data_THP
#
_chem_comp.id THP
_chem_comp.name "THYMIDINE-3',5'-DIPHOSPHATE"
_chem_comp.type "DNA LINKING"
_chem_comp.pdbx_type ATOMN
_chem_comp.formula "C10 H16 N2 O11 P2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces PTP
_chem_comp.formula_weight 402.188
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code THP
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1STG
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
THP P2 P2 P 0 1 N N N N N N 6.290 13.958 20.661 2.694 0.181 -3.289 P2 THP 1
THP O4P O4P O 0 1 N N N N N N 5.063 13.885 19.838 2.796 1.567 -2.780 O4P THP 2
THP O5P O5P O 0 1 N N N N N N 7.490 14.673 20.175 4.162 -0.358 -3.670 O5P THP 3
THP O6P O6P O 0 1 N N N N N N 6.701 12.473 21.063 1.757 0.158 -4.598 O6P THP 4
THP P1 P1 P 0 1 N N N N N N 5.064 11.601 26.444 -3.072 0.194 -1.973 P1 THP 5
THP O1P O1P O 0 1 N N N N N N 4.651 11.241 27.804 -2.106 1.046 -2.701 O1P THP 6
THP O2P O2P O 0 1 N N N N N N 6.411 11.514 25.849 -4.201 -0.330 -2.994 O2P THP 7
THP O3P O3P O 0 1 N N N N N N 4.119 10.747 25.471 -3.766 1.050 -0.799 O3P THP 8
THP "O5'" O5* O 0 1 N N N N N N 5.894 14.579 22.057 2.053 -0.761 -2.153 "O5'" THP 9
THP "C5'" C5* C 0 1 N N N N N N 4.863 14.017 22.822 0.758 -0.233 -1.859 "C5'" THP 10
THP "C4'" C4* C 0 1 N N R N N N 5.276 14.110 24.267 0.091 -1.088 -0.780 "C4'" THP 11
THP "O4'" O4* O 0 1 N N N N N N 5.591 15.470 24.609 0.807 -0.985 0.471 "O4'" THP 12
THP "C3'" C3* C 0 1 N N S N N N 4.121 13.716 25.146 -1.317 -0.537 -0.441 "C3'" THP 13
THP "O3'" O3* O 0 1 N N N N N N 4.610 13.145 26.358 -2.300 -1.065 -1.333 "O3'" THP 14
THP "C2'" C2* C 0 1 N N N N N N 3.403 15.001 25.434 -1.534 -1.067 0.997 "C2'" THP 15
THP "C1'" C1* C 0 1 N N R N N N 4.563 15.983 25.466 -0.111 -1.363 1.509 "C1'" THP 16
THP N1 N1 N 0 1 N N N N N N 4.016 17.276 25.022 0.154 -0.582 2.719 N1 THP 17
THP C2 C2 C 0 1 N N N N N N 3.631 18.155 26.018 0.095 0.761 2.671 C2 THP 18
THP O2 O2 O 0 1 N N N N N N 3.818 17.953 27.207 -0.178 1.311 1.623 O2 THP 19
THP N3 N3 N 0 1 N N N N N N 3.022 19.309 25.624 0.335 1.503 3.768 N3 THP 20
THP C4 C4 C 0 1 N N N N N N 2.766 19.675 24.328 0.635 0.907 4.940 C4 THP 21
THP O4 O4 O 0 1 N N N N N N 2.158 20.720 24.135 0.852 1.579 5.933 O4 THP 22
THP C5 C5 C 0 1 N N N N N N 3.205 18.734 23.312 0.705 -0.504 5.003 C5 THP 23
THP C5M C5M C 0 1 N N N N N N 3.037 19.091 21.820 1.043 -1.195 6.299 C5M THP 24
THP C6 C6 C 0 1 N N N N N N 3.806 17.577 23.684 0.460 -1.225 3.888 C6 THP 25
THP HOP5 5HOP H 0 0 N N N N N N 8.278 14.719 20.703 4.509 0.232 -4.352 HOP5 THP 26
THP HOP6 6HOP H 0 0 N N N N N N 7.489 12.519 21.591 1.717 -0.760 -4.897 HOP6 THP 27
THP HOP2 2HOP H 0 0 N N N N N N 6.678 11.747 24.967 -4.638 0.453 -3.354 HOP2 THP 28
THP HOP3 3HOP H 0 0 N N N N N N 4.386 10.980 24.589 -4.386 0.459 -0.351 HOP3 THP 29
