data_TH4
#
_chem_comp.id TH4
_chem_comp.name {(2Z)-3-[(6-chloropyridin-3-yl)methyl]-1,3-thiazolidin-2-ylidene}cyanamide
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C10 H9 Cl N4 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2008-02-11
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 252.723
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code TH4
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3C84
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
TH4 C5 C5 C 0 1 Y N N N N N -12.587 20.427 59.561 -1.762 1.515 -0.634 C5 TH4 1
TH4 C6 C6 C 0 1 Y N N N N N -11.601 20.421 58.551 -2.971 1.179 -0.047 C6 TH4 2
TH4 C1 C1 C 0 1 Y N N N N N -10.365 19.771 58.715 -3.283 -0.157 0.136 C1 TH4 3
TH4 CL7 CL7 CL 0 0 N N N N N N -9.276 19.775 57.560 -4.795 -0.593 0.869 CL7 TH4 4
TH4 N2 N2 N 0 1 Y N N N N N -10.175 19.175 59.919 -2.444 -1.103 -0.241 N2 TH4 5
TH4 C3 C3 C 0 1 Y N N N N N -11.035 19.180 60.918 -1.285 -0.818 -0.803 C3 TH4 6
TH4 C4 C4 C 0 1 Y N N N N N -12.306 19.810 60.772 -0.907 0.493 -1.017 C4 TH4 7
TH4 C8 C8 C 0 1 N N N N N N -13.382 19.817 61.883 0.417 0.808 -1.664 C8 TH4 8
TH4 N9 N9 N 0 1 N N N N N N -12.795 19.721 63.234 1.446 0.946 -0.631 N9 TH4 9
TH4 C13 C13 C 0 1 N N N N N N -12.839 18.449 64.011 1.715 2.228 -0.019 C13 TH4 10
TH4 C12 C12 C 0 1 N N N N N N -12.638 18.819 65.487 2.826 2.138 1.033 C12 TH4 11
TH4 S11 S11 S 0 1 N N N N N N -11.569 20.300 65.388 3.312 0.384 1.023 S11 TH4 12
TH4 C10 C10 C 0 1 N N N N N N -12.163 20.760 63.839 2.163 -0.122 -0.221 C10 TH4 13
TH4 N14 N14 N 0 1 N N N N N N -12.043 21.948 63.252 2.029 -1.355 -0.681 N14 TH4 14
TH4 C15 C15 C 0 1 N N N N N N -11.451 22.979 63.805 2.808 -2.349 -0.191 C15 TH4 15
TH4 N16 N16 N 0 1 N N N N N N -10.963 23.916 64.237 3.462 -3.183 0.219 N16 TH4 16
TH4 H5 H5 H 0 1 N N N N N N -13.542 20.903 59.395 -1.494 2.549 -0.793 H5 TH4 17
TH4 H6 H6 H 0 1 N N N N N N -11.803 20.933 57.621 -3.662 1.949 0.264 H6 TH4 18
TH4 H3 H3 H 0 1 N N N N N N -10.776 18.704 61.852 -0.624 -1.620 -1.099 H3 TH4 19
TH4 H8 H8 H 0 1 N N N N N N -13.949 20.757 61.814 0.691 0.001 -2.344 H8 TH4 20
TH4 H8A H8A H 0 1 N N N N N N -14.028 18.939 61.733 0.335 1.741 -2.223 H8A TH4 21
TH4 H13 H13 H 0 1 N N N N N N -13.809 17.949 63.871 2.015 2.934 -0.793 H13 TH4 22
TH4 H13A H13A H 0 0 N N N N N N -12.056 17.755 63.671 0.804 2.592 0.457 H13A TH4 23
TH4 H12 H12 H 0 1 N N N N N N -13.593 19.037 65.987 3.670 2.769 0.752 H12 TH4 24
TH4 H12A H12A H 0 0 N N N N N N -12.198 18.005 66.082 2.447 2.425 2.014 H12A TH4 25
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
TH4 C6 C5 DOUB Y N 1
TH4 C5 C4 SING Y N 2
TH4 C5 H5 SING N N 3
TH4 C6 C1 SING Y N 4
TH4 C6 H6 SING N N 5
TH4 CL7 C1 SING N N 6
TH4 C1 N2 DOUB Y N 7
TH4 N2 C3 SING Y N 8
TH4 C4 C3 DOUB Y N 9
TH4 C3 H3 SING N N 10
TH4 C4 C8 SING N N 11
TH4 C8 N9 SING N N 12
TH4 C8 H8 SING N N 13
TH4 C8 H8A SING N N 14
TH4 N9 C10 SING N N 15
TH4 N9 C13 SING N N 16
TH4 C13 C12 SING N N 17
TH4 C13 H13 SING N N 18
TH4 C13 H13A SING N N 19
TH4 S11 C12 SING N N 20
TH4 C12 H12 SING N N 21
TH4 C12 H12A SING N N 22
TH4 C10 S11 SING N N 23
TH4 N14 C10 DOUB N N 24
TH4 N14 C15 SING N N 25
TH4 C15 N16 TRIP N N 26
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
TH4 SMILES ACDLabs 10.04 "Clc1ncc(cc1)CN2C(=N\C#N)\SCC2"
TH4 SMILES_CANONICAL CACTVS 3.341 "Clc1ccc(CN2CCSC2=NC#N)cn1"
