data_TKP
#
_chem_comp.id TKP
_chem_comp.name
"2-(3-chlorophenyl)-2-methylpropyl [(2S)-3-cyclohexyl-1-({(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}amino)-1-oxopropan-2-yl]carbamate"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C27 H40 Cl N3 O5"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2020-03-24
_chem_comp.pdbx_modified_date 2020-09-25
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 522.077
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code ?
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6W5H
_chem_comp.pdbx_subcomponent_list "VZ7 ALC ELL"
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
TKP C29 C13 C 0 1 N N N N N N 26.190 24.515 -34.804 -4.062 2.409 -0.978 C29 VZ7 1
TKP C01 C14 C 0 1 N N N N N N 24.219 25.955 -35.339 -4.515 0.223 -2.100 C01 VZ7 2
TKP C02 C15 C 0 1 N N N N N N 24.679 24.534 -34.990 -4.311 0.916 -0.752 C02 VZ7 3
TKP C03 C16 C 0 1 N N N N N N 24.036 24.086 -33.677 -3.105 0.300 -0.039 C03 VZ7 4
TKP C05 C17 C 0 1 N N N N N N 24.087 22.027 -32.481 -0.763 -0.016 -0.370 C05 VZ7 5
TKP C30 C22 C 0 1 Y N N N N N 24.293 23.625 -36.152 -5.543 0.735 0.098 C30 VZ7 6
TKP C31 C23 C 0 1 Y N N N N N 22.963 23.302 -36.335 -6.762 1.215 -0.343 C31 VZ7 7
TKP C32 C24 C 0 1 Y N N N N N 22.583 22.483 -37.381 -7.893 1.049 0.437 C32 VZ7 8
TKP C34 C25 C 0 1 Y N N N N N 23.525 21.991 -38.259 -7.802 0.403 1.658 C34 VZ7 9
TKP C35 C26 C 0 1 Y N N N N N 24.862 22.313 -38.079 -6.582 -0.075 2.097 C35 VZ7 10
TKP C36 C27 C 0 1 Y N N N N N 25.241 23.128 -37.026 -5.454 0.086 1.314 C36 VZ7 11
TKP O04 O1 O 0 1 N N N N N N 24.755 22.946 -33.277 -1.919 0.474 -0.857 O04 VZ7 12
TKP O28 O5 O 0 1 N N N N N N 22.893 22.049 -32.377 -0.747 -0.574 0.709 O28 VZ7 13
TKP CL3 CL1 CL 0 0 N N N N N N 20.850 22.096 -37.559 -9.425 1.651 -0.115 CL3 VZ7 14
TKP N06 N1 N 0 1 N N N N N N 24.899 21.050 -31.806 0.375 0.112 -1.080 N ALC 15
TKP C07 C18 C 0 1 N N S N N N 24.247 19.982 -31.100 1.633 -0.421 -0.550 CA ALC 16
TKP C15 C4 C 0 1 N N N N N N 23.600 20.491 -29.820 2.791 0.333 -1.150 C ALC 17
TKP O27 O4 O 0 1 N N N N N N 24.127 21.371 -29.219 2.586 1.228 -1.943 O ALC 18
TKP C08 C19 C 0 1 N N N N N N 25.288 18.952 -30.682 1.749 -1.904 -0.908 CB ALC 19
TKP C09 C20 C 0 1 N N N N N N 25.874 18.132 -31.840 0.645 -2.689 -0.197 CG ALC 20
TKP C10 C1 C 0 1 N N N N N N 24.803 17.196 -32.369 0.864 -2.619 1.316 CD2 ALC 21