THP "H5'1" 1H5* H 0 0 N N N N N N 3.869 14.480 22.621 0.148 -0.245 -2.762 "H5'1" THP 30
THP "H5'2" 2H5* H 0 0 N N N N N N 4.603 12.978 22.508 0.857 0.791 -1.501 "H5'2" THP 31
THP "H4'" H4* H 0 1 N N N N N N 6.157 13.443 24.414 0.029 -2.128 -1.100 "H4'" THP 32
THP "H3'" H3* H 0 1 N N N N N N 3.456 12.960 24.665 -1.323 0.552 -0.458 "H3'" THP 33
THP "H2'1" 1H2* H 0 0 N N N N N N 2.578 15.257 24.728 -2.131 -1.979 0.981 "H2'1" THP 34
THP "H2'2" 2H2* H 0 0 N N N N N N 2.756 14.994 26.342 -2.012 -0.308 1.615 "H2'2" THP 35
THP "H1'" H1* H 0 1 N N N N N N 5.019 16.120 26.473 -0.009 -2.427 1.725 "H1'" THP 36
THP H3 H3 H 0 1 N N N N N N 2.733 19.952 26.360 0.288 2.471 3.716 H3 THP 37
THP H51 1H5 H 0 1 N N N N N N 3.373 18.368 21.040 1.206 -0.448 7.077 H51 THP 38
THP H52 2H5 H 0 1 N N N N N N 1.966 19.342 21.633 0.219 -1.847 6.589 H52 THP 39
THP H53 3H5 H 0 1 N N N N N N 3.530 20.073 21.631 1.948 -1.788 6.170 H53 THP 40
THP H6 H6 H 0 1 N N N N N N 4.125 16.876 22.893 0.505 -2.303 3.918 H6 THP 41
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
THP P2 O4P DOUB N N 1
THP P2 O5P SING N N 2
THP P2 O6P SING N N 3
THP P2 "O5'" SING N N 4
THP O5P HOP5 SING N N 5
THP O6P HOP6 SING N N 6
THP P1 O1P DOUB N N 7
THP P1 O2P SING N N 8
THP P1 O3P SING N N 9
THP P1 "O3'" SING N N 10
THP O2P HOP2 SING N N 11
THP O3P HOP3 SING N N 12
THP "O5'" "C5'" SING N N 13
THP "C5'" "C4'" SING N N 14
THP "C5'" "H5'1" SING N N 15
THP "C5'" "H5'2" SING N N 16
THP "C4'" "O4'" SING N N 17
THP "C4'" "C3'" SING N N 18
THP "C4'" "H4'" SING N N 19
THP "O4'" "C1'" SING N N 20
THP "C3'" "O3'" SING N N 21
THP "C3'" "C2'" SING N N 22
THP "C3'" "H3'" SING N N 23
THP "C2'" "C1'" SING N N 24
THP "C2'" "H2'1" SING N N 25
THP "C2'" "H2'2" SING N N 26
THP "C1'" N1 SING N N 27
THP "C1'" "H1'" SING N N 28
THP N1 C2 SING N N 29
THP N1 C6 SING N N 30
THP C2 O2 DOUB N N 31
THP C2 N3 SING N N 32
THP N3 C4 SING N N 33
THP N3 H3 SING N N 34
THP C4 O4 DOUB N N 35
THP C4 C5 SING N N 36
THP C5 C5M SING N N 37
THP C5 C6 DOUB N N 38
THP C5M H51 SING N N 39
THP C5M H52 SING N N 40
THP C5M H53 SING N N 41
THP C6 H6 SING N N 42
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
THP SMILES ACDLabs 10.04 O=C1NC(=O)N(C=C1C)C2OC(C(OP(=O)(O)O)C2)COP(=O)(O)O
THP SMILES_CANONICAL CACTVS 3.341 CC1=CN([C@H]2C[C@H](O[P](O)(O)=O)[C@@H](CO[P](O)(O)=O)O2)C(=O)NC1=O
THP SMILES CACTVS 3.341 CC1=CN([CH]2C[CH](O[P](O)(O)=O)[CH](CO[P](O)(O)=O)O2)C(=O)NC1=O
THP SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 CC1=CN(C(=O)NC1=O)[C@H]2C[C@@H]([C@H](O2)COP(=O)(O)O)OP(=O)(O)O
THP SMILES "OpenEye OEToolkits" 1.5.0 CC1=CN(C(=O)NC1=O)C2CC(C(O2)COP(=O)(O)O)OP(=O)(O)O
THP InChI InChI 1.03 InChI=1S/C10H16N2O11P2/c1-5-3-12(10(14)11-9(5)13)8-2-6(23-25(18,19)20)7(22-8)4-21-24(15,16)17/h3,6-8H,2,4H2,1H3,(H,11,13,14)(H2,15,16,17)(H2,18,19,20)/t6-,7+,8+/m0/s1