TH4 SMILES CACTVS 3.341 "Clc1ccc(CN2CCSC2=NC#N)cn1"
TH4 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1cc(ncc1CN\2CCS/C2=N\C#N)Cl"
TH4 SMILES "OpenEye OEToolkits" 1.5.0 "c1cc(ncc1CN2CCSC2=NC#N)Cl"
TH4 InChI InChI 1.03 InChI=1S/C10H9ClN4S/c11-9-2-1-8(5-13-9)6-15-3-4-16-10(15)14-7-12/h1-2,5H,3-4,6H2/b14-10-
TH4 InChIKey InChI 1.03 HOKKPVIRMVDYPB-UVTDQMKNSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
TH4 "SYSTEMATIC NAME" ACDLabs 10.04 {(2Z)-3-[(6-chloropyridin-3-yl)methyl]-1,3-thiazolidin-2-ylidene}cyanamide
TH4 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (Z)-[3-[(6-chloropyridin-3-yl)methyl]-1,3-thiazolidin-2-ylidene]cyanamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
TH4 'Create component' 2008-02-11 RCSB
TH4 'Modify aromatic_flag' 2011-06-04 RCSB
TH4 'Modify descriptor' 2011-06-04 RCSB
#
_pdbe_chem_comp_drugbank_details.comp_id TH4
_pdbe_chem_comp_drugbank_details.drugbank_id DB08620
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name Thiacloprid
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number 111988-49-9
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
_pdbe_chem_comp_synonyms.comp_id TH4
_pdbe_chem_comp_synonyms.name (Z)-thiacloprid
_pdbe_chem_comp_synonyms.provenance DrugBank
_pdbe_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_drugbank_classification.comp_id TH4
_pdbe_chem_comp_drugbank_classification.drugbank_id DB08620
_pdbe_chem_comp_drugbank_classification.parent 2-halopyridines
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Pyridines and derivatives'
_pdbe_chem_comp_drugbank_classification.superclass 'Organoheterocyclic compounds'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as 2-halopyridines. These are organic compounds containing a pyridine ring substituted at the 2-position by a halogen atom.'
#
_pdbe_chem_comp_drugbank_targets.comp_id TH4
_pdbe_chem_comp_drugbank_targets.drugbank_id DB08620
_pdbe_chem_comp_drugbank_targets.name 'CHRNA7-FAM7A fusion protein'
_pdbe_chem_comp_drugbank_targets.organism Humans
_pdbe_chem_comp_drugbank_targets.uniprot_id Q494W8
_pdbe_chem_comp_drugbank_targets.pharmacologically_active unknown
_pdbe_chem_comp_drugbank_targets.ordinal 1
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
TH4 C5 C 2.007 0.653 1
TH4 C6 C 3.311 1.394 2
TH4 C1 C 3.321 2.894 3
TH4 CL7 Cl 4.624 3.636 4
TH4 N2 N 2.026 3.653 5
TH4 C3 C 0.723 2.911 6
TH4 C4 C 0.713 1.411 7
TH4 C8 C -0.591 0.669 8
TH4 N9 N -0.600 -0.831 9
TH4 C13 C 0.608 -1.720 10
TH4 C12 C 0.135 -3.144 11
TH4 S11 S -1.365 -3.134 12
TH4 C10 C -1.820 -1.705 13
TH4 N14 N -3.243 -1.232 14
TH4 C15 C -4.364 -2.229 15
TH4 N16 N -5.485 -3.225 16
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
TH4 C6 C5 DOUBLE NONE 1
TH4 C5 C4 SINGLE NONE 2
TH4 C6 C1 SINGLE NONE 3
TH4 CL7 C1 SINGLE NONE 4
TH4 C1 N2 DOUBLE NONE 5
TH4 N2 C3 SINGLE NONE 6
TH4 C4 C3 DOUBLE NONE 7
TH4 C4 C8 SINGLE NONE 8
TH4 C8 N9 SINGLE NONE 9
TH4 N9 C10 SINGLE ENDDOWNRIGHT 10
TH4 N9 C13 SINGLE NONE 11
TH4 C13 C12 SINGLE NONE 12
TH4 S11 C12 SINGLE NONE 13
TH4 C10 S11 SINGLE ENDDOWNRIGHT 14
TH4 N14 C10 DOUBLE NONE 15
TH4 N14 C15 SINGLE ENDDOWNRIGHT 16
TH4 C15 N16 TRIPLE NONE 17
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
TH4 MurckoScaffold S1 scaffold N=C1SCCN1Cc1cccnc1 InChI=1S/C9H11N3S/c10-9-12(4-5-13-9)7-8-2-1-3-11-6-8/h1-3,6,10H,4-5,7H2 RMVDUSVERNRVQT-UHFFFAOYSA-N