TKP C11 C5 C 0 1 N N N N N N 25.358 16.238 -33.405 -0.240 -3.404 2.027 CE2 ALC 22
TKP C12 C2 C 0 1 N N N N N N 26.539 15.471 -32.845 -0.202 -4.865 1.573 CZ ALC 23
TKP C13 C3 C 0 1 N N N N N N 27.639 16.354 -32.278 -0.420 -4.934 0.060 CE1 ALC 24
TKP C14 C6 C 0 1 N N N N N N 27.086 17.381 -31.296 0.684 -4.149 -0.651 CD1 ALC 25
TKP O24 O2 O 0 1 N N N N N N 18.214 22.353 -29.733 7.725 0.262 2.123 OAD ELL 26
TKP C20 C9 C 0 1 N N N N N N 19.216 22.881 -29.399 7.149 1.297 1.864 CD2 ELL 27
TKP N21 N3 N 0 1 N N N N N N 19.335 24.336 -29.050 7.418 2.489 2.425 NAH ELL 28
TKP C22 C10 C 0 1 N N N N N N 20.712 24.612 -28.720 6.536 3.537 1.898 CAE ELL 29
TKP C23 C11 C 0 1 N N N N N N 21.383 23.238 -28.477 5.938 2.957 0.597 CD1 ELL 30
TKP C19 C21 C 0 1 N N S N N N 20.533 22.252 -29.250 6.030 1.437 0.856 CG ELL 31
TKP C18 C8 C 0 1 N N N N N N 20.375 20.952 -28.450 6.375 0.692 -0.435 CB ELL 32
TKP C17 C7 C 0 1 N N S N N N 21.706 20.258 -28.134 5.180 0.747 -1.390 CA ELL 33
TKP N16 N2 N 0 1 N N N N N N 22.367 19.852 -29.362 4.055 0.014 -0.806 N ELL 34
TKP C25 C12 C 0 1 N N N N N N 21.435 18.994 -27.291 5.567 0.110 -2.726 C ELL 35
TKP O26 O3 O 0 1 N N N N N N 22.656 18.445 -26.850 6.055 -1.214 -2.499 O ELL 36
TKP H20 H20 H 0 1 N N N N N N 26.465 25.171 -33.965 -4.921 2.848 -1.485 H20 VZ7 37
TKP H21 H21 H 0 1 N N N N N N 26.520 23.488 -34.589 -3.916 2.902 -0.017 H21 VZ7 38
TKP H22 H22 H 0 1 N N N N N N 26.677 24.872 -35.724 -3.171 2.539 -1.592 H22 VZ7 39
TKP H23 H23 H 0 1 N N N N N N 24.483 26.638 -34.518 -3.625 0.354 -2.714 H23 VZ7 40
TKP H24 H24 H 0 1 N N N N N N 24.715 26.284 -36.264 -4.693 -0.840 -1.939 H24 VZ7 41
TKP H25 H25 H 0 1 N N N N N N 23.129 25.962 -35.485 -5.374 0.662 -2.608 H25 VZ7 42
TKP H26 H26 H 0 1 N N N N N N 24.118 24.878 -32.918 -2.960 0.794 0.922 H26 VZ7 43
TKP H27 H27 H 0 1 N N N N N N 22.976 23.837 -33.833 -3.283 -0.763 0.122 H27 VZ7 44
TKP H33 H33 H 0 1 N N N N N N 22.217 23.691 -35.658 -6.832 1.719 -1.295 H33 VZ7 45
TKP H34 H34 H 0 1 N N N N N N 23.224 21.359 -39.081 -8.684 0.278 2.269 H34 VZ7 46
TKP H35 H35 H 0 1 N N N N N N 25.607 21.928 -38.760 -6.512 -0.579 3.049 H35 VZ7 47
TKP H36 H36 H 0 1 N N N N N N 26.283 23.377 -36.887 -4.501 -0.289 1.658 H36 VZ7 48
TKP H37 H37 H 0 1 N N N N N N 25.897 21.113 -31.828 0.363 0.557 -1.941 H2 ALC 49
TKP H28 H28 H 0 1 N N N N N N 23.486 19.502 -31.733 1.648 -0.307 0.534 HA ALC 50
