data_TC7
#
_chem_comp.id TC7
_chem_comp.name 2,4,5-trichlorophenol
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C6 H3 Cl3 O"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2007-09-20
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag ?
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 197.446
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code TC7
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 2VCE
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
TC7 C1 C1 C 0 1 Y N N N N N 15.043 26.655 28.846 15.043 26.655 28.846 C1 TC7 1
TC7 C2 C2 C 0 1 Y N N N N N 13.921 27.451 28.940 13.921 27.451 28.940 C2 TC7 2
TC7 C3 C3 C 0 1 Y N N N N N 13.887 28.626 28.213 13.887 28.626 28.213 C3 TC7 3
TC7 C4 C4 C 0 1 Y N N N N N 14.989 28.980 27.416 14.989 28.980 27.416 C4 TC7 4
TC7 C5 C5 C 0 1 Y N N N N N 16.125 28.210 27.338 16.125 28.210 27.338 C5 TC7 5
TC7 C6 C6 C 0 1 Y N N N N N 16.113 27.034 28.073 16.113 27.034 28.073 C6 TC7 6
TC7 CL1 CL1 CL 0 0 N N N N N N 15.090 30.466 26.471 15.090 30.466 26.471 CL1 TC7 7
TC7 CL3 CL3 CL 0 0 N N N N N N 17.578 26.040 27.933 17.578 26.040 27.933 CL3 TC7 8
TC7 O1 O1 O 0 1 N N N N N N 12.770 29.385 28.297 12.770 29.385 28.297 O1 TC7 9
TC7 CL5 CL5 CL 0 0 N N N N N N 15.109 25.160 29.797 15.109 25.160 29.797 CL5 TC7 10
TC7 H5 H5 H 0 1 N N N N N N 16.976 28.503 26.740 16.976 28.503 26.740 H5 TC7 11
TC7 H2 H2 H 0 1 N N N N N N 13.089 27.163 29.566 13.089 27.163 29.566 H2 TC7 12
TC7 H1 H1 H 0 1 N N N N N N 12.575 29.563 29.210 12.575 29.563 29.210 H1 TC7 13
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
TC7 C4 C5 SING Y N 1
TC7 C4 C3 DOUB Y N 2
TC7 C4 CL1 SING N N 3
TC7 C5 C6 DOUB Y N 4
TC7 C6 C1 SING Y N 5
TC7 C6 CL3 SING N N 6
TC7 C1 C2 DOUB Y N 7
TC7 C1 CL5 SING N N 8
TC7 C2 C3 SING Y N 9
TC7 C3 O1 SING N N 10
TC7 C5 H5 SING N N 11
TC7 C2 H2 SING N N 12
TC7 O1 H1 SING N N 13
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
TC7 SMILES ACDLabs 10.04 Clc1cc(O)c(Cl)cc1Cl
TC7 SMILES_CANONICAL CACTVS 3.341 Oc1cc(Cl)c(Cl)cc1Cl
TC7 SMILES CACTVS 3.341 Oc1cc(Cl)c(Cl)cc1Cl
TC7 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 c1c(c(cc(c1Cl)Cl)Cl)O
TC7 SMILES "OpenEye OEToolkits" 1.5.0 c1c(c(cc(c1Cl)Cl)Cl)O
TC7 InChI InChI 1.03 InChI=1S/C6H3Cl3O/c7-3-1-5(9)6(10)2-4(3)8/h1-2,10H
TC7 InChIKey InChI 1.03 LHJGJYXLEPZJPM-UHFFFAOYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
TC7 "SYSTEMATIC NAME" ACDLabs 10.04 2,4,5-trichlorophenol
TC7 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 2,4,5-trichlorophenol
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
TC7 'Create component' 2007-09-20 RCSB
TC7 'Modify aromatic_flag' 2011-06-04 RCSB
TC7 'Modify descriptor' 2011-06-04 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
TC7 C1 C 6.897 -0.983 1
TC7 C2 C 6.897 0.517 2
TC7 C3 C 5.598 1.268 3
TC7 C4 C 4.299 0.517 4
TC7 C5 C 4.299 -0.983 5
TC7 C6 C 5.598 -1.732 6
TC7 CL1 Cl 3.000 1.268 7
TC7 CL3 Cl 5.598 -3.232 8
TC7 O1 O 5.598 2.768 9
TC7 CL5 Cl 8.196 -1.732 10
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
TC7 C4 C5 DOUBLE NONE 1
TC7 C4 C3 SINGLE NONE 2
TC7 C4 CL1 SINGLE NONE 3
