 20.227 -2.266 15
TBK C9 C 18.224 -0.033 16
TBK N N 15.754 0.774 17
TBK C C 15.288 -0.651 18
TBK O O 16.290 -1.768 19
TBK C10 C 19.691 0.277 20
TBK C11 C 20.693 -0.840 21
TBK C14 C 22.697 -3.073 22
TBK C15 C 23.163 -1.647 23
TBK C16 C 22.161 -0.531 24
TBK C17 C 13.820 -0.961 25
TBK C18 C 13.354 -2.386 26
TBK C19 C 11.887 -2.696 27
TBK C2 C 17.688 2.510 28
TBK C21 C 11.351 -0.154 29
TBK C22 C 10.885 -1.579 30
TBK C23 C 9.417 -1.889 31
TBK C25 C 7.018 -5.050 32
TBK C31 C 4.299 -7.757 33
TBK C4 C 21.089 4.554 34
TBK C7 C 19.086 6.787 35
TBK C8 C 18.620 5.361 36
TBK N1 N 19.156 2.819 37
TBK N3 N 8.951 -3.315 38
TBK N5 N 5.598 -5.507 39
TBK O1 O 23.332 4.821 40
TBK O2 O 22.714 7.757 41
TBK O3 O 16.686 3.626 42
TBK O4 O 6.482 -2.507 43
TBK S S 23.023 6.289 44
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
TBK C30 C29 SINGLE NONE 1
TBK C30 C31 DOUBLE NONE 2
TBK C29 C28 DOUBLE NONE 3
TBK C31 C27 SINGLE NONE 4
TBK C28 N5 SINGLE NONE 5
TBK C27 N5 SINGLE NONE 6
TBK C27 N4 DOUBLE NONE 7
TBK N5 C25 SINGLE NONE 8
TBK N4 C26 SINGLE NONE 9
TBK C25 C26 DOUBLE NONE 10
TBK C25 C24 SINGLE NONE 11
TBK O4 C24 DOUBLE NONE 12
TBK C24 N3 SINGLE NONE 13
TBK N3 C23 SINGLE NONE 14
TBK C19 C18 DOUBLE NONE 15
TBK C19 C22 SINGLE NONE 16
TBK C23 C22 SINGLE NONE 17
TBK C18 C17 SINGLE NONE 18
TBK C22 C21 DOUBLE NONE 19
TBK C7 C8 SINGLE NONE 20
TBK C7 C6 SINGLE NONE 21
TBK C8 C3 SINGLE NONE 22
TBK C17 C20 DOUBLE NONE 23
TBK C17 C SINGLE NONE 24
TBK C21 C20 SINGLE NONE 25
TBK O C DOUBLE NONE 26
TBK C6 N2 SINGLE NONE 27
TBK C N SINGLE NONE 28
TBK C3 N1 SINGLE BEGINWEDGE 29
TBK C3 C4 SINGLE NONE 30
TBK N1 C2 SINGLE NONE 31
TBK N C1 SINGLE NONE 32
TBK C4 N2 SINGLE NONE 33
TBK N2 S SINGLE NONE 34
TBK C1 C2 SINGLE NONE 35
TBK C1 C9 SINGLE BEGINDASH 36
TBK C2 O3 DOUBLE NONE 37
TBK C13 C12 SINGLE NONE 38
TBK C13 C14 SINGLE NONE 39
TBK O2 S DOUBLE NONE 40
TBK S O1 DOUBLE NONE 41
TBK S C5 SINGLE NONE 42
TBK C12 C11 SINGLE NONE 43
TBK C11 C10 SINGLE NONE 44
TBK C11 C16 SINGLE NONE 45
TBK C14 C15 SINGLE NONE 46
TBK C10 C9 SINGLE NONE 47
TBK C15 C16 SINGLE NONE 48
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
TBK MurckoScaffold S1 scaffold 'O=C(N[C@@H](CCC1CCCCC1)C(=O)N[C@H]1CCCNC1)c1ccc(CNC(=O)c2cnc3ccccn23)cc1' InChI=1S/C31H40N6O3/c38-29(36-26(16-13-22-7-2-1-3-8-22)30(39)35-25-9-6-17-32-20-25)24-14-11-23(12-15-24)19-34-31(40)27-21-33-28-10-4-5-18-37(27)28/h4-5,10-12,14-15,18,21-22,25-26,32H,1-3,6-9,13,16-17,19-20H2,(H,34,40)(H,35,39)(H,36,38)/t25-,26-/m0/s1 CJORNUGYMBIJKA-UIOOFZCWSA-N
TBK amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
TBK cyclohexane F2 fragment C1CCCCC1 InChI=1S/C6H12/c1-2-4-6-5-3-1/h1-6H2 XDTMQSROBMDMFD-UHFFFAOYSA-N
TBK imidazole F3 fragment 'c1c[nH]cn1' InChI=1S/C3H4N2/c1-2-5-3-4-1/h1-3H,(H,4,5) RAXXELZNTBOGNW-UHFFFAOYSA-N
TBK peptide F4 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
TBK phenyl F5 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
TBK pyridine F6 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
TBK C1 S1 1
TBK C3 S1 1
TBK C6 S1 1