THP InChIKey InChI 1.03 CSNCBOPUCJOHLS-XLPZGREQSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
THP "SYSTEMATIC NAME" ACDLabs 10.04 "thymidine 3',5'-bis(dihydrogen phosphate)"
THP "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,5R)-5-(5-methyl-2,4-dioxo-pyrimidin-1-yl)-3-phosphonooxy-oxolan-2-yl]methyl dihydrogen phosphate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
THP 'Create component' 1999-07-08 EBI
THP 'Modify descriptor' 2011-06-04 RCSB
#
_pdbe_chem_comp_drugbank_details.comp_id THP
_pdbe_chem_comp_drugbank_details.drugbank_id DB04205
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name "Thymidine-3',5'-Diphosphate"
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number ?
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
_pdbe_chem_comp_drugbank_classification.comp_id THP
_pdbe_chem_comp_drugbank_classification.drugbank_id DB04205
_pdbe_chem_comp_drugbank_classification.parent "Pyrimidine deoxyribonucleoside 3',5'-bisphosphates"
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Pyrimidine nucleotides'
_pdbe_chem_comp_drugbank_classification.superclass 'Nucleosides, nucleotides, and analogues'
_pdbe_chem_comp_drugbank_classification.description
"This compound belongs to the class of organic compounds known as pyrimidine deoxyribonucleoside 3',5'-bisphosphates. These are pyrimidine ribobucleotides with one phosphate group attached to each of two different hydroxyl groups of the ribose moiety, which lacks a hydroxyl group at position 2."
#
loop_
_pdbe_chem_comp_drugbank_targets.comp_id
_pdbe_chem_comp_drugbank_targets.drugbank_id
_pdbe_chem_comp_drugbank_targets.name
_pdbe_chem_comp_drugbank_targets.organism
_pdbe_chem_comp_drugbank_targets.uniprot_id
_pdbe_chem_comp_drugbank_targets.pharmacologically_active
_pdbe_chem_comp_drugbank_targets.ordinal
THP DB04205 'DNA topoisomerase 1' 'Escherichia coli (strain K12)' P06612 unknown 1
THP DB04205 Thermonuclease 'Staphylococcus aureus' P00644 unknown 2
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
THP P2 P 12.167 -4.683 1
THP O4P O 13.049 -5.896 2
THP O5P O 13.381 -3.801 3
THP O6P O 10.954 -5.564 4
THP P1 P 5.038 -3.469 5
THP O1P O 3.547 -3.312 6
THP O2P O 4.882 -4.961 7
THP O3P O 5.195 -1.977 8
THP "O5'" O 11.285 -3.469 9
THP "C5'" C 9.793 -3.626 10
THP "C4'" C 8.912 -2.412 11
THP "O4'" O 9.376 -0.986 12
THP "C3'" C 7.412 -2.412 13
THP "O3'" O 6.530 -3.626 14
THP "C2'" C 6.948 -0.986 15
THP "C1'" C 8.162 -0.104 16
THP N1 N 8.162 1.396 17
THP C2 C 9.461 2.146 18
THP O2 O 10.760 1.396 19
THP N3 N 9.461 3.646 20
THP C4 C 8.162 4.396 21
THP O4 O 8.162 5.896 22
THP C5 C 6.863 3.646 23
THP C5M C 5.564 4.396 24
THP C6 C 6.863 2.146 25