TKP H29 H29 H 0 1 N N N N N N 24.817 18.256 -29.972 1.646 -2.026 -1.986 HB2 ALC 51
TKP H30 H30 H 0 1 N N N N N N 26.114 19.481 -30.183 2.723 -2.279 -0.592 HB3 ALC 52
TKP H31 H31 H 0 1 N N N N N N 26.196 18.813 -32.642 -0.324 -2.257 -0.444 HG ALC 53
TKP H2 H2 H 0 1 N N N N N N 24.391 16.615 -31.531 1.834 -3.052 1.563 HD23 ALC 54
TKP H1 H1 H 0 1 N N N N N N 24.002 17.794 -32.829 0.836 -1.579 1.640 HD22 ALC 55
TKP H8 H8 H 0 1 N N N N N N 24.571 15.527 -33.698 -0.085 -3.355 3.105 HE23 ALC 56
TKP H7 H7 H 0 1 N N N N N N 25.683 16.809 -34.287 -1.210 -2.972 1.780 HE22 ALC 57
TKP H4 H4 H 0 1 N N N N N N 26.968 14.860 -33.652 0.768 -5.297 1.820 HZ3 ALC 58
TKP H3 H3 H 0 1 N N N N N N 26.175 14.814 -32.042 -0.988 -5.424 2.079 HZ2 ALC 59
TKP H6 H6 H 0 1 N N N N N N 28.134 16.883 -33.106 -0.393 -5.974 -0.264 HE13 ALC 60
TKP H5 H5 H 0 1 N N N N N N 28.372 15.721 -31.757 -1.390 -4.502 -0.187 HE12 ALC 61
TKP H9 H9 H 0 1 N N N N N N 26.791 16.860 -30.373 0.528 -4.199 -1.729 HD12 ALC 62
TKP H10 H10 H 0 1 N N N N N N 27.877 18.110 -31.068 1.654 -4.581 -0.404 HD13 ALC 63
TKP H39 H39 H 0 1 N N N N N N 18.588 25.000 -29.047 8.105 2.637 3.093 H1 ELL 64
TKP H14 H14 H 0 1 N N N N N N 21.206 25.135 -29.552 5.742 3.757 2.613 H2 ELL 65
TKP H15 H15 H 0 1 N N N N N N 20.770 25.230 -27.812 7.109 4.438 1.681 H3 ELL 66
TKP H16 H16 H 0 1 N N N N N N 21.385 22.991 -27.405 4.902 3.272 0.470 H4 ELL 67
TKP H17 H17 H 0 1 N N N N N N 22.416 23.239 -28.855 6.538 3.240 -0.267 H5 ELL 68
TKP H32 H32 H 0 1 N N N N N N 20.985 22.041 -30.230 5.093 1.066 1.273 H6 ELL 69
TKP H12 H12 H 0 1 N N N N N N 19.872 21.187 -27.501 7.238 1.162 -0.906 H7 ELL 70
TKP H13 H13 H 0 1 N N N N N N 19.751 20.259 -29.033 6.608 -0.347 -0.204 H8 ELL 71
TKP H11 H11 H 0 1 N N N N N N 22.347 20.944 -27.561 4.892 1.786 -1.552 H9 ELL 72
TKP H38 H38 H 0 1 N N N N N N 21.968 19.116 -29.909 4.218 -0.702 -0.172 H11 ELL 73
TKP H18 H18 H 0 1 N N N N N N 20.819 19.261 -26.420 4.692 0.068 -3.375 H13 ELL 74
TKP H19 H19 H 0 1 N N N N N N 20.902 18.253 -27.905 6.344 0.707 -3.202 H19 ELL 75
TKP H40 H40 H 0 1 N N N N N N 22.485 17.667 -26.332 6.319 -1.680 -3.305 H40 ELL 76
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
TKP C34 C35 DOUB Y N 1
TKP C34 C32 SING Y N 2
TKP C35 C36 SING Y N 3
TKP CL3 C32 SING N N 4
TKP C32 C31 DOUB Y N 5
TKP C36 C30 DOUB Y N 6
TKP C31 C30 SING Y N 7
TKP C30 C02 SING N N 8
TKP C01 C02 SING N N 9
TKP C02 C29 SING N N 10
TKP C02 C03 SING N N 11