TBK N2 S1 1
TBK N4 S1 1
TBK C28 S1 1
TBK C27 S1 1
TBK C26 S1 1
TBK C29 S1 1
TBK C30 S1 1
TBK C24 S1 1
TBK C20 S1 1
TBK C13 S1 1
TBK C12 S1 1
TBK C9 S1 1
TBK N S1 1
TBK C S1 1
TBK O S1 1
TBK C10 S1 1
TBK C11 S1 1
TBK C14 S1 1
TBK C15 S1 1
TBK C16 S1 1
TBK C17 S1 1
TBK C18 S1 1
TBK C19 S1 1
TBK C2 S1 1
TBK C21 S1 1
TBK C22 S1 1
TBK C23 S1 1
TBK C25 S1 1
TBK C31 S1 1
TBK C4 S1 1
TBK C7 S1 1
TBK C8 S1 1
TBK N1 S1 1
TBK N3 S1 1
TBK N5 S1 1
TBK O3 S1 1
TBK O4 S1 1
TBK N F1 1
TBK C F1 1
TBK O F1 1
TBK C17 F1 1
TBK N1 F1 2
TBK C2 F1 2
TBK O3 F1 2
TBK C1 F1 2
TBK N3 F1 3
TBK C24 F1 3
TBK O4 F1 3
TBK C25 F1 3
TBK C13 F2 1
TBK C12 F2 1
TBK C11 F2 1
TBK C16 F2 1
TBK C15 F2 1
TBK C14 F2 1
TBK C26 F3 1
TBK C25 F3 1
TBK N5 F3 1
TBK C27 F3 1
TBK N4 F3 1
TBK O3 F4 1
TBK C2 F4 1
TBK C1 F4 1
TBK N F4 1
TBK C20 F5 1
TBK C17 F5 1
TBK C18 F5 1
TBK C19 F5 1
TBK C22 F5 1
TBK C21 F5 1
TBK C28 F6 1
TBK C29 F6 1
TBK C30 F6 1
TBK C31 F6 1
TBK C27 F6 1
TBK N5 F6 1
#
_pdbe_chem_comp_rdkit_properties.comp_id TBK
_pdbe_chem_comp_rdkit_properties.exactmw 622.294
_pdbe_chem_comp_rdkit_properties.amw 622.792
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 11
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 12
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 7
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 44
_pdbe_chem_comp_rdkit_properties.NumAtoms 86
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 12
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 3
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.500
_pdbe_chem_comp_rdkit_properties.NumRings 5
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 2
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 2
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 317.586
_pdbe_chem_comp_rdkit_properties.tpsa 141.980
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.885
_pdbe_chem_comp_rdkit_properties.CrippenMR 165.548
_pdbe_chem_comp_rdkit_properties.chi0v 21.949
_pdbe_chem_comp_rdkit_properties.chi1v 12.679
_pdbe_chem_comp_rdkit_properties.chi2v 5.303
_pdbe_chem_comp_rdkit_properties.chi3v 5.303
_pdbe_chem_comp_rdkit_properties.chi4v 3.165
_pdbe_chem_comp_rdkit_properties.chi0n 63.133
_pdbe_chem_comp_rdkit_properties.chi1n 32.081
_pdbe_chem_comp_rdkit_properties.chi2n 4.640
_pdbe_chem_comp_rdkit_properties.chi3n 4.640
_pdbe_chem_comp_rdkit_properties.chi4n 2.792
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.770
_pdbe_chem_comp_rdkit_properties.kappa1 8.327
_pdbe_chem_comp_rdkit_properties.kappa2 14.341
_pdbe_chem_comp_rdkit_properties.kappa3 8.232
_pdbe_chem_comp_rdkit_properties.Phi 2.714
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
TBK UniChem PDBe TBK
TBK UniChem PubChem 155803658
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
TBK C1 -2.465 1.709 -0.080 ETKDGv3 1
TBK C3 -0.464 -1.342 -1.420 ETKDGv3 2
TBK C5 -0.849 -3.756 1.242 ETKDGv3 3
TBK C6 1.011 -3.643 -1.688 ETKDGv3 4
TBK N2 1.329 -2.844 -0.484 ETKDGv3 5
TBK N4 4.647 -3.627 -1.828 ETKDGv3 6
TBK C28 4.626 -4.910 1.535 ETKDGv3 7