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
THP P2 O4P DOUBLE NONE 1
THP P2 O5P SINGLE NONE 2
THP P2 O6P SINGLE NONE 3
THP P2 "O5'" SINGLE NONE 4
THP P1 O1P DOUBLE NONE 5
THP P1 O2P SINGLE NONE 6
THP P1 O3P SINGLE NONE 7
THP P1 "O3'" SINGLE NONE 8
THP "O5'" "C5'" SINGLE NONE 9
THP "C4'" "C5'" SINGLE BEGINDASH 10
THP "C4'" "O4'" SINGLE NONE 11
THP "C4'" "C3'" SINGLE NONE 12
THP "O4'" "C1'" SINGLE NONE 13
THP "C3'" "O3'" SINGLE BEGINWEDGE 14
THP "C3'" "C2'" SINGLE NONE 15
THP "C2'" "C1'" SINGLE NONE 16
THP "C1'" N1 SINGLE BEGINDASH 17
THP N1 C2 SINGLE NONE 18
THP N1 C6 SINGLE NONE 19
THP C2 O2 DOUBLE NONE 20
THP C2 N3 SINGLE NONE 21
THP N3 C4 SINGLE NONE 22
THP C4 O4 DOUBLE NONE 23
THP C4 C5 SINGLE NONE 24
THP C5 C5M SINGLE NONE 25
THP C5 C6 DOUBLE NONE 26
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
THP MurckoScaffold S1 scaffold 'O=c1ccn([C@H]2CCCO2)c(=O)[nH]1' InChI=1S/C8H10N2O3/c11-6-3-4-10(8(12)9-6)7-2-1-5-13-7/h3-4,7H,1-2,5H2,(H,9,11,12)/t7-/m1/s1 CWWIKVUHBBTKHC-SSDOTTSWSA-N
THP deoxyribose F1 fragment 'OCC1OC[CH2]C1O' InChI=1S/C5H10O3/c6-3-5-4(7)1-2-8-5/h4-7H,1-3H2 NSMOSDAEGJTOIQ-UHFFFAOYSA-N
THP phosphate F2 fragment O=P(O)(O)O InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4) NBIIXXVUZAFLBC-UHFFFAOYSA-N
THP pyrimidine F3 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
THP "C4'" S1 1
THP "O4'" S1 1
THP "C3'" S1 1
THP "C2'" S1 1
THP "C1'" S1 1
THP N1 S1 1
THP C2 S1 1
THP O2 S1 1
THP N3 S1 1
THP C4 S1 1
THP O4 S1 1
THP C5 S1 1
THP C6 S1 1
THP "C1'" F1 1
THP "C2'" F1 1
THP "C3'" F1 1
THP "O3'" F1 1
THP "C4'" F1 1
THP "O4'" F1 1
THP "C5'" F1 1
THP "O5'" F1 1
THP O5P F2 1
THP P2 F2 1
THP O4P F2 1
THP O6P F2 1
THP "O5'" F2 1
THP O2P F2 2
THP P1 F2 2
THP O1P F2 2
THP O3P F2 2
THP "O3'" F2 2
THP C5 F3 1
THP C4 F3 1
THP N3 F3 1
THP C2 F3 1
THP N1 F3 1
THP C6 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id THP
_pdbe_chem_comp_rdkit_properties.exactmw 402.023
_pdbe_chem_comp_rdkit_properties.amw 402.189
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 13
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 5
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 11
_pdbe_chem_comp_rdkit_properties.NumHBD 5
_pdbe_chem_comp_rdkit_properties.NumHBA 12
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 25
_pdbe_chem_comp_rdkit_properties.NumAtoms 41
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 15
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.600
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 3
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 162.089
_pdbe_chem_comp_rdkit_properties.tpsa 197.610
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.465
_pdbe_chem_comp_rdkit_properties.CrippenMR 79.450
_pdbe_chem_comp_rdkit_properties.chi0v 13.068