TKP C03 O04 SING N N 12
TKP C11 C12 SING N N 13
TKP C11 C10 SING N N 14
TKP O04 C05 SING N N 15
TKP C12 C13 SING N N 16
TKP C05 O28 DOUB N N 17
TKP C05 N06 SING N N 18
TKP C10 C09 SING N N 19
TKP C13 C14 SING N N 20
TKP C09 C14 SING N N 21
TKP C09 C08 SING N N 22
TKP N06 C07 SING N N 23
TKP C07 C08 SING N N 24
TKP C07 C15 SING N N 25
TKP C15 N16 SING N N 26
TKP C15 O27 DOUB N N 27
TKP O24 C20 DOUB N N 28
TKP C20 C19 SING N N 29
TKP C20 N21 SING N N 30
TKP N16 C17 SING N N 31
TKP C19 C23 SING N N 32
TKP C19 C18 SING N N 33
TKP N21 C22 SING N N 34
TKP C22 C23 SING N N 35
TKP C18 C17 SING N N 36
TKP C17 C25 SING N N 37
TKP C25 O26 SING N N 38
TKP C10 H1 SING N N 39
TKP C10 H2 SING N N 40
TKP C12 H3 SING N N 41
TKP C12 H4 SING N N 42
TKP C13 H5 SING N N 43
TKP C13 H6 SING N N 44
TKP C11 H7 SING N N 45
TKP C11 H8 SING N N 46
TKP C14 H9 SING N N 47
TKP C14 H10 SING N N 48
TKP C17 H11 SING N N 49
TKP C18 H12 SING N N 50
TKP C18 H13 SING N N 51
TKP C22 H14 SING N N 52
TKP C22 H15 SING N N 53
TKP C23 H16 SING N N 54
TKP C23 H17 SING N N 55
TKP C25 H18 SING N N 56
TKP C25 H19 SING N N 57
TKP C29 H20 SING N N 58
TKP C29 H21 SING N N 59
TKP C29 H22 SING N N 60
TKP C01 H23 SING N N 61
TKP C01 H24 SING N N 62
TKP C01 H25 SING N N 63
TKP C03 H26 SING N N 64
TKP C03 H27 SING N N 65
TKP C07 H28 SING N N 66
TKP C08 H29 SING N N 67
TKP C08 H30 SING N N 68
TKP C09 H31 SING N N 69
TKP C19 H32 SING N N 70
TKP C31 H33 SING N N 71
TKP C34 H34 SING N N 72
TKP C35 H35 SING N N 73
TKP C36 H36 SING N N 74
TKP N06 H37 SING N N 75
TKP N16 H38 SING N N 76
TKP N21 H39 SING N N 77
TKP O26 H40 SING N N 78
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
TKP SMILES ACDLabs 12.01 CC(C)(COC(=O)NC(CC1CCCCC1)C(NC(CC2C(=O)NCC2)CO)=O)c3cc(ccc3)Cl
TKP InChI InChI 1.03 InChI=1S/C27H40ClN3O5/c1-27(2,20-9-6-10-21(28)15-20)17-36-26(35)31-23(13-18-7-4-3-5-8-18)25(34)30-22(16-32)14-19-11-12-29-24(19)33/h6,9-10,15,18-19,22-23,32H,3-5,7-8,11-14,16-17H2,1-2H3,(H,29,33)(H,30,34)(H,31,35)/t19-,22-,23-/m0/s1
TKP InChIKey InChI 1.03 PQWRUFWLUCFVIF-VJBMBRPKSA-N
TKP SMILES_CANONICAL CACTVS 3.385 CC(C)(COC(=O)N[C@@H](CC1CCCCC1)C(=O)N[C@H](CO)C[C@@H]2CCNC2=O)c3cccc(Cl)c3
TKP SMILES CACTVS 3.385 CC(C)(COC(=O)N[CH](CC1CCCCC1)C(=O)N[CH](CO)C[CH]2CCNC2=O)c3cccc(Cl)c3
TKP SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 CC(C)(COC(=O)N[C@@H](CC1CCCCC1)C(=O)N[C@@H](C[C@@H]2CCNC2=O)CO)c3cccc(c3)Cl