TBK C27 4.542 -4.539 -0.917 ETKDGv3 8
TBK C26 4.813 -2.407 -1.091 ETKDGv3 9
TBK C29 4.495 -6.231 1.325 ETKDGv3 10
TBK C30 4.362 -6.778 -0.060 ETKDGv3 11
TBK C24 4.908 -1.648 1.299 ETKDGv3 12
TBK C20 1.411 1.110 2.900 ETKDGv3 13
TBK C13 -5.432 6.408 -0.443 ETKDGv3 14
TBK C12 -4.565 5.703 0.613 ETKDGv3 15
TBK C9 -2.992 2.569 -1.249 ETKDGv3 16
TBK N -1.237 2.270 0.490 ETKDGv3 17
TBK C -0.631 1.685 1.652 ETKDGv3 18
TBK O -1.370 1.224 2.564 ETKDGv3 19
TBK C10 -3.332 4.028 -0.875 ETKDGv3 20
TBK C11 -4.338 4.207 0.296 ETKDGv3 21
TBK C14 -6.763 5.677 -0.650 ETKDGv3 22
TBK C15 -6.540 4.202 -1.004 ETKDGv3 23
TBK C16 -5.696 3.503 0.070 ETKDGv3 24
TBK C17 0.845 1.562 1.763 ETKDGv3 25
TBK C18 1.721 1.844 0.593 ETKDGv3 26
TBK C19 3.040 1.641 0.668 ETKDGv3 27
TBK C2 -2.198 0.306 -0.559 ETKDGv3 28
TBK C21 2.868 0.880 2.977 ETKDGv3 29
TBK C22 3.650 1.126 1.914 ETKDGv3 30
TBK C23 5.116 0.795 1.932 ETKDGv3 31
TBK C25 4.809 -2.649 0.220 ETKDGv3 32
TBK C31 4.387 -5.977 -1.140 ETKDGv3 33
TBK C4 0.742 -1.481 -0.472 ETKDGv3 34
TBK C7 1.016 -2.772 -2.949 ETKDGv3 35
TBK C8 -0.043 -1.655 -2.870 ETKDGv3 36
TBK N1 -1.021 0.010 -1.329 ETKDGv3 37
TBK N3 5.378 -0.320 1.026 ETKDGv3 38
TBK N5 4.619 -4.042 0.398 ETKDGv3 39
TBK O1 1.582 -3.087 2.144 ETKDGv3 40
TBK O2 1.401 -5.149 0.845 ETKDGv3 41
TBK O3 -3.022 -0.608 -0.283 ETKDGv3 42
TBK O4 4.566 -1.963 2.469 ETKDGv3 43
TBK S 0.913 -3.732 0.963 ETKDGv3 44
TBK H1 -3.244 1.661 0.711 ETKDGv3 45
TBK H2 -1.232 -2.086 -1.119 ETKDGv3 46
TBK H3 -1.224 -2.724 1.397 ETKDGv3 47
TBK H4 -1.068 -4.358 2.148 ETKDGv3 48
TBK H5 -1.365 -4.211 0.373 ETKDGv3 49
TBK H6 1.772 -4.443 -1.805 ETKDGv3 50
TBK H7 0.018 -4.135 -1.595 ETKDGv3 51
TBK H8 4.732 -4.520 2.538 ETKDGv3 52
TBK H9 4.900 -1.434 -1.555 ETKDGv3 53
TBK H10 4.490 -6.910 2.167 ETKDGv3 54
TBK H11 4.250 -7.846 -0.193 ETKDGv3 55
TBK H12 0.809 0.875 3.769 ETKDGv3 56
TBK H13 -5.638 7.446 -0.106 ETKDGv3 57
TBK H14 -4.886 6.476 -1.407 ETKDGv3 58
TBK H15 -5.067 5.790 1.602 ETKDGv3 59
TBK H16 -3.589 6.229 0.698 ETKDGv3 60
TBK H17 -3.888 2.084 -1.694 ETKDGv3 61
TBK H18 -2.223 2.595 -2.053 ETKDGv3 62
TBK H19 -0.726 3.023 -0.022 ETKDGv3 63
TBK H20 -3.722 4.521 -1.789 ETKDGv3 64
TBK H21 -2.390 4.557 -0.618 ETKDGv3 65
TBK H22 -3.877 3.768 1.206 ETKDGv3 66
TBK H23 -7.328 6.170 -1.470 ETKDGv3 67
TBK H24 -7.374 5.748 0.277 ETKDGv3 68
TBK H25 -6.045 4.120 -1.995 ETKDGv3 69
TBK H26 -7.526 3.695 -1.078 ETKDGv3 70
TBK H27 -6.264 3.510 1.027 ETKDGv3 71
TBK H28 -5.557 2.437 -0.198 ETKDGv3 72
TBK H29 1.308 2.184 -0.346 ETKDGv3 73
TBK H30 3.661 1.832 -0.198 ETKDGv3 74
TBK H31 3.286 0.478 3.892 ETKDGv3 75
TBK H32 5.686 1.687 1.592 ETKDGv3 76
TBK H33 5.475 0.544 2.954 ETKDGv3 77
TBK H34 4.300 -6.383 -2.140 ETKDGv3 78
TBK H35 1.532 -0.767 -0.792 ETKDGv3 79
TBK H36 0.449 -1.168 0.554 ETKDGv3 80
TBK H37 2.026 -2.319 -3.062 ETKDGv3 81
TBK H38 0.828 -3.406 -3.842 ETKDGv3 82
TBK H39 0.370 -0.744 -3.358 ETKDGv3 83
TBK H40 -0.946 -1.958 -3.444 ETKDGv3 84
TBK H41 -0.434 0.807 -1.665 ETKDGv3 85
TBK H42 5.878 -0.121 0.130 ETKDGv3 86
#