TH4 pyridine F1 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
TH4 C5 S1 1
TH4 C6 S1 1
TH4 C1 S1 1
TH4 N2 S1 1
TH4 C3 S1 1
TH4 C4 S1 1
TH4 C8 S1 1
TH4 N9 S1 1
TH4 C13 S1 1
TH4 C12 S1 1
TH4 S11 S1 1
TH4 C10 S1 1
TH4 N14 S1 1
TH4 C1 F1 1
TH4 C6 F1 1
TH4 C5 F1 1
TH4 C4 F1 1
TH4 C3 F1 1
TH4 N2 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id TH4
_pdbe_chem_comp_rdkit_properties.exactmw 252.024
_pdbe_chem_comp_rdkit_properties.amw 252.730
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 0
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 2
_pdbe_chem_comp_rdkit_properties.NumHBD 0
_pdbe_chem_comp_rdkit_properties.NumHBA 4
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 16
_pdbe_chem_comp_rdkit_properties.NumAtoms 25
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 6
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.300
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 115.589
_pdbe_chem_comp_rdkit_properties.tpsa 52.280
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.066
_pdbe_chem_comp_rdkit_properties.CrippenMR 64.897
_pdbe_chem_comp_rdkit_properties.chi0v 9.147
_pdbe_chem_comp_rdkit_properties.chi1v 5.081
_pdbe_chem_comp_rdkit_properties.chi2v 2.246
_pdbe_chem_comp_rdkit_properties.chi3v 2.246
_pdbe_chem_comp_rdkit_properties.chi4v 1.425
_pdbe_chem_comp_rdkit_properties.chi0n 16.575
_pdbe_chem_comp_rdkit_properties.chi1n 8.386
_pdbe_chem_comp_rdkit_properties.chi2n 1.417
_pdbe_chem_comp_rdkit_properties.chi3n 1.417
_pdbe_chem_comp_rdkit_properties.chi4n 0.839
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.250
_pdbe_chem_comp_rdkit_properties.kappa1 4.552
_pdbe_chem_comp_rdkit_properties.kappa2 5.191
_pdbe_chem_comp_rdkit_properties.kappa3 2.655
_pdbe_chem_comp_rdkit_properties.Phi 1.477
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
TH4 UniChem ChEMBL CHEMBL451432
TH4 UniChem DrugBank DB08620
TH4 UniChem PDBe TH4
TH4 UniChem 'KEGG LIGAND' C18512
TH4 UniChem ChEBI 39176
TH4 UniChem ZINC ZINC000013828082
TH4 UniChem fdasrs DSV3A944A4
TH4 UniChem ACTor 111988-49-9
TH4 UniChem BindingDb 50251868
TH4 UniChem BRENDA 134795
TH4 UniChem MedChemExpress HY-B1953
TH4 UniChem 'Probes And Drugs' PD004273
TH4 UniChem 'EPA CompTox Dashboard' DTXSID7034961
TH4 UniChem SureChEMBL SCHEMBL26490
TH4 UniChem 'PubChem TPHARMA' 14823507
TH4 UniChem Nikkaji J1.459.101J
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
TH4 C5 1.995 -0.937 0.108 ETKDGv3 1
TH4 C6 3.056 -0.832 -0.698 ETKDGv3 2
TH4 C1 3.530 0.507 -1.098 ETKDGv3 3
TH4 CL7 4.920 0.671 -2.151 ETKDGv3 4
TH4 N2 2.915 1.571 -0.669 ETKDGv3 5
TH4 C3 1.769 1.484 0.196 ETKDGv3 6
TH4 C4 1.309 0.284 0.592 ETKDGv3 7
TH4 C8 0.091 0.164 1.466 ETKDGv3 8
TH4 N9 -1.076 -0.200 0.660 ETKDGv3 9
TH4 C13 -1.623 -1.547 0.630 ETKDGv3 10
TH4 C12 -2.964 -1.489 -0.111 ETKDGv3 11
TH4 S11 -2.919 -0.115 -1.314 ETKDGv3 12
TH4 C10 -1.710 0.674 -0.265 ETKDGv3 13
TH4 N14 -1.491 1.954 -0.253 ETKDGv3 14
TH4 C15 -2.139 2.851 -1.116 ETKDGv3 15
TH4 N16 -2.673 3.591 -1.828 ETKDGv3 16
TH4 H5 1.640 -1.915 0.405 ETKDGv3 17
TH4 H6 3.562 -1.721 -1.054 ETKDGv3 18
TH4 H3 1.283 2.396 0.519 ETKDGv3 19
TH4 H8 0.278 -0.616 2.235 ETKDGv3 20
TH4 H8A -0.112 1.110 2.013 ETKDGv3 21
TH4 H13 -0.921 -2.215 0.086 ETKDGv3 22
TH4 H13A -1.771 -1.930 1.663 ETKDGv3 23
TH4 H12 -3.783 -1.293 0.615 ETKDGv3 24
TH4 H12A -3.167 -2.448 -0.632 ETKDGv3 25
#