TKP SMILES "OpenEye OEToolkits" 2.0.7 CC(C)(COC(=O)NC(CC1CCCCC1)C(=O)NC(CC2CCNC2=O)CO)c3cccc(c3)Cl
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
TKP "SYSTEMATIC NAME" ACDLabs 12.01 "2-(3-chlorophenyl)-2-methylpropyl [(2S)-3-cyclohexyl-1-({(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}amino)-1-oxopropan-2-yl]carbamate"
TKP "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[2-(3-chlorophenyl)-2-methyl-propyl] ~{N}-[(2~{S})-3-cyclohexyl-1-oxidanylidene-1-[[(2~{S})-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]propan-2-yl]carbamate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
TKP 'Create component' 2020-03-24 RCSB
TKP 'Modify subcomponent list' 2020-09-23 RCSB
TKP 'Initial release' 2020-09-30 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
TKP C29 C 4.098 -3.375 1
TKP C01 C 7.098 -3.375 2
TKP C02 C 5.598 -3.375 3
TKP C03 C 5.598 -1.875 4
TKP C05 C 6.897 0.375 5
TKP C30 C 5.598 -4.875 6
TKP C31 C 4.299 -5.625 7
TKP C32 C 4.299 -7.125 8
TKP C34 C 5.598 -7.875 9
TKP C35 C 6.897 -7.125 10
TKP C36 C 6.897 -5.625 11
TKP O04 O 6.897 -1.125 12
TKP O28 O 5.598 1.125 13
TKP CL3 Cl 3.000 -7.875 14
TKP N06 N 8.196 1.125 15
TKP C07 C 8.196 2.625 16
TKP C15 C 9.495 3.375 17
TKP O27 O 9.495 4.875 18
TKP C08 C 6.897 3.375 19
TKP C09 C 6.897 4.875 20
TKP C10 C 8.196 5.625 21
TKP C11 C 8.196 7.125 22
TKP C12 C 6.897 7.875 23
TKP C13 C 5.598 7.125 24
TKP C14 C 5.598 5.625 25
TKP O24 O 16.373 1.298 26
TKP C20 C 16.062 2.765 27
TKP N21 N 17.065 3.880 28
TKP C22 C 16.315 5.179 29
TKP C23 C 14.848 4.867 30
TKP C19 C 14.691 3.375 31
TKP C18 C 13.392 2.625 32
TKP C17 C 12.093 3.375 33
TKP N16 N 10.794 2.625 34
TKP C25 C 12.093 4.875 35
TKP O26 O 13.392 5.625 36
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
TKP C34 C35 DOUBLE NONE 1
TKP C34 C32 SINGLE NONE 2
TKP C35 C36 SINGLE NONE 3
TKP CL3 C32 SINGLE NONE 4
TKP C32 C31 DOUBLE NONE 5
TKP C36 C30 DOUBLE NONE 6
TKP C31 C30 SINGLE NONE 7
TKP C30 C02 SINGLE NONE 8
TKP C01 C02 SINGLE NONE 9
TKP C02 C29 SINGLE NONE 10
TKP C02 C03 SINGLE NONE 11
TKP C03 O04 SINGLE NONE 12
TKP C11 C12 SINGLE NONE 13
TKP C11 C10 SINGLE NONE 14
TKP O04 C05 SINGLE NONE 15
TKP C12 C13 SINGLE NONE 16
TKP C05 O28 DOUBLE NONE 17
TKP C05 N06 SINGLE NONE 18
TKP C10 C09 SINGLE NONE 19
TKP C13 C14 SINGLE NONE 20
TKP C09 C14 SINGLE NONE 21
TKP C09 C08 SINGLE NONE 22
TKP N06 C07 SINGLE NONE 23