_pdbe_chem_comp_rdkit_properties.chi1v 8.475
_pdbe_chem_comp_rdkit_properties.chi2v 2.829
_pdbe_chem_comp_rdkit_properties.chi3v 2.829
_pdbe_chem_comp_rdkit_properties.chi4v 1.849
_pdbe_chem_comp_rdkit_properties.chi0n 27.280
_pdbe_chem_comp_rdkit_properties.chi1n 13.134
_pdbe_chem_comp_rdkit_properties.chi2n 2.108
_pdbe_chem_comp_rdkit_properties.chi3n 2.108
_pdbe_chem_comp_rdkit_properties.chi4n 1.302
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.140
_pdbe_chem_comp_rdkit_properties.kappa1 7.468
_pdbe_chem_comp_rdkit_properties.kappa2 7.234
_pdbe_chem_comp_rdkit_properties.kappa3 5.677
_pdbe_chem_comp_rdkit_properties.Phi 2.161
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
THP UniChem ChEMBL CHEMBL1235491
THP UniChem DrugBank DB04205
THP UniChem PDBe THP
THP UniChem ZINC ZINC000011422512
THP UniChem BRENDA 197733
THP UniChem BRENDA 21297
THP UniChem 'Probes And Drugs' PD059343
THP UniChem Nikkaji J1.833.651K
THP UniChem SureChEMBL SCHEMBL288740
THP UniChem 'PubChem TPHARMA' 15801140
THP UniChem PubChem 121976
THP UniChem ACTor 2863-04-9
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
THP P2 -2.216 3.377 0.580 ETKDGv3 1
THP O4P -2.518 4.590 -0.269 ETKDGv3 2
THP O5P -3.442 3.187 1.733 ETKDGv3 3
THP O6P -0.732 3.604 1.363 ETKDGv3 4
THP P1 -2.453 -3.888 0.844 ETKDGv3 5
THP O1P -3.644 -3.363 1.615 ETKDGv3 6
THP O2P -2.889 -5.320 0.056 ETKDGv3 7
THP O3P -1.187 -4.212 1.921 ETKDGv3 8
THP "O5'" -2.133 2.003 -0.426 ETKDGv3 9
THP "C5'" -1.938 0.871 0.388 ETKDGv3 10
THP "C4'" -1.702 -0.356 -0.503 ETKDGv3 11
THP "O4'" -0.621 -0.097 -1.377 ETKDGv3 12
THP "C3'" -1.397 -1.610 0.324 ETKDGv3 13
THP "O3'" -1.969 -2.735 -0.320 ETKDGv3 14
THP "C2'" 0.104 -1.686 0.248 ETKDGv3 15
THP "C1'" 0.409 -1.014 -1.079 ETKDGv3 16
THP N1 1.717 -0.339 -1.035 ETKDGv3 17
THP C2 2.918 -1.062 -1.372 ETKDGv3 18
THP O2 2.865 -2.265 -1.744 ETKDGv3 19
THP N3 4.183 -0.407 -1.281 ETKDGv3 20
THP C4 4.245 0.941 -0.818 ETKDGv3 21
THP O4 5.358 1.530 -0.760 ETKDGv3 22
THP C5 3.006 1.634 -0.408 ETKDGv3 23
THP C5M 3.061 3.057 0.078 ETKDGv3 24
THP C6 1.822 1.012 -0.535 ETKDGv3 25
THP HOP5 -4.261 3.011 1.205 ETKDGv3 26
THP HOP6 -0.885 4.364 1.979 ETKDGv3 27
THP HOP2 -3.564 -5.043 -0.614 ETKDGv3 28
THP HOP3 -0.541 -4.748 1.397 ETKDGv3 29
THP "H5'1" -1.053 0.998 1.054 ETKDGv3 30
THP "H5'2" -2.843 0.686 1.010 ETKDGv3 31
THP "H4'" -2.620 -0.518 -1.111 ETKDGv3 32
THP "H3'" -1.734 -1.476 1.381 ETKDGv3 33
THP "H2'1" 0.483 -2.730 0.271 ETKDGv3 34
THP "H2'2" 0.549 -1.112 1.091 ETKDGv3 35
THP "H1'" 0.406 -1.783 -1.883 ETKDGv3 36
THP H3 5.057 -0.913 -1.548 ETKDGv3 37
THP H51 3.977 3.224 0.683 ETKDGv3 38
THP H52 3.073 3.744 -0.794 ETKDGv3 39
THP H53 2.186 3.300 0.718 ETKDGv3 40
THP H6 0.922 1.544 -0.254 ETKDGv3 41
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