TC7 C5 C6 SINGLE NONE 4
TC7 C6 C1 DOUBLE NONE 5
TC7 C6 CL3 SINGLE NONE 6
TC7 C1 C2 SINGLE NONE 7
TC7 C1 CL5 SINGLE NONE 8
TC7 C2 C3 DOUBLE NONE 9
TC7 C3 O1 SINGLE NONE 10
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
TC7 MurckoScaffold S1 scaffold c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
TC7 phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
TC7 C1 S1 1
TC7 C2 S1 1
TC7 C3 S1 1
TC7 C4 S1 1
TC7 C5 S1 1
TC7 C6 S1 1
TC7 C1 F1 1
TC7 C6 F1 1
TC7 C5 F1 1
TC7 C4 F1 1
TC7 C3 F1 1
TC7 C2 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id TC7
_pdbe_chem_comp_rdkit_properties.exactmw 195.925
_pdbe_chem_comp_rdkit_properties.amw 197.448
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 1
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 1
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 1
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 10
_pdbe_chem_comp_rdkit_properties.NumAtoms 13
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 4
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 77.437
_pdbe_chem_comp_rdkit_properties.tpsa 20.230
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.890
_pdbe_chem_comp_rdkit_properties.CrippenMR 42.527
_pdbe_chem_comp_rdkit_properties.chi0v 6.810
_pdbe_chem_comp_rdkit_properties.chi1v 3.405
_pdbe_chem_comp_rdkit_properties.chi2v 1.765
_pdbe_chem_comp_rdkit_properties.chi3v 1.765
_pdbe_chem_comp_rdkit_properties.chi4v 0.882
_pdbe_chem_comp_rdkit_properties.chi0n 7.542
_pdbe_chem_comp_rdkit_properties.chi1n 3.679
_pdbe_chem_comp_rdkit_properties.chi2n 0.835
_pdbe_chem_comp_rdkit_properties.chi3n 0.835
_pdbe_chem_comp_rdkit_properties.chi4n 0.417
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.110
_pdbe_chem_comp_rdkit_properties.kappa1 4.704
_pdbe_chem_comp_rdkit_properties.kappa2 2.868
_pdbe_chem_comp_rdkit_properties.kappa3 1.483
_pdbe_chem_comp_rdkit_properties.Phi 1.349
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
TC7 UniChem ChEMBL CHEMBL109095
TC7 UniChem PDBe TC7
TC7 UniChem 'KEGG LIGAND' C07101
TC7 UniChem ChEBI 28520
TC7 UniChem ZINC ZINC000000002215
TC7 UniChem fdasrs 32526637PN
TC7 UniChem BRENDA 221546
TC7 UniChem BRENDA 8999
TC7 UniChem ChemicalBook CB3714348
TC7 UniChem 'Probes And Drugs' PD014785
TC7 UniChem 'EPA CompTox Dashboard' DTXSID4024359
TC7 UniChem eMolecules 483850
TC7 UniChem SureChEMBL SCHEMBL1338
TC7 UniChem 'PubChem TPHARMA' 14773044
TC7 UniChem PubChem 7271
TC7 UniChem Mcule MCULE-2465514202
TC7 UniChem NMRShiftDB 10015996
TC7 UniChem ACTor 77001-45-7
TC7 UniChem ACTor 95-95-4
TC7 UniChem Nikkaji J3.574B
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
TC7 C1 -1.366 -0.800 -0.187 ETKDGv3 1
TC7 C2 -0.005 -1.356 -0.030 ETKDGv3 2
TC7 C3 1.050 -0.543 0.119 ETKDGv3 3
TC7 C4 0.848 0.930 0.126 ETKDGv3 4
TC7 C5 -0.387 1.433 -0.017 ETKDGv3 5
TC7 C6 -1.549 0.533 -0.181 ETKDGv3 6
TC7 CL1 2.203 2.032 0.318 ETKDGv3 7
TC7 CL3 -3.146 1.247 -0.365 ETKDGv3 8
TC7 O1 2.319 -1.102 0.265 ETKDGv3 9
TC7 CL5 -2.713 -1.915 -0.379 ETKDGv3 10
TC7 H5 -0.540 2.505 -0.013 ETKDGv3 11
TC7 H2 0.137 -2.429 -0.035 ETKDGv3 12
TC7 H1 3.149 -0.534 0.381 ETKDGv3 13
#