TKP C07 C08 SINGLE BEGINWEDGE 24
TKP C07 C15 SINGLE NONE 25
TKP C15 N16 SINGLE NONE 26
TKP C15 O27 DOUBLE NONE 27
TKP O24 C20 DOUBLE NONE 28
TKP C20 C19 SINGLE NONE 29
TKP C20 N21 SINGLE NONE 30
TKP N16 C17 SINGLE NONE 31
TKP C19 C23 SINGLE NONE 32
TKP C19 C18 SINGLE BEGINDASH 33
TKP N21 C22 SINGLE NONE 34
TKP C22 C23 SINGLE NONE 35
TKP C17 C18 SINGLE BEGINDASH 36
TKP C17 C25 SINGLE NONE 37
TKP C25 O26 SINGLE NONE 38
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
TKP MurckoScaffold S1 scaffold 'O=C(N[C@@H](CC1CCCCC1)C(=O)NCC[C@@H]1CCNC1=O)OCCc1ccccc1' InChI=1S/C24H35N3O4/c28-22-20(11-14-25-22)12-15-26-23(29)21(17-19-9-5-2-6-10-19)27-24(30)31-16-13-18-7-3-1-4-8-18/h1,3-4,7-8,19-21H,2,5-6,9-17H2,(H,25,28)(H,26,29)(H,27,30)/t20-,21-/m0/s1 KCVNLZGUUGHTAI-SFTDATJTSA-N
TKP amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
TKP cyclohexane F2 fragment C1CCCCC1 InChI=1S/C6H12/c1-2-4-6-5-3-1/h1-6H2 XDTMQSROBMDMFD-UHFFFAOYSA-N
TKP peptide F3 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
TKP phenyl F4 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
TKP Z2856434901 F5 fragment CNCCC1CCCCC1 InChI=1S/C9H19N/c1-10-8-7-9-5-3-2-4-6-9/h9-10H,2-8H2,1H3 KCYFTGSOYOWCJF-UHFFFAOYSA-N
TKP Z32016974 F6 fragment CNC(=O)CCC1CCCCC1 InChI=1S/C10H19NO/c1-11-10(12)8-7-9-5-3-2-4-6-9/h9H,2-8H2,1H3,(H,11,12) NKQAGLASNCWFIR-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
TKP C02 S1 1
TKP C03 S1 1
TKP C05 S1 1
TKP C30 S1 1
TKP C31 S1 1
TKP C32 S1 1
TKP C34 S1 1
TKP C35 S1 1
TKP C36 S1 1
TKP O04 S1 1
TKP O28 S1 1
TKP N06 S1 1
TKP C07 S1 1
TKP C15 S1 1
TKP O27 S1 1
TKP C08 S1 1
TKP C09 S1 1
TKP C10 S1 1
TKP C11 S1 1
TKP C12 S1 1
TKP C13 S1 1
TKP C14 S1 1
TKP O24 S1 1
TKP C20 S1 1
TKP N21 S1 1
TKP C22 S1 1
TKP C23 S1 1
TKP C19 S1 1
TKP C18 S1 1
TKP C17 S1 1
TKP N16 S1 1
TKP N21 F1 1
TKP C20 F1 1
TKP O24 F1 1
TKP C19 F1 1
TKP N16 F1 2
TKP C15 F1 2
TKP O27 F1 2
TKP C07 F1 2
TKP C09 F2 1
TKP C10 F2 1
TKP C11 F2 1
TKP C12 F2 1
TKP C13 F2 1
TKP C14 F2 1
TKP O27 F3 1
TKP C15 F3 1
TKP C07 F3 1
TKP N06 F3 1
TKP C30 F4 1
TKP C36 F4 1
TKP C35 F4 1
TKP C34 F4 1
TKP C32 F4 1
TKP C31 F4 1
TKP C05 F5 1
TKP N06 F5 1
TKP C07 F5 1
TKP C08 F5 1
TKP C09 F5 1
TKP C10 F5 1
TKP C11 F5 1
TKP C12 F5 1
TKP C13 F5 1
TKP C14 F5 1
TKP C17 F6 1
TKP N16 F6 1
TKP C15 F6 1
TKP O27 F6 1
TKP C07 F6 1
TKP C08 F6 1
TKP C09 F6 1
TKP C10 F6 1
TKP C11 F6 1
TKP C12 F6 1
TKP C13 F6 1
TKP C14 F6 1
#
_pdbe_chem_comp_rdkit_properties.comp_id TKP
_pdbe_chem_comp_rdkit_properties.exactmw 521.266
_pdbe_chem_comp_rdkit_properties.amw 522.086
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 8
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 4
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 14
_pdbe_chem_comp_rdkit_properties.NumHBD 4
_pdbe_chem_comp_rdkit_properties.NumHBA 5
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 36
_pdbe_chem_comp_rdkit_properties.NumAtoms 76
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 9
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 3
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.667
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 2
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 3
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 274.888
_pdbe_chem_comp_rdkit_properties.tpsa 116.760
_pdbe_chem_comp_rdkit_properties.CrippenClogP 3.631
_pdbe_chem_comp_rdkit_properties.CrippenMR 138.426
_pdbe_chem_comp_rdkit_properties.chi0v 18.017
_pdbe_chem_comp_rdkit_properties.chi1v 9.383
_pdbe_chem_comp_rdkit_properties.chi2v 3.705
_pdbe_chem_comp_rdkit_properties.chi3v 3.705
_pdbe_chem_comp_rdkit_properties.chi4v 2.173
_pdbe_chem_comp_rdkit_properties.chi0n 57.261
_pdbe_chem_comp_rdkit_properties.chi1n 28.755
_pdbe_chem_comp_rdkit_properties.chi2n 3.516
_pdbe_chem_comp_rdkit_properties.chi3n 3.516
_pdbe_chem_comp_rdkit_properties.chi4n 2.032
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.320
_pdbe_chem_comp_rdkit_properties.kappa1 6.280
_pdbe_chem_comp_rdkit_properties.kappa2 13.289
_pdbe_chem_comp_rdkit_properties.kappa3 8.372
_pdbe_chem_comp_rdkit_properties.Phi 2.318
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
TKP UniChem PDBe TKP
TKP UniChem PubChem 154700577
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
TKP C29 -5.244 0.510 -1.533 ETKDGv3 1
TKP C01 -5.072 -1.964 -1.830 ETKDGv3 2
TKP C02 -5.117 -0.834 -0.773 ETKDGv3 3
TKP C03 -3.796 -0.817 0.038 ETKDGv3 4
TKP C05 -1.381 -0.408 -0.335 ETKDGv3 5
TKP C30 -6.297 -1.073 0.192 ETKDGv3 6
TKP C31 -7.357 -0.042 0.434 ETKDGv3 7
TKP C32 -8.361 -0.275 1.290 ETKDGv3 8
TKP C34 -8.435 -1.557 2.015 ETKDGv3 9
TKP C35 -7.496 -2.485 1.821 ETKDGv3 10
TKP C36 -6.386 -2.235 0.881 ETKDGv3 11
TKP O04 -2.679 -0.585 -0.818 ETKDGv3 12
TKP O28 -1.144 -0.495 0.901 ETKDGv3 13
TKP CL3 -9.595 0.943 1.560 ETKDGv3 14
TKP N06 -0.329 -0.107 -1.265 ETKDGv3 15
TKP C07 1.023 0.334 -0.897 ETKDGv3 16
TKP C15 1.808 -0.780 -0.244 ETKDGv3 17
TKP O27 1.222 -1.809 0.191 ETKDGv3 18
TKP C08 1.012 1.599 0.002 ETKDGv3 19
TKP C09 0.438 2.899 -0.624 ETKDGv3 20
TKP C10 -1.098 2.896 -0.765 ETKDGv3 21
TKP C11 -1.596 4.270 -1.235 ETKDGv3 22
TKP C12 -0.930 4.672 -2.559 ETKDGv3 23
TKP C13 0.601 4.648 -2.443 ETKDGv3 24
TKP C14 1.098 3.276 -1.966 ETKDGv3 25
TKP O24 7.552 -3.238 -1.300 ETKDGv3 26
TKP C20 7.604 -2.883 -0.092 ETKDGv3 27
TKP N21 8.823 -2.695 0.588 ETKDGv3 28
TKP C22 8.572 -2.347 1.970 ETKDGv3 29
TKP C23 7.040 -2.340 2.141 ETKDGv3 30
TKP C19 6.410 -2.667 0.763 ETKDGv3 31
TKP C18 5.523 -1.526 0.206 ETKDGv3 32
TKP C17 4.040 -1.624 0.642 ETKDGv3 33
TKP N16 3.234 -0.663 -0.120 ETKDGv3 34
TKP C25 3.836 -1.386 2.150 ETKDGv3 35
TKP O26 4.318 -0.126 2.536 ETKDGv3 36
TKP H20 -5.201 1.370 -0.829 ETKDGv3 37
TKP H21 -6.195 0.550 -2.106 ETKDGv3 38
TKP H22 -4.414 0.640 -2.261 ETKDGv3 39
TKP H23 -6.051 -2.045 -2.349 ETKDGv3 40
TKP H24 -4.291 -1.763 -2.594 ETKDGv3 41
TKP H25 -4.836 -2.946 -1.370 ETKDGv3 42
TKP H26 -3.846 -0.011 0.804 ETKDGv3 43
TKP H27 -3.645 -1.783 0.565 ETKDGv3 44
TKP H33 -7.339 0.912 -0.073 ETKDGv3 45
TKP H34 -9.247 -1.744 2.705 ETKDGv3 46
TKP H35 -7.546 -3.426 2.355 ETKDGv3 47
TKP H36 -5.643 -3.012 0.768 ETKDGv3 48
TKP H37 -0.566 -0.143 -2.282 ETKDGv3 49
TKP H28 1.571 0.575 -1.832 ETKDGv3 50
TKP H29 2.063 1.822 0.292 ETKDGv3 51
TKP H30 0.482 1.391 0.955 ETKDGv3 52
TKP H31 0.690 3.706 0.101 ETKDGv3 53
TKP H2 -1.569 2.654 0.212 ETKDGv3 54
TKP H1 -1.424 2.143 -1.511 ETKDGv3 55
TKP H8 -1.377 5.035 -0.458 ETKDGv3 56
TKP H7 -2.698 4.231 -1.376 ETKDGv3 57
TKP H4 -1.261 5.695 -2.839 ETKDGv3 58
TKP H3 -1.253 3.976 -3.364 ETKDGv3 59
TKP H6 1.046 4.874 -3.436 ETKDGv3 60
TKP H5 0.934 5.435 -1.732 ETKDGv3 61
TKP H9 0.852 2.523 -2.746 ETKDGv3 62
TKP H10 2.203 3.311 -1.847 ETKDGv3 63
TKP H39 9.770 -2.799 0.160 ETKDGv3 64
TKP H14 8.998 -1.343 2.184 ETKDGv3 65
TKP H15 9.041 -3.102 2.638 ETKDGv3 66
TKP H16 6.743 -3.114 2.882 ETKDGv3 67
TKP H17 6.718 -1.351 2.530 ETKDGv3 68
TKP H32 5.840 -3.621 0.814 ETKDGv3 69
TKP H12 5.530 -1.582 -0.906 ETKDGv3 70
TKP H13 5.945 -0.531 0.469 ETKDGv3 71
TKP H11 3.686 -2.650 0.398 ETKDGv3 72
TKP H38 3.705 0.152 -0.576 ETKDGv3 73
TKP H18 4.362 -2.170 2.732 ETKDGv3 74
TKP H19 2.758 -1.481 2.410 ETKDGv3 75
TKP H40 3.624 0.536 2.282 ETKDGv3